Wall clock time and date at job start Tue Mar 31 2020 22:49:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42898 * 113.99942 * 2 1 4 4 C 1.53002 * 109.46981 * 180.02562 * 3 2 1 5 5 C 1.52994 * 109.47296 * 180.02562 * 4 3 2 6 6 N 1.46497 * 109.47698 * 176.95519 * 5 4 3 7 7 C 1.36736 * 127.13903 * 88.58411 * 6 5 4 8 8 C 1.50703 * 126.34543 * 359.97438 * 7 6 5 9 9 H 1.08997 * 110.45785 * 2.60318 * 8 7 6 10 10 C 1.54508 * 110.51100 * 240.00026 * 8 7 6 11 11 C 1.54473 * 104.18603 * 241.28550 * 10 8 7 12 12 O 1.44641 * 104.69536 * 336.19109 * 11 10 8 13 13 C 1.44422 * 105.36924 * 40.34540 * 12 11 10 14 14 N 1.30296 * 107.30554 * 180.24795 * 7 6 5 15 15 N 1.28527 * 110.05515 * 359.55822 * 14 7 6 16 16 C 1.31218 * 109.85650 * 0.45245 * 15 14 7 17 17 N 1.38582 * 126.47124 * 179.68969 * 16 15 14 18 18 C 1.46890 * 111.00551 * 306.67597 * 17 16 15 19 19 C 1.46905 * 110.99745 * 70.63026 * 17 16 15 20 20 H 1.09006 * 109.47257 * 54.99424 * 19 17 16 21 21 C 1.53001 * 109.46772 * 295.00094 * 19 17 16 22 22 C 1.50695 * 109.47284 * 174.99894 * 19 17 16 23 23 H 1.07997 * 120.00030 * 359.97438 * 22 19 17 24 24 C 1.37879 * 119.99973 * 179.97438 * 22 19 17 25 25 N 1.31515 * 120.00235 * 0.02562 * 24 22 19 26 26 Si 1.86801 * 119.99752 * 180.02562 * 24 22 19 27 27 H 1.48500 * 109.47409 * 359.97438 * 26 24 22 28 28 H 1.48498 * 109.47086 * 120.00312 * 26 24 22 29 29 H 1.48509 * 109.46706 * 239.99749 * 26 24 22 30 30 H 1.09003 * 109.47098 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47230 * 299.99714 * 1 2 3 32 32 H 1.08999 * 109.47442 * 59.99627 * 1 2 3 33 33 H 1.08997 * 109.47169 * 60.00828 * 3 2 1 34 34 H 1.08999 * 109.47164 * 300.00268 * 3 2 1 35 35 H 1.08995 * 109.47200 * 59.99768 * 4 3 2 36 36 H 1.09009 * 109.47141 * 299.99927 * 4 3 2 37 37 H 1.09004 * 109.47427 * 56.95241 * 5 4 3 38 38 H 1.09007 * 109.46994 * 296.95511 * 5 4 3 39 39 H 1.09004 * 110.51163 * 0.02562 * 10 8 7 40 40 H 1.09001 * 110.51001 * 122.57120 * 10 8 7 41 41 H 1.09005 * 110.37176 * 94.92428 * 11 10 8 42 42 H 1.09004 * 110.37798 * 217.25739 * 11 10 8 43 43 H 1.09006 * 110.37320 * 200.73098 * 13 12 11 44 44 H 1.08998 * 110.37529 * 78.40054 * 13 12 11 45 45 H 1.09007 * 109.47148 * 54.60551 * 18 17 16 46 46 H 1.09003 * 109.47740 * 174.60527 * 18 17 16 47 47 H 1.08998 * 109.47365 * 294.60975 * 18 17 16 48 48 H 1.09003 * 109.47153 * 299.99489 * 21 19 17 49 49 H 1.08995 * 109.47746 * 60.00148 * 21 19 17 50 50 H 1.09006 * 109.47033 * 179.97438 * 21 19 17 51 51 H 0.96996 * 120.00355 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 6 4.1578 2.5823 0.0000 6 7 5.6164 2.4674 0.0727 7 6 6.4887 2.3530 -0.9740 8 6 6.1289 2.3201 -2.4370 9 1 5.0543 2.4477 -2.5680 10 6 6.5993 0.9967 -3.0807 11 6 7.6026 1.4403 -4.1683 12 8 7.2280 2.8023 -4.4794 13 6 6.9045 3.4098 -3.2098 14 7 7.6883 2.2717 -0.4718 15 7 7.6344 2.3358 0.8108 16 6 6.3865 2.4528 1.1992 17 7 5.9357 2.5435 2.5065 18 6 6.4475 1.4314 3.3183 19 6 6.2971 3.8380 3.0993 20 1 5.9219 4.6440 2.4686 21 6 7.8198 3.9420 3.2075 22 6 5.6871 3.9494 4.4728 23 1 5.0902 3.1397 4.8658 24 6 5.8911 5.0850 5.2277 25 7 6.6175 6.0713 4.7489 26 14 5.1355 5.2227 6.9305 27 1 4.3687 3.9876 7.2332 28 1 6.2129 5.3964 7.9376 29 1 4.2236 6.3941 6.9741 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.6887 1.8463 0.8900 34 1 1.6885 1.8464 -0.8900 35 1 3.8567 0.6438 -0.8908 36 1 3.8574 0.6435 0.8892 37 1 3.7940 3.1417 0.8619 38 1 3.8797 3.1042 -0.9157 39 1 7.0919 0.3659 -2.3406 40 1 5.7574 0.4699 -3.5298 41 1 8.6212 1.4064 -3.7814 42 1 7.5100 0.8076 -5.0510 43 1 6.2771 4.2888 -3.3586 44 1 7.8152 3.6790 -2.6748 45 1 7.5346 1.3979 3.2444 46 1 6.1584 1.5780 4.3590 47 1 6.0296 0.4930 2.9538 48 1 8.1951 3.1360 3.8383 49 1 8.2610 3.8615 2.2142 50 1 8.0881 4.9027 3.6471 51 1 6.7613 6.8700 5.2801 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001555496786.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:39 Heat of formation + Delta-G solvation = 2.266656 kcal Electronic energy + Delta-G solvation = -31129.349141 eV Core-core repulsion = 27066.089402 eV Total energy + Delta-G solvation = -4063.259739 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 3.37 seconds Orbital eigenvalues (eV) -42.66196 -39.33368 -38.23805 -37.23317 -35.65845 -33.27699 -32.67093 -31.79564 -29.85616 -28.92296 -27.97720 -27.39033 -25.58622 -25.22565 -25.12472 -23.48364 -22.41459 -22.22865 -21.35186 -19.87136 -19.44772 -17.28275 -16.65322 -16.39753 -16.36885 -16.35958 -15.92554 -15.68039 -15.35498 -15.17023 -14.92276 -14.61972 -14.45702 -13.95378 -13.64636 -13.19361 -13.04912 -12.74014 -12.52191 -12.39620 -12.16127 -12.13949 -11.71659 -11.55339 -11.51513 -11.39554 -11.29696 -11.24010 -11.13227 -10.97792 -10.94529 -10.80132 -10.58364 -10.22376 -10.16791 -9.98860 -9.91006 -9.89822 -9.76308 -8.94362 -8.53138 -8.47188 -7.74626 -6.11776 -4.18213 2.05702 2.52358 3.22656 3.23476 3.31870 3.35168 3.52178 3.77726 4.29180 4.36557 4.42765 4.52642 4.59197 4.64695 4.85593 4.88023 4.89783 4.96591 5.04232 5.11612 5.12398 5.14672 5.20441 5.23474 5.38492 5.42114 5.50612 5.58308 5.68183 5.70595 5.75608 5.77201 5.81584 5.92440 6.01318 6.17693 6.34971 6.41914 6.58012 6.61444 6.80628 6.88515 6.97506 7.02925 7.12331 7.47793 7.60186 7.71372 7.87311 8.21385 8.41473 8.85464 9.17907 9.46927 10.94943 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.008759 B = 0.003928 C = 0.002950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3195.996638 B = 7125.935034 C = 9490.355852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.391 6.391 3 C 0.066 3.934 4 C -0.130 4.130 5 C 0.116 3.884 6 N -0.466 5.466 7 C 0.160 3.840 8 C -0.027 4.027 9 H 0.096 0.904 10 C -0.141 4.141 11 C 0.048 3.952 12 O -0.375 6.375 13 C 0.058 3.942 14 N -0.285 5.285 15 N -0.312 5.312 16 C 0.382 3.618 17 N -0.470 5.470 18 C 0.046 3.954 19 C 0.224 3.776 20 H 0.035 0.965 21 C -0.173 4.173 22 C -0.508 4.508 23 H 0.067 0.933 24 C 0.063 3.937 25 N -0.888 5.888 26 Si 0.900 3.100 27 H -0.272 1.272 28 H -0.284 1.284 29 H -0.284 1.284 30 H 0.085 0.915 31 H 0.043 0.957 32 H 0.040 0.960 33 H 0.059 0.941 34 H 0.050 0.950 35 H 0.072 0.928 36 H 0.084 0.916 37 H 0.110 0.890 38 H 0.088 0.912 39 H 0.085 0.915 40 H 0.079 0.921 41 H 0.067 0.933 42 H 0.092 0.908 43 H 0.095 0.905 44 H 0.076 0.924 45 H 0.040 0.960 46 H 0.091 0.909 47 H 0.044 0.956 48 H 0.032 0.968 49 H 0.032 0.968 50 H 0.086 0.914 51 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.677 -9.328 -14.550 19.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.310 6.310 3 C -0.011 4.011 4 C -0.168 4.168 5 C -0.007 4.007 6 N -0.159 5.159 7 C -0.107 4.107 8 C -0.048 4.048 9 H 0.114 0.886 10 C -0.180 4.180 11 C -0.029 4.029 12 O -0.294 6.294 13 C -0.020 4.020 14 N -0.126 5.126 15 N -0.155 5.155 16 C 0.027 3.973 17 N -0.196 5.196 18 C -0.102 4.102 19 C 0.120 3.880 20 H 0.053 0.947 21 C -0.232 4.232 22 C -0.546 4.546 23 H 0.085 0.915 24 C -0.140 4.140 25 N -0.526 5.526 26 Si 0.727 3.273 27 H -0.196 1.196 28 H -0.210 1.210 29 H -0.210 1.210 30 H 0.103 0.897 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.077 0.923 34 H 0.069 0.931 35 H 0.091 0.909 36 H 0.103 0.897 37 H 0.128 0.872 38 H 0.106 0.894 39 H 0.104 0.896 40 H 0.098 0.902 41 H 0.085 0.915 42 H 0.110 0.890 43 H 0.113 0.887 44 H 0.095 0.905 45 H 0.059 0.941 46 H 0.109 0.891 47 H 0.062 0.938 48 H 0.051 0.949 49 H 0.051 0.949 50 H 0.105 0.895 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.529 -9.349 -14.605 18.905 hybrid contribution -1.315 0.543 1.270 1.907 sum -8.845 -8.806 -13.335 18.264 Atomic orbital electron populations 1.22743 0.80852 1.02756 1.00103 1.87868 1.19828 1.27853 1.95466 1.22372 0.93035 0.84912 1.00765 1.21783 0.93725 0.96798 1.04506 1.21633 0.76239 0.97857 1.05016 1.46266 1.08161 1.55104 1.06413 1.24128 0.87146 1.08065 0.91338 1.20802 1.01314 0.97295 0.85405 0.88621 1.22965 0.99994 0.96423 0.98595 1.23454 0.98127 0.83375 0.97914 1.89133 1.87930 1.24659 1.27643 1.23466 0.99492 0.95025 0.83985 1.73901 1.18333 1.17601 1.02748 1.74784 1.15966 1.21135 1.03644 1.22934 0.85416 0.99860 0.89112 1.59430 1.57807 1.07694 0.94714 1.22242 0.98602 0.90594 0.98752 1.19409 0.92449 0.81644 0.94516 0.94678 1.22432 0.98308 1.03228 0.99209 1.21035 1.31708 1.02736 0.99169 0.91524 1.24910 0.95132 0.95545 0.98372 1.69915 1.38603 1.06592 1.37515 0.86417 0.78949 0.78074 0.83825 1.19642 1.20970 1.21036 0.89654 0.93817 0.94108 0.92311 0.93128 0.90888 0.89734 0.87184 0.89368 0.89597 0.90203 0.91507 0.89020 0.88718 0.90542 0.94096 0.89061 0.93762 0.94924 0.94864 0.89545 0.92815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.37 16 2 O -0.39 -4.41 10.70 -35.23 -0.38 -4.79 16 3 C 0.07 0.66 5.94 37.16 0.22 0.88 16 4 C -0.13 -1.47 5.91 -26.73 -0.16 -1.63 16 5 C 0.12 1.44 5.89 -4.05 -0.02 1.42 16 6 N -0.47 -7.59 2.81 -114.08 -0.32 -7.91 16 7 C 0.16 2.51 6.41 -154.02 -0.99 1.53 16 8 C -0.03 -0.31 3.52 -90.21 -0.32 -0.63 16 9 H 0.10 0.90 7.04 -51.93 -0.37 0.54 16 10 C -0.14 -1.43 6.72 -25.17 -0.17 -1.60 16 11 C 0.05 0.48 7.65 37.93 0.29 0.77 16 12 O -0.38 -4.57 11.65 -35.23 -0.41 -4.98 16 13 C 0.06 0.69 7.18 37.93 0.27 0.96 16 14 N -0.29 -5.46 11.91 32.99 0.39 -5.07 16 15 N -0.31 -6.69 9.72 30.32 0.29 -6.40 16 16 C 0.38 7.68 6.21 -318.87 -1.98 5.70 16 17 N -0.47 -9.91 4.77 -176.08 -0.84 -10.76 16 18 C 0.05 0.90 8.66 60.06 0.52 1.42 16 19 C 0.22 5.53 2.32 -68.86 -0.16 5.37 16 20 H 0.04 0.97 8.11 -51.93 -0.42 0.54 16 21 C -0.17 -4.34 8.20 37.16 0.30 -4.03 16 22 C -0.51 -13.15 7.81 -34.44 -0.27 -13.42 16 23 H 0.07 1.70 6.81 -52.49 -0.36 1.34 16 24 C 0.06 1.66 5.30 -17.82 -0.09 1.56 16 25 N -0.89 -24.65 11.32 55.43 0.63 -24.02 16 26 Si 0.90 20.46 29.54 -169.99 -5.02 15.44 16 27 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 28 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 29 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 30 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.04 0.27 8.14 -51.93 -0.42 -0.16 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.08 1.16 8.14 -51.92 -0.42 0.73 16 37 H 0.11 1.51 8.14 -51.93 -0.42 1.08 16 38 H 0.09 0.83 7.29 -51.92 -0.38 0.46 16 39 H 0.09 0.99 7.73 -51.93 -0.40 0.59 16 40 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 44 H 0.08 1.05 7.65 -51.93 -0.40 0.66 16 45 H 0.04 0.84 6.54 -51.93 -0.34 0.50 16 46 H 0.09 1.82 6.29 -51.93 -0.33 1.50 16 47 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 48 H 0.03 0.79 6.60 -51.93 -0.34 0.45 16 49 H 0.03 0.82 5.95 -51.93 -0.31 0.52 16 50 H 0.09 2.37 6.07 -51.93 -0.32 2.06 16 51 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 402.70 15.07 6.07 6.07 Total: -1.00 -31.31 402.70 -9.61 -40.92 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -8.59 Total: 1.85 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: -1.44 Total: -0.35 kcal Atomic # 7 Polarization: -54.31 SS G_CDS: 0.15 Total: -54.16 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: -0.79 Total: -9.77 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -31.31 -9.61 -40.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001555496786.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.182 kcal (2) G-P(sol) polarization free energy of solvation -31.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.37 seconds