Wall clock time and date at job start Tue Mar 31 2020 22:49:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42898 * 113.99942 * 2 1 4 4 C 1.53002 * 109.46981 * 180.02562 * 3 2 1 5 5 C 1.52994 * 109.47296 * 180.02562 * 4 3 2 6 6 N 1.46497 * 109.47698 * 176.95519 * 5 4 3 7 7 C 1.36736 * 127.13903 * 88.58411 * 6 5 4 8 8 C 1.50703 * 126.34543 * 359.97438 * 7 6 5 9 9 H 1.08997 * 110.45785 * 2.60318 * 8 7 6 10 10 C 1.54508 * 110.51100 * 240.00026 * 8 7 6 11 11 C 1.54473 * 104.18603 * 241.28550 * 10 8 7 12 12 O 1.44641 * 104.69536 * 336.19109 * 11 10 8 13 13 C 1.44422 * 105.36924 * 40.34540 * 12 11 10 14 14 N 1.30296 * 107.30554 * 180.24795 * 7 6 5 15 15 N 1.28527 * 110.05515 * 359.55822 * 14 7 6 16 16 C 1.31218 * 109.85650 * 0.45245 * 15 14 7 17 17 N 1.38582 * 126.47124 * 179.68969 * 16 15 14 18 18 C 1.46890 * 111.00551 * 306.67597 * 17 16 15 19 19 C 1.46905 * 110.99745 * 70.63026 * 17 16 15 20 20 H 1.09006 * 109.47257 * 54.99424 * 19 17 16 21 21 C 1.53001 * 109.46772 * 295.00094 * 19 17 16 22 22 C 1.50695 * 109.47284 * 174.99894 * 19 17 16 23 23 H 1.07997 * 120.00030 * 359.97438 * 22 19 17 24 24 C 1.37879 * 119.99973 * 179.97438 * 22 19 17 25 25 N 1.31515 * 120.00235 * 0.02562 * 24 22 19 26 26 Si 1.86801 * 119.99752 * 180.02562 * 24 22 19 27 27 H 1.48500 * 109.47409 * 359.97438 * 26 24 22 28 28 H 1.48498 * 109.47086 * 120.00312 * 26 24 22 29 29 H 1.48509 * 109.46706 * 239.99749 * 26 24 22 30 30 H 1.09003 * 109.47098 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47230 * 299.99714 * 1 2 3 32 32 H 1.08999 * 109.47442 * 59.99627 * 1 2 3 33 33 H 1.08997 * 109.47169 * 60.00828 * 3 2 1 34 34 H 1.08999 * 109.47164 * 300.00268 * 3 2 1 35 35 H 1.08995 * 109.47200 * 59.99768 * 4 3 2 36 36 H 1.09009 * 109.47141 * 299.99927 * 4 3 2 37 37 H 1.09004 * 109.47427 * 56.95241 * 5 4 3 38 38 H 1.09007 * 109.46994 * 296.95511 * 5 4 3 39 39 H 1.09004 * 110.51163 * 0.02562 * 10 8 7 40 40 H 1.09001 * 110.51001 * 122.57120 * 10 8 7 41 41 H 1.09005 * 110.37176 * 94.92428 * 11 10 8 42 42 H 1.09004 * 110.37798 * 217.25739 * 11 10 8 43 43 H 1.09006 * 110.37320 * 200.73098 * 13 12 11 44 44 H 1.08998 * 110.37529 * 78.40054 * 13 12 11 45 45 H 1.09007 * 109.47148 * 54.60551 * 18 17 16 46 46 H 1.09003 * 109.47740 * 174.60527 * 18 17 16 47 47 H 1.08998 * 109.47365 * 294.60975 * 18 17 16 48 48 H 1.09003 * 109.47153 * 299.99489 * 21 19 17 49 49 H 1.08995 * 109.47746 * 60.00148 * 21 19 17 50 50 H 1.09006 * 109.47033 * 179.97438 * 21 19 17 51 51 H 0.96996 * 120.00355 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 6 4.1578 2.5823 0.0000 6 7 5.6164 2.4674 0.0727 7 6 6.4887 2.3530 -0.9740 8 6 6.1289 2.3201 -2.4370 9 1 5.0543 2.4477 -2.5680 10 6 6.5993 0.9967 -3.0807 11 6 7.6026 1.4403 -4.1683 12 8 7.2280 2.8023 -4.4794 13 6 6.9045 3.4098 -3.2098 14 7 7.6883 2.2717 -0.4718 15 7 7.6344 2.3358 0.8108 16 6 6.3865 2.4528 1.1992 17 7 5.9357 2.5435 2.5065 18 6 6.4475 1.4314 3.3183 19 6 6.2971 3.8380 3.0993 20 1 5.9219 4.6440 2.4686 21 6 7.8198 3.9420 3.2075 22 6 5.6871 3.9494 4.4728 23 1 5.0902 3.1397 4.8658 24 6 5.8911 5.0850 5.2277 25 7 6.6175 6.0713 4.7489 26 14 5.1355 5.2227 6.9305 27 1 4.3687 3.9876 7.2332 28 1 6.2129 5.3964 7.9376 29 1 4.2236 6.3941 6.9741 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.6887 1.8463 0.8900 34 1 1.6885 1.8464 -0.8900 35 1 3.8567 0.6438 -0.8908 36 1 3.8574 0.6435 0.8892 37 1 3.7940 3.1417 0.8619 38 1 3.8797 3.1042 -0.9157 39 1 7.0919 0.3659 -2.3406 40 1 5.7574 0.4699 -3.5298 41 1 8.6212 1.4064 -3.7814 42 1 7.5100 0.8076 -5.0510 43 1 6.2771 4.2888 -3.3586 44 1 7.8152 3.6790 -2.6748 45 1 7.5346 1.3979 3.2444 46 1 6.1584 1.5780 4.3590 47 1 6.0296 0.4930 2.9538 48 1 8.1951 3.1360 3.8383 49 1 8.2610 3.8615 2.2142 50 1 8.0881 4.9027 3.6471 51 1 6.7613 6.8700 5.2801 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001555496786.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:34 Heat of formation + Delta-G solvation = -16.658570 kcal Electronic energy + Delta-G solvation = -31130.169801 eV Core-core repulsion = 27066.089402 eV Total energy + Delta-G solvation = -4064.080399 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 9.86 seconds Orbital eigenvalues (eV) -44.06278 -40.27037 -39.00607 -38.95846 -36.80084 -34.94517 -33.98458 -32.87852 -31.13643 -30.50597 -29.33375 -28.18537 -27.27482 -27.00043 -26.21453 -24.52009 -23.45461 -23.33298 -22.79151 -21.13642 -20.90766 -18.43697 -18.34446 -17.56954 -17.46355 -17.22594 -17.09968 -16.82136 -16.76843 -16.42911 -16.02152 -15.77258 -15.55286 -15.27786 -14.89278 -14.78735 -14.29992 -13.97445 -13.82074 -13.44318 -13.26911 -13.15606 -13.13789 -12.98414 -12.81733 -12.73295 -12.66101 -12.58371 -12.35750 -12.31055 -12.15695 -12.08323 -12.04354 -12.01621 -11.83975 -11.46663 -11.13383 -10.91565 -10.80185 -10.61652 -10.54599 -9.98496 -9.46380 -8.15020 -6.28380 0.69827 1.25294 1.43617 1.46175 1.57548 1.77378 2.41227 2.72732 2.83281 3.08981 3.16096 3.36205 3.51104 3.61533 3.70826 3.97011 3.98398 4.06171 4.11005 4.18506 4.21864 4.31080 4.36888 4.39729 4.48380 4.55868 4.58149 4.60962 4.65964 4.70995 4.72960 4.82108 4.86000 4.88025 4.88478 4.97921 4.99007 5.03292 5.06116 5.08227 5.11179 5.14717 5.39483 5.61059 5.62139 5.73383 5.82485 5.98728 6.19371 6.22290 6.61688 6.81514 7.40884 7.73594 8.91992 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.008759 B = 0.003928 C = 0.002950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3195.996638 B = 7125.935034 C = 9490.355852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.418 6.418 3 C 0.069 3.931 4 C -0.118 4.118 5 C 0.111 3.889 6 N -0.462 5.462 7 C 0.186 3.814 8 C -0.027 4.027 9 H 0.130 0.870 10 C -0.135 4.135 11 C 0.045 3.955 12 O -0.384 6.384 13 C 0.059 3.941 14 N -0.321 5.321 15 N -0.345 5.345 16 C 0.358 3.642 17 N -0.464 5.464 18 C 0.052 3.948 19 C 0.236 3.764 20 H 0.001 0.999 21 C -0.154 4.154 22 C -0.516 4.516 23 H 0.071 0.929 24 C 0.015 3.985 25 N -0.920 5.920 26 Si 0.966 3.034 27 H -0.261 1.261 28 H -0.284 1.284 29 H -0.281 1.281 30 H 0.095 0.905 31 H 0.045 0.955 32 H 0.057 0.943 33 H 0.054 0.946 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.054 0.946 37 H 0.094 0.906 38 H 0.128 0.872 39 H 0.068 0.932 40 H 0.110 0.890 41 H 0.054 0.946 42 H 0.120 0.880 43 H 0.114 0.886 44 H 0.049 0.951 45 H 0.027 0.973 46 H 0.086 0.914 47 H 0.066 0.934 48 H 0.031 0.969 49 H 0.028 0.972 50 H 0.060 0.940 51 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.213 -10.281 -16.095 22.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.337 6.337 3 C -0.008 4.008 4 C -0.156 4.156 5 C -0.011 4.011 6 N -0.154 5.154 7 C -0.082 4.082 8 C -0.048 4.048 9 H 0.148 0.852 10 C -0.174 4.174 11 C -0.031 4.031 12 O -0.303 6.303 13 C -0.019 4.019 14 N -0.161 5.161 15 N -0.189 5.189 16 C 0.001 3.999 17 N -0.189 5.189 18 C -0.096 4.096 19 C 0.130 3.870 20 H 0.019 0.981 21 C -0.214 4.214 22 C -0.554 4.554 23 H 0.089 0.911 24 C -0.184 4.184 25 N -0.560 5.560 26 Si 0.791 3.209 27 H -0.185 1.185 28 H -0.210 1.210 29 H -0.207 1.207 30 H 0.113 0.887 31 H 0.064 0.936 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.097 0.903 35 H 0.101 0.899 36 H 0.073 0.927 37 H 0.113 0.887 38 H 0.146 0.854 39 H 0.087 0.913 40 H 0.129 0.871 41 H 0.072 0.928 42 H 0.138 0.862 43 H 0.133 0.867 44 H 0.067 0.933 45 H 0.045 0.955 46 H 0.105 0.895 47 H 0.085 0.915 48 H 0.050 0.950 49 H 0.047 0.953 50 H 0.079 0.921 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.087 -10.327 -16.166 21.673 hybrid contribution -0.516 0.801 1.614 1.874 sum -10.603 -9.526 -14.552 20.370 Atomic orbital electron populations 1.22926 0.79234 1.03796 1.01027 1.87822 1.21668 1.28561 1.95679 1.22367 0.91691 0.84813 1.01956 1.21643 0.94962 0.95523 1.03501 1.21948 0.73854 0.98955 1.06362 1.46457 1.09631 1.54051 1.05253 1.24933 0.86026 1.04382 0.92840 1.21128 1.03294 0.98172 0.82207 0.85162 1.22966 1.00883 0.95464 0.98039 1.23599 0.97500 0.82922 0.99125 1.89134 1.87946 1.25643 1.27531 1.23426 0.98714 0.95884 0.83864 1.73828 1.20404 1.19901 1.01937 1.74647 1.17228 1.21897 1.05084 1.22824 0.85962 1.01796 0.89355 1.59288 1.57724 1.06419 0.95491 1.22205 0.97794 0.91125 0.98445 1.19053 0.91484 0.82633 0.93809 0.98096 1.22224 0.99065 1.01559 0.98518 1.21275 1.31603 1.02881 0.99657 0.91112 1.25721 0.95464 0.95168 1.02049 1.70053 1.39807 1.07124 1.38971 0.85383 0.78058 0.78347 0.79102 1.18499 1.21007 1.20708 0.88694 0.93599 0.92440 0.92722 0.90307 0.89911 0.92684 0.88730 0.85369 0.91341 0.87123 0.92795 0.86237 0.86749 0.93300 0.95461 0.89533 0.91493 0.95007 0.95348 0.92079 0.92833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 113.37 1.25 1.60 16 2 O -0.42 -8.49 10.70 -148.98 -1.59 -10.09 16 3 C 0.07 1.18 5.94 71.98 0.43 1.61 16 4 C -0.12 -2.43 5.91 30.59 0.18 -2.25 16 5 C 0.11 2.53 5.89 86.38 0.51 3.04 16 6 N -0.46 -14.72 2.81 -514.85 -1.45 -16.16 16 7 C 0.19 5.67 6.41 137.64 0.88 6.55 16 8 C -0.03 -0.55 3.52 -10.53 -0.04 -0.59 16 9 H 0.13 1.80 7.04 -2.39 -0.02 1.79 16 10 C -0.13 -2.36 6.72 31.61 0.21 -2.15 16 11 C 0.04 0.80 7.65 72.48 0.55 1.36 16 12 O -0.38 -8.49 11.65 -148.98 -1.74 -10.23 16 13 C 0.06 1.30 7.18 72.48 0.52 1.82 16 14 N -0.32 -12.50 11.91 -49.54 -0.59 -13.09 16 15 N -0.35 -15.28 9.72 -58.00 -0.56 -15.85 16 16 C 0.36 14.64 6.21 260.11 1.61 16.26 16 17 N -0.46 -20.00 4.77 -711.00 -3.39 -23.40 16 18 C 0.05 2.06 8.66 127.69 1.11 3.17 16 19 C 0.24 12.03 2.32 44.17 0.10 12.13 16 20 H 0.00 0.07 8.11 -2.38 -0.02 0.05 16 21 C -0.15 -8.10 8.20 71.98 0.59 -7.51 16 22 C -0.52 -27.09 7.81 25.60 0.20 -26.89 16 23 H 0.07 3.60 6.81 -2.91 -0.02 3.58 16 24 C 0.02 0.81 5.30 84.65 0.45 1.26 16 25 N -0.92 -52.30 11.32 21.45 0.24 -52.06 16 26 Si 0.97 42.02 29.54 68.60 2.03 44.05 16 27 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 28 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 29 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 30 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16 37 H 0.09 2.52 8.14 -2.38 -0.02 2.50 16 38 H 0.13 1.91 7.29 -2.38 -0.02 1.89 16 39 H 0.07 1.48 7.73 -2.38 -0.02 1.46 16 40 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.05 1.10 8.14 -2.38 -0.02 1.08 16 42 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.11 2.04 8.14 -2.38 -0.02 2.02 16 44 H 0.05 1.35 7.65 -2.39 -0.02 1.33 16 45 H 0.03 1.14 6.54 -2.38 -0.02 1.13 16 46 H 0.09 3.49 6.29 -2.39 -0.02 3.48 16 47 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 48 H 0.03 1.61 6.60 -2.39 -0.02 1.59 16 49 H 0.03 1.48 5.95 -2.39 -0.01 1.46 16 50 H 0.06 3.50 6.07 -2.38 -0.01 3.49 16 51 H 0.26 14.18 8.31 -92.71 -0.77 13.41 16 Total: -1.00 -70.61 402.70 2.42 -68.20 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: 0.91 Total: 19.23 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: 8.56 Total: 9.40 kcal Atomic # 7 Polarization: -114.81 SS G_CDS: -5.75 Total: -120.56 kcal Atomic # 8 Polarization: -16.99 SS G_CDS: -3.33 Total: -20.32 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.05 kcal Total: -70.61 2.42 -68.20 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001555496786.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.540 kcal (2) G-P(sol) polarization free energy of solvation -70.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 9.86 seconds