Wall clock time and date at job start Tue Mar 31 2020 21:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 110.06721 * 2 1 4 4 C 1.53991 * 109.92036 * 238.79590 * 2 1 3 5 5 H 1.09005 * 110.30530 * 358.43356 * 4 2 1 6 6 N 1.46499 * 110.31414 * 120.50592 * 4 2 1 7 7 C 1.34777 * 120.00199 * 203.61565 * 6 4 2 8 8 O 1.21283 * 119.99750 * 359.97438 * 7 6 4 9 9 C 1.50702 * 119.99928 * 180.27479 * 7 6 4 10 10 H 1.08995 * 110.63048 * 61.36981 * 9 7 6 11 11 C 1.55138 * 110.70352 * 184.67085 * 9 7 6 12 12 C 1.54906 * 101.65189 * 154.03374 * 11 9 7 13 13 N 1.47839 * 104.79561 * 322.92967 * 12 11 9 14 14 C 1.46902 * 111.00071 * 146.36426 * 13 12 11 15 15 C 1.47436 * 108.57119 * 24.09583 * 13 12 11 16 16 C 1.54599 * 105.22816 * 239.47238 * 4 2 1 17 17 C 1.55200 * 102.79739 * 338.01159 * 16 4 2 18 18 N 1.47903 * 109.91682 * 121.20262 * 2 1 3 19 19 C 1.46899 * 111.00177 * 265.19649 * 18 2 1 20 20 C 1.50697 * 109.47322 * 189.99806 * 19 18 2 21 21 O 1.21294 * 119.99853 * 0.02562 * 20 19 18 22 22 N 1.34782 * 120.00134 * 180.02562 * 20 19 18 23 23 C 1.37093 * 119.99912 * 180.02562 * 22 20 19 24 24 H 1.08001 * 120.00314 * 359.97438 * 23 22 20 25 25 C 1.38952 * 120.00062 * 180.02562 * 23 22 20 26 26 N 1.31413 * 119.99783 * 359.97438 * 25 23 22 27 27 Si 1.86796 * 120.00214 * 179.97438 * 25 23 22 28 28 H 1.48499 * 109.47033 * 89.99723 * 27 25 23 29 29 H 1.48497 * 109.47146 * 209.99845 * 27 25 23 30 30 H 1.48505 * 109.47174 * 329.99911 * 27 25 23 31 31 H 1.08999 * 109.47149 * 181.20190 * 1 2 3 32 32 H 1.08996 * 109.47154 * 301.20528 * 1 2 3 33 33 H 1.09001 * 109.47257 * 61.20663 * 1 2 3 34 34 H 0.97000 * 119.99484 * 23.60662 * 6 4 2 35 35 H 1.09006 * 110.98833 * 272.12071 * 11 9 7 36 36 H 1.08996 * 110.99233 * 35.94482 * 11 9 7 37 37 H 1.08996 * 110.37465 * 204.09397 * 12 11 9 38 38 H 1.09008 * 110.46956 * 81.80480 * 12 11 9 39 39 H 1.09000 * 109.47138 * 299.15679 * 14 13 12 40 40 H 1.09003 * 109.47093 * 59.15724 * 14 13 12 41 41 H 1.09005 * 109.47316 * 179.15321 * 14 13 12 42 42 H 1.09003 * 109.88792 * 239.60850 * 15 13 12 43 43 H 1.09003 * 110.02870 * 118.49508 * 15 13 12 44 44 H 1.08996 * 110.72216 * 96.34549 * 16 4 2 45 45 H 1.08996 * 110.72614 * 219.63426 * 16 4 2 46 46 H 1.08997 * 110.68286 * 278.98480 * 17 16 4 47 47 H 1.09000 * 110.78347 * 155.93080 * 17 16 4 48 48 H 1.09000 * 109.47290 * 310.00180 * 19 18 2 49 49 H 1.09001 * 109.46979 * 70.00051 * 19 18 2 50 50 H 0.97003 * 119.99546 * 359.97438 * 22 20 19 51 51 H 0.96995 * 120.00046 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9040 1.0238 0.0000 4 6 2.0546 -0.7501 -1.2383 5 1 1.2227 -1.1386 -1.8258 6 7 2.8836 0.1377 -2.0573 7 6 3.0507 -0.1173 -3.3701 8 8 2.5152 -1.0821 -3.8734 9 6 3.9085 0.7925 -4.2113 10 1 4.9349 0.7999 -3.8446 11 6 3.8578 0.3697 -5.7030 12 6 4.1741 1.7069 -6.4182 13 7 3.4963 2.7392 -5.6055 14 6 4.2606 3.9938 -5.6041 15 6 3.3274 2.2220 -4.2352 16 6 2.9054 -1.9132 -0.6783 17 6 3.2681 -1.4184 0.7472 18 7 2.0338 -0.7204 1.1894 19 6 2.3211 0.2123 2.2873 20 6 3.0560 -0.5141 3.3843 21 8 3.3153 -1.6927 3.2632 22 7 3.4251 0.1460 4.4999 23 6 4.0940 -0.5147 5.4976 24 1 4.3250 -1.5642 5.3898 25 6 4.4741 0.1656 6.6481 26 7 4.1927 1.4425 6.7795 27 14 5.3850 -0.7348 8.0078 28 1 6.8477 -0.6426 7.7689 29 1 5.0572 -0.1159 9.3172 30 1 4.9741 -2.1619 8.0181 31 1 -0.3633 -1.0274 0.0216 32 1 -0.3633 0.5324 0.8789 33 1 -0.3634 0.4950 -0.9006 34 1 3.3121 0.9092 -1.6547 35 1 4.6183 -0.3799 -5.9225 36 1 2.8657 0.0078 -5.9728 37 1 3.7741 1.6988 -7.4321 38 1 5.2495 1.8841 -6.4368 39 1 5.2461 3.8184 -5.1728 40 1 4.3704 4.3534 -6.6272 41 1 3.7321 4.7405 -5.0113 42 1 2.2689 2.1963 -3.9764 43 1 3.8665 2.8533 -3.5288 44 1 2.3200 -2.8314 -0.6314 45 1 3.8039 -2.0575 -1.2782 46 1 4.1097 -0.7266 0.7121 47 1 3.4905 -2.2597 1.4037 48 1 2.9383 1.0308 1.9167 49 1 1.3856 0.6114 2.6792 50 1 3.2180 1.0887 4.5966 51 1 4.4576 1.9173 7.5827 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566113791.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:49:42 Heat of formation + Delta-G solvation = -80.287354 kcal Electronic energy + Delta-G solvation = -29976.022047 eV Core-core repulsion = 25909.182497 eV Total energy + Delta-G solvation = -4066.839550 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.62245 -40.69282 -39.56684 -38.73759 -36.07070 -35.30107 -33.40220 -33.23942 -32.24032 -32.11842 -30.09777 -28.09543 -26.95346 -26.16456 -25.81390 -23.62239 -22.34278 -21.99736 -21.47692 -21.08104 -20.64740 -19.85599 -18.41478 -17.79413 -17.44405 -17.21891 -16.58843 -16.54487 -16.28521 -16.06408 -15.75035 -15.55322 -15.17142 -15.13404 -14.89695 -14.61702 -14.40212 -14.20038 -13.85334 -13.71017 -13.53555 -13.48490 -12.98785 -12.94459 -12.87781 -12.67498 -12.58286 -12.45893 -12.44602 -12.33848 -12.27126 -12.16851 -12.14604 -12.09719 -11.83357 -11.72064 -11.45617 -10.87966 -10.27287 -10.06712 -9.99254 -9.34843 -9.32659 -8.47161 -5.95253 1.36985 1.41468 1.53666 1.55306 2.03884 2.04820 2.28470 2.83013 3.01199 3.20014 3.27799 3.38270 3.47410 3.60352 3.75853 3.88108 4.04003 4.19107 4.20694 4.28627 4.29607 4.32665 4.33325 4.45368 4.46431 4.47131 4.54390 4.56968 4.67026 4.75920 4.81779 4.84905 4.92195 4.96830 5.00540 5.02680 5.06103 5.08069 5.20423 5.25978 5.37387 5.41029 5.46790 5.85642 5.91636 5.96249 6.07194 6.12546 6.47046 6.60619 7.13095 7.17959 7.55658 8.11844 8.70183 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.016492 B = 0.002183 C = 0.002078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.394398 B =12821.768950 C =13473.198164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.060 3.940 3 H 0.077 0.923 4 C 0.146 3.854 5 H 0.093 0.907 6 N -0.711 5.711 7 C 0.527 3.473 8 O -0.575 6.575 9 C -0.128 4.128 10 H 0.122 0.878 11 C -0.109 4.109 12 C 0.044 3.956 13 N -0.550 5.550 14 C 0.018 3.982 15 C 0.056 3.944 16 C -0.125 4.125 17 C 0.045 3.955 18 N -0.505 5.505 19 C 0.050 3.950 20 C 0.439 3.561 21 O -0.614 6.614 22 N -0.572 5.572 23 C -0.330 4.330 24 H 0.078 0.922 25 C -0.012 4.012 26 N -0.920 5.920 27 Si 0.991 3.009 28 H -0.271 1.271 29 H -0.271 1.271 30 H -0.274 1.274 31 H 0.055 0.945 32 H 0.062 0.938 33 H 0.075 0.925 34 H 0.411 0.589 35 H 0.084 0.916 36 H 0.067 0.933 37 H 0.086 0.914 38 H 0.062 0.938 39 H 0.036 0.964 40 H 0.075 0.925 41 H 0.073 0.927 42 H 0.072 0.928 43 H 0.082 0.918 44 H 0.074 0.926 45 H 0.072 0.928 46 H 0.033 0.967 47 H 0.078 0.922 48 H 0.073 0.927 49 H 0.110 0.890 50 H 0.396 0.604 51 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.817 7.877 -23.563 24.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.049 4.049 3 H 0.095 0.905 4 C 0.041 3.959 5 H 0.111 0.889 6 N -0.362 5.362 7 C 0.314 3.686 8 O -0.454 6.454 9 C -0.150 4.150 10 H 0.139 0.861 11 C -0.147 4.147 12 C -0.083 4.083 13 N -0.275 5.275 14 C -0.131 4.131 15 C -0.072 4.072 16 C -0.164 4.164 17 C -0.082 4.082 18 N -0.230 5.230 19 C -0.081 4.081 20 C 0.226 3.774 21 O -0.500 6.500 22 N -0.209 5.209 23 C -0.460 4.460 24 H 0.096 0.904 25 C -0.212 4.212 26 N -0.561 5.561 27 Si 0.814 3.186 28 H -0.196 1.196 29 H -0.196 1.196 30 H -0.199 1.199 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.093 0.907 34 H 0.247 0.753 35 H 0.103 0.897 36 H 0.086 0.914 37 H 0.105 0.895 38 H 0.081 0.919 39 H 0.054 0.946 40 H 0.094 0.906 41 H 0.092 0.908 42 H 0.090 0.910 43 H 0.100 0.900 44 H 0.093 0.907 45 H 0.090 0.910 46 H 0.051 0.949 47 H 0.096 0.904 48 H 0.091 0.909 49 H 0.128 0.872 50 H 0.230 0.770 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.873 6.330 -23.843 24.740 hybrid contribution 1.913 0.648 1.411 2.464 sum 0.040 6.979 -22.432 23.492 Atomic orbital electron populations 1.21706 0.92110 1.02521 1.02435 1.22752 0.97727 0.96563 0.87847 0.90542 1.21707 0.93345 0.89862 0.91013 0.88930 1.46100 1.51305 1.30166 1.08659 1.20752 0.80583 0.85183 0.82099 1.90698 1.50310 1.31251 1.73117 1.22627 1.00486 0.95439 0.96455 0.86059 1.22561 1.03044 0.97543 0.91554 1.23107 0.97760 0.89314 0.98147 1.63561 1.48883 1.04948 1.10079 1.22618 0.95989 0.91373 1.03074 1.22777 1.01505 0.91937 0.90976 1.22902 1.00075 0.98567 0.94862 1.23276 0.90479 0.99150 0.95334 1.64567 1.27744 1.25246 1.05482 1.21989 1.00807 0.93874 0.91459 1.20726 0.83931 0.87946 0.84766 1.90452 1.60995 1.17888 1.80702 1.41908 1.50987 1.12390 1.15625 1.19631 1.33607 0.95865 0.96905 0.90358 1.26002 0.98398 0.96493 1.00328 1.69663 1.47386 1.09061 1.29940 0.84960 0.78358 0.78022 0.77210 1.19633 1.19603 1.19926 0.92614 0.91882 0.90652 0.75268 0.89725 0.91431 0.89528 0.91932 0.94576 0.90649 0.90805 0.90988 0.89965 0.90708 0.90964 0.94914 0.90378 0.90907 0.87230 0.76986 0.91316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.60 9.32 71.98 0.67 -1.93 16 2 C 0.06 1.33 2.86 45.06 0.13 1.46 16 3 H 0.08 1.42 7.04 -2.39 -0.02 1.40 16 4 C 0.15 3.32 2.95 45.87 0.14 3.45 16 5 H 0.09 2.30 7.14 -2.38 -0.02 2.28 16 6 N -0.71 -12.87 5.02 -438.36 -2.20 -15.07 16 7 C 0.53 10.88 7.01 87.66 0.61 11.49 16 8 O -0.57 -16.73 15.44 -3.04 -0.05 -16.78 16 9 C -0.13 -1.84 3.34 -10.36 -0.03 -1.87 16 10 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 11 C -0.11 -1.67 6.13 31.98 0.20 -1.47 16 12 C 0.04 0.53 6.73 86.77 0.58 1.12 16 13 N -0.55 -7.47 5.44 -911.70 -4.96 -12.44 16 14 C 0.02 0.17 9.12 127.69 1.16 1.33 16 15 C 0.06 0.71 6.43 86.65 0.56 1.27 16 16 C -0.12 -3.39 6.80 31.89 0.22 -3.18 16 17 C 0.05 1.49 5.31 86.74 0.46 1.95 16 18 N -0.51 -15.67 4.89 -862.08 -4.22 -19.89 16 19 C 0.05 1.64 5.52 85.56 0.47 2.11 16 20 C 0.44 20.21 7.49 87.66 0.66 20.87 16 21 O -0.61 -32.80 13.09 -3.07 -0.04 -32.84 16 22 N -0.57 -28.58 5.29 -306.98 -1.62 -30.20 16 23 C -0.33 -18.43 9.68 84.04 0.81 -17.62 16 24 H 0.08 4.67 7.16 -2.91 -0.02 4.65 16 25 C -0.01 -0.65 5.50 84.93 0.47 -0.19 16 26 N -0.92 -48.76 13.05 21.66 0.28 -48.47 16 27 Si 0.99 42.45 29.55 68.60 2.03 44.48 16 28 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 29 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 30 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 31 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.41 5.46 8.30 -92.71 -0.77 4.69 16 35 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 36 H 0.07 1.36 7.49 -2.39 -0.02 1.35 16 37 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.06 0.60 7.78 -2.38 -0.02 0.58 16 39 H 0.04 0.30 8.10 -2.39 -0.02 0.28 16 40 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 41 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 42 H 0.07 1.08 7.81 -2.39 -0.02 1.06 16 43 H 0.08 0.74 7.59 -2.39 -0.02 0.72 16 44 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 45 H 0.07 1.92 8.05 -2.39 -0.02 1.90 16 46 H 0.03 1.06 8.02 -2.39 -0.02 1.04 16 47 H 0.08 3.27 5.96 -2.39 -0.01 3.26 16 48 H 0.07 2.04 7.81 -2.39 -0.02 2.02 16 49 H 0.11 3.22 8.14 -2.39 -0.02 3.20 16 50 H 0.40 18.75 7.90 -92.71 -0.73 18.01 16 51 H 0.28 13.78 8.31 -92.71 -0.77 13.01 16 Total: -1.00 -70.26 403.17 -4.24 -74.50 By element: Atomic # 1 Polarization: 38.48 SS G_CDS: -0.56 Total: 37.91 kcal Atomic # 6 Polarization: 11.70 SS G_CDS: 7.10 Total: 18.80 kcal Atomic # 7 Polarization: -113.35 SS G_CDS: -12.72 Total: -126.07 kcal Atomic # 8 Polarization: -49.54 SS G_CDS: -0.09 Total: -49.62 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.48 kcal Total: -70.26 -4.24 -74.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566113791.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.790 kcal (2) G-P(sol) polarization free energy of solvation -70.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds