Wall clock time and date at job start Tue Mar 31 2020 22:50:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42899 * 113.99776 * 2 1 4 4 C 1.53008 * 109.47144 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.47102 * 179.97438 * 4 3 2 6 6 N 1.46507 * 109.46952 * 179.97438 * 5 4 3 7 7 C 1.36735 * 127.13125 * 85.85394 * 6 5 4 8 8 C 1.50703 * 126.35054 * 359.97438 * 7 6 5 9 9 H 1.08998 * 110.56347 * 2.67946 * 8 7 6 10 10 C 1.54509 * 110.50970 * 240.00161 * 8 7 6 11 11 C 1.54478 * 104.18569 * 241.28595 * 10 8 7 12 12 O 1.44648 * 104.69516 * 336.19151 * 11 10 8 13 13 C 1.44420 * 105.37101 * 40.34683 * 12 11 10 14 14 N 1.30296 * 107.30355 * 180.24303 * 7 6 5 15 15 N 1.28529 * 110.05101 * 359.55834 * 14 7 6 16 16 C 1.31221 * 109.86174 * 0.45169 * 15 14 7 17 17 N 1.38571 * 126.47539 * 179.69371 * 16 15 14 18 18 C 1.46902 * 111.00101 * 57.17333 * 17 16 15 19 19 C 1.46899 * 111.00358 * 293.22111 * 17 16 15 20 20 H 1.09002 * 109.46766 * 310.00321 * 19 17 16 21 21 C 1.53003 * 109.47148 * 69.99482 * 19 17 16 22 22 C 1.50700 * 109.47349 * 189.99953 * 19 17 16 23 23 H 1.07994 * 120.00048 * 359.97438 * 22 19 17 24 24 C 1.37882 * 119.99579 * 179.97438 * 22 19 17 25 25 N 1.31516 * 119.99526 * 179.97438 * 24 22 19 26 26 Si 1.86794 * 120.00532 * 0.02562 * 24 22 19 27 27 H 1.48496 * 109.47472 * 89.99487 * 26 24 22 28 28 H 1.48494 * 109.47068 * 210.00094 * 26 24 22 29 29 H 1.48513 * 109.46763 * 329.99766 * 26 24 22 30 30 H 1.08994 * 109.47183 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47058 * 300.00382 * 1 2 3 32 32 H 1.09008 * 109.46838 * 60.00007 * 1 2 3 33 33 H 1.08996 * 109.47771 * 59.99876 * 3 2 1 34 34 H 1.09003 * 109.47362 * 299.99157 * 3 2 1 35 35 H 1.09006 * 109.46507 * 59.99974 * 4 3 2 36 36 H 1.08991 * 109.46758 * 300.00195 * 4 3 2 37 37 H 1.09004 * 109.46912 * 60.00025 * 5 4 3 38 38 H 1.09000 * 109.47899 * 300.00119 * 5 4 3 39 39 H 1.08999 * 110.51521 * 0.02562 * 10 8 7 40 40 H 1.09000 * 110.51280 * 122.57522 * 10 8 7 41 41 H 1.08999 * 110.37576 * 94.91982 * 11 10 8 42 42 H 1.09000 * 110.37724 * 217.26100 * 11 10 8 43 43 H 1.08998 * 110.37677 * 200.73989 * 13 12 11 44 44 H 1.08995 * 110.37539 * 78.39443 * 13 12 11 45 45 H 1.09002 * 109.47138 * 67.75138 * 18 17 16 46 46 H 1.08996 * 109.47724 * 187.75818 * 18 17 16 47 47 H 1.09003 * 109.47250 * 307.75894 * 18 17 16 48 48 H 1.09002 * 109.46993 * 179.97438 * 21 19 17 49 49 H 1.08995 * 109.47579 * 300.00671 * 21 19 17 50 50 H 1.09002 * 109.46603 * 60.00738 * 21 19 17 51 51 H 0.96993 * 119.99819 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 6 4.1577 2.5824 0.0000 6 7 5.6182 2.4668 0.0012 7 6 6.4357 2.3222 -1.0853 8 6 6.0014 2.2502 -2.5266 9 1 4.9219 2.3773 -2.6080 10 6 6.4376 0.9087 -3.1570 11 6 7.3842 1.3205 -4.3062 12 8 6.9949 2.6743 -4.6349 13 6 6.7371 3.3170 -3.3676 14 7 7.6593 2.2524 -0.6431 15 7 7.6712 2.3516 0.6383 16 6 6.4448 2.4815 1.0868 17 7 6.0616 2.6088 2.4123 18 6 6.7188 3.7619 3.0420 19 6 6.3346 1.3742 3.1602 20 1 5.9276 0.5221 2.6157 21 6 7.8459 1.2004 3.3233 22 6 5.6888 1.4570 4.5193 23 1 5.1317 2.3386 4.7997 24 6 5.8093 0.4069 5.4048 25 7 5.2461 0.4793 6.5911 26 14 6.7735 -1.1177 4.9202 27 1 8.1960 -0.9492 5.3118 28 1 6.2065 -2.3028 5.6124 29 1 6.6846 -1.3133 3.4507 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8901 33 1 1.6886 1.8465 0.8899 34 1 1.6887 1.8464 -0.8901 35 1 3.8574 0.6436 -0.8892 36 1 3.8567 0.6440 0.8908 37 1 3.8357 3.1239 0.8896 38 1 3.8365 3.1229 -0.8904 39 1 6.9670 0.2974 -2.4262 40 1 5.5735 0.3715 -3.5480 41 1 8.4212 1.2953 -3.9712 42 1 7.2461 0.6642 -5.1654 43 1 6.1034 4.1926 -3.5080 44 1 7.6741 3.5987 -2.8874 45 1 6.3385 4.6829 2.6000 46 1 6.5106 3.7593 4.1119 47 1 7.7951 3.6992 2.8812 48 1 8.0485 0.2846 3.8786 49 1 8.3131 1.1406 2.3403 50 1 8.2529 2.0525 3.8678 51 1 5.3312 -0.2591 7.2141 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001555496788.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:00 Heat of formation + Delta-G solvation = -11.191412 kcal Electronic energy + Delta-G solvation = -31398.228954 eV Core-core repulsion = 27334.385629 eV Total energy + Delta-G solvation = -4063.843325 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 2.37 seconds Orbital eigenvalues (eV) -44.11865 -40.28334 -39.15224 -39.02273 -36.83212 -34.93579 -34.02512 -32.96215 -31.85900 -30.68646 -29.35279 -28.20325 -27.34769 -26.97608 -26.22585 -24.54058 -23.42123 -23.37630 -22.91923 -21.15303 -20.89997 -18.87924 -18.38950 -17.70944 -17.38527 -17.35668 -17.17279 -16.89000 -16.67296 -16.65349 -16.02603 -15.80855 -15.56713 -15.38778 -15.20197 -14.84969 -14.32003 -14.14210 -13.99148 -13.79292 -13.53842 -13.33449 -13.22456 -13.08840 -13.02123 -12.85711 -12.72157 -12.52726 -12.40737 -12.34746 -12.15569 -12.11547 -12.04943 -11.85710 -11.59158 -11.53264 -11.22703 -11.05831 -10.83263 -10.79714 -10.62550 -10.02443 -9.60555 -8.35096 -6.37317 0.62516 1.21693 1.23486 1.29336 1.36447 1.71084 2.23987 2.69481 2.79030 2.97243 3.02429 3.32667 3.50077 3.61207 3.71760 3.93900 3.96496 4.02207 4.07372 4.11352 4.19537 4.29299 4.32838 4.34175 4.37496 4.44401 4.49931 4.54195 4.56006 4.56689 4.64899 4.73199 4.77554 4.81068 4.85527 4.86652 4.88223 4.91512 4.97162 5.02714 5.06396 5.07174 5.11588 5.24723 5.48551 5.61325 5.75223 5.82670 6.15855 6.23268 6.54382 6.67283 7.26388 7.67298 8.80354 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.008838 B = 0.004372 C = 0.003381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3167.494264 B = 6403.431669 C = 8279.948130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.423 6.423 3 C 0.070 3.930 4 C -0.128 4.128 5 C 0.113 3.887 6 N -0.459 5.459 7 C 0.190 3.810 8 C -0.028 4.028 9 H 0.132 0.868 10 C -0.140 4.140 11 C 0.047 3.953 12 O -0.384 6.384 13 C 0.062 3.938 14 N -0.317 5.317 15 N -0.342 5.342 16 C 0.353 3.647 17 N -0.457 5.457 18 C 0.047 3.953 19 C 0.208 3.792 20 H 0.017 0.983 21 C -0.179 4.179 22 C -0.499 4.499 23 H 0.060 0.940 24 C 0.033 3.967 25 N -0.933 5.933 26 Si 0.932 3.068 27 H -0.268 1.268 28 H -0.292 1.292 29 H -0.269 1.269 30 H 0.091 0.909 31 H 0.044 0.956 32 H 0.062 0.938 33 H 0.054 0.946 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.041 0.959 37 H 0.104 0.896 38 H 0.138 0.862 39 H 0.063 0.937 40 H 0.106 0.894 41 H 0.055 0.945 42 H 0.117 0.883 43 H 0.120 0.880 44 H 0.053 0.947 45 H 0.076 0.924 46 H 0.080 0.920 47 H 0.036 0.964 48 H 0.034 0.966 49 H 0.058 0.942 50 H 0.061 0.939 51 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.997 4.352 -22.197 23.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.343 6.343 3 C -0.007 4.007 4 C -0.166 4.166 5 C -0.009 4.009 6 N -0.151 5.151 7 C -0.078 4.078 8 C -0.049 4.049 9 H 0.150 0.850 10 C -0.179 4.179 11 C -0.029 4.029 12 O -0.303 6.303 13 C -0.016 4.016 14 N -0.157 5.157 15 N -0.185 5.185 16 C -0.004 4.004 17 N -0.182 5.182 18 C -0.100 4.100 19 C 0.101 3.899 20 H 0.034 0.966 21 C -0.237 4.237 22 C -0.538 4.538 23 H 0.078 0.922 24 C -0.166 4.166 25 N -0.573 5.573 26 Si 0.761 3.239 27 H -0.194 1.194 28 H -0.219 1.219 29 H -0.194 1.194 30 H 0.110 0.890 31 H 0.063 0.937 32 H 0.081 0.919 33 H 0.073 0.927 34 H 0.105 0.895 35 H 0.098 0.902 36 H 0.060 0.940 37 H 0.122 0.878 38 H 0.156 0.844 39 H 0.082 0.918 40 H 0.125 0.875 41 H 0.073 0.927 42 H 0.135 0.865 43 H 0.138 0.862 44 H 0.072 0.928 45 H 0.095 0.905 46 H 0.098 0.902 47 H 0.054 0.946 48 H 0.053 0.947 49 H 0.077 0.923 50 H 0.080 0.920 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.967 4.175 -22.201 23.365 hybrid contribution -0.099 -0.974 1.196 1.546 sum -6.066 3.200 -21.005 22.096 Atomic orbital electron populations 1.22925 0.79151 1.03727 1.01140 1.87845 1.21822 1.28942 1.95690 1.22387 0.91377 0.84765 1.02157 1.21732 0.95540 0.96496 1.02864 1.21986 0.73509 0.98172 1.07198 1.46479 1.09652 1.53578 1.05409 1.24936 0.86869 1.03950 0.92011 1.21149 1.03090 0.97992 0.82679 0.85038 1.22986 1.01350 0.95692 0.97856 1.23556 0.97641 0.83448 0.98272 1.89138 1.88654 1.25121 1.27341 1.23453 0.99513 0.95458 0.83186 1.73849 1.18924 1.19761 1.03198 1.74601 1.18804 1.21272 1.03862 1.22732 0.85719 1.02409 0.89590 1.59001 1.57397 1.06791 0.95049 1.22293 0.96703 0.90490 1.00487 1.19460 0.91673 0.86183 0.92605 0.96556 1.22746 0.99255 1.00754 1.00990 1.20908 1.32383 1.03672 0.96818 0.92225 1.25423 0.96143 1.00426 0.94657 1.69953 1.45972 1.33572 1.07809 0.86118 0.79260 0.80022 0.78493 1.19443 1.21936 1.19437 0.89038 0.93686 0.91900 0.92726 0.89484 0.90173 0.94042 0.87778 0.84377 0.91820 0.87531 0.92651 0.86535 0.86200 0.92825 0.90535 0.90169 0.94553 0.94734 0.92282 0.91982 0.92233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 113.37 1.25 1.68 16 2 O -0.42 -10.16 10.70 -148.98 -1.59 -11.75 16 3 C 0.07 1.33 5.94 71.98 0.43 1.76 16 4 C -0.13 -2.96 5.91 30.60 0.18 -2.78 16 5 C 0.11 2.34 5.84 86.38 0.50 2.85 16 6 N -0.46 -13.35 2.81 -514.85 -1.45 -14.80 16 7 C 0.19 5.24 6.41 137.64 0.88 6.12 16 8 C -0.03 -0.51 3.53 -10.52 -0.04 -0.54 16 9 H 0.13 1.52 7.11 -2.39 -0.02 1.51 16 10 C -0.14 -2.43 6.72 31.61 0.21 -2.22 16 11 C 0.05 0.80 7.65 72.48 0.55 1.35 16 12 O -0.38 -7.58 11.65 -148.98 -1.74 -9.32 16 13 C 0.06 1.11 7.18 72.49 0.52 1.63 16 14 N -0.32 -11.28 11.91 -49.54 -0.59 -11.87 16 15 N -0.34 -13.78 9.81 -58.01 -0.57 -14.35 16 16 C 0.35 13.29 6.26 260.12 1.63 14.92 16 17 N -0.46 -18.66 4.72 -711.00 -3.36 -22.02 16 18 C 0.05 1.77 8.49 127.69 1.08 2.85 16 19 C 0.21 9.95 1.87 44.17 0.08 10.03 16 20 H 0.02 0.85 7.11 -2.39 -0.02 0.84 16 21 C -0.18 -8.27 7.89 71.98 0.57 -7.70 16 22 C -0.50 -27.34 8.38 25.60 0.21 -27.12 16 23 H 0.06 3.52 7.44 -2.91 -0.02 3.50 16 24 C 0.03 1.86 5.45 84.66 0.46 2.32 16 25 N -0.93 -56.21 13.96 21.45 0.30 -55.91 16 26 Si 0.93 45.87 24.37 68.60 1.67 47.54 16 27 H -0.27 -12.75 6.87 99.48 0.68 -12.07 16 28 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 29 H -0.27 -13.10 6.53 99.48 0.65 -12.45 16 30 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 33 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.08 1.71 8.14 -2.38 -0.02 1.70 16 36 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.10 2.36 8.13 -2.38 -0.02 2.34 16 38 H 0.14 1.53 7.41 -2.39 -0.02 1.51 16 39 H 0.06 1.43 7.73 -2.39 -0.02 1.41 16 40 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 43 H 0.12 1.55 8.14 -2.39 -0.02 1.53 16 44 H 0.05 1.22 7.65 -2.39 -0.02 1.20 16 45 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 46 H 0.08 3.24 6.62 -2.39 -0.02 3.22 16 47 H 0.04 1.37 6.67 -2.39 -0.02 1.36 16 48 H 0.03 1.64 3.27 -2.39 -0.01 1.63 16 49 H 0.06 2.69 6.01 -2.39 -0.01 2.67 16 50 H 0.06 2.77 6.59 -2.39 -0.02 2.76 16 51 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 Total: -1.00 -73.48 396.73 2.05 -71.43 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: 0.84 Total: 15.89 kcal Atomic # 6 Polarization: -3.38 SS G_CDS: 8.53 Total: 5.15 kcal Atomic # 7 Polarization: -113.28 SS G_CDS: -5.66 Total: -118.95 kcal Atomic # 8 Polarization: -17.73 SS G_CDS: -3.33 Total: -21.07 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 1.67 Total: 47.54 kcal Total: -73.48 2.05 -71.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001555496788.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.241 kcal (2) G-P(sol) polarization free energy of solvation -73.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.37 seconds