Wall clock time and date at job start Tue Mar 31 2020 21:39:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 115.55390 * 2 1 4 4 C 1.53002 * 117.49906 * 214.33187 * 2 1 3 5 5 C 1.53000 * 117.50194 * 145.66780 * 2 1 3 6 6 H 1.08998 * 117.49551 * 0.02562 * 5 2 1 7 7 C 1.50696 * 117.50373 * 214.99855 * 5 2 1 8 8 O 1.21281 * 119.99979 * 0.02562 * 7 5 2 9 9 N 1.34776 * 120.00342 * 179.97438 * 7 5 2 10 10 C 1.46500 * 120.00348 * 180.02562 * 9 7 5 11 11 C 1.52993 * 109.47467 * 180.02562 * 10 9 7 12 12 N 1.46891 * 109.47401 * 180.02562 * 11 10 9 13 13 C 1.46962 * 110.99855 * 293.79841 * 12 11 10 14 14 C 1.53052 * 109.36468 * 176.81302 * 13 12 11 15 15 N 1.46954 * 109.36693 * 58.39823 * 14 13 12 16 16 C 1.46897 * 111.00305 * 176.81082 * 15 14 13 17 17 C 1.50698 * 109.47478 * 190.17019 * 16 15 14 18 18 O 1.21289 * 119.99823 * 6.28494 * 17 16 15 19 19 N 1.34778 * 120.00169 * 186.27501 * 17 16 15 20 20 C 1.37094 * 119.99865 * 180.02562 * 19 17 16 21 21 H 1.07994 * 120.00097 * 0.02562 * 20 19 17 22 22 C 1.38947 * 119.99866 * 180.02562 * 20 19 17 23 23 N 1.31417 * 120.00232 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 120.00259 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47204 * 89.99754 * 24 22 20 26 26 H 1.48496 * 109.47285 * 209.99931 * 24 22 20 27 27 H 1.48507 * 109.46934 * 329.99819 * 24 22 20 28 28 C 1.46962 * 110.88147 * 300.68196 * 15 14 13 29 29 C 1.46959 * 111.00426 * 169.99992 * 12 11 10 30 30 H 1.09001 * 109.46733 * 274.41323 * 1 2 3 31 31 H 1.08995 * 109.47148 * 34.41514 * 1 2 3 32 32 H 1.08998 * 109.47154 * 154.41553 * 1 2 3 33 33 H 1.08991 * 117.49776 * 359.97267 * 4 2 1 34 34 H 1.09004 * 117.49786 * 145.00062 * 4 2 1 35 35 H 0.96997 * 119.99780 * 0.02562 * 9 7 5 36 36 H 1.08999 * 109.47055 * 300.00499 * 10 9 7 37 37 H 1.09005 * 109.46900 * 60.00224 * 10 9 7 38 38 H 1.08999 * 109.46984 * 300.00045 * 11 10 9 39 39 H 1.09000 * 109.47059 * 59.99530 * 11 10 9 40 40 H 1.08999 * 109.48971 * 296.77764 * 13 12 11 41 41 H 1.08993 * 109.48681 * 56.84557 * 13 12 11 42 42 H 1.09008 * 109.48570 * 298.43196 * 14 13 12 43 43 H 1.08993 * 109.48896 * 178.36827 * 14 13 12 44 44 H 1.09005 * 109.47010 * 310.17429 * 16 15 14 45 45 H 1.09003 * 109.47082 * 70.16734 * 16 15 14 46 46 H 0.97001 * 119.99793 * 0.02562 * 19 17 16 47 47 H 0.96993 * 120.00412 * 180.02562 * 23 22 20 48 48 H 1.08994 * 109.48699 * 299.34825 * 28 15 14 49 49 H 1.09000 * 109.48916 * 179.28712 * 28 15 14 50 50 H 1.09006 * 109.48561 * 303.15226 * 29 12 11 51 51 H 1.08999 * 109.49088 * 63.19454 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9834 0.0000 4 6 2.2364 -1.1207 -0.7654 5 6 2.2365 -1.1207 0.7654 6 1 1.6113 -1.8582 1.2686 7 6 3.5291 -0.7805 1.4614 8 8 3.9712 0.3473 1.4021 9 7 4.1933 -1.7292 2.1508 10 6 5.4496 -1.3984 2.8279 11 6 5.9939 -2.6440 3.5300 12 7 7.2532 -2.3121 4.2095 13 6 8.3031 -1.9755 3.2377 14 6 9.5723 -1.5600 3.9854 15 7 10.0028 -2.6577 4.8624 16 6 11.2622 -2.3259 5.5419 17 6 11.8005 -3.5537 6.2300 18 8 11.2580 -4.6265 6.0683 19 7 12.8847 -3.4599 7.0251 20 6 13.3747 -4.5771 7.6507 21 1 12.8921 -5.5323 7.5061 22 6 14.4922 -4.4803 8.4707 23 7 15.0791 -3.3178 8.6471 24 14 15.1603 -6.0026 9.3226 25 1 16.1662 -6.6577 8.4485 26 1 15.7985 -5.6121 10.6053 27 1 14.0471 -6.9482 9.5913 28 6 8.9529 -2.9943 5.8342 29 6 7.6838 -3.4099 5.0865 30 1 -0.3633 0.0791 1.0246 31 1 -0.3633 0.8477 -0.5808 32 1 -0.3633 -0.9269 -0.4438 33 1 1.6112 -1.8582 -1.2685 34 1 3.1714 -0.8746 -1.2689 35 1 3.8395 -2.6311 2.1985 36 1 6.1762 -1.0482 2.0948 37 1 5.2700 -0.6150 3.5643 38 1 5.2674 -2.9945 4.2631 39 1 6.1735 -3.4270 2.7934 40 1 8.5156 -2.8453 2.6161 41 1 7.9657 -1.1521 2.6085 42 1 9.3668 -0.6738 4.5861 43 1 10.3613 -1.3378 3.2670 44 1 11.9879 -1.9722 4.8095 45 1 11.0816 -1.5450 6.2807 46 1 13.3184 -2.6020 7.1546 47 1 15.8594 -3.2503 9.2192 48 1 8.7405 -2.1245 6.4558 49 1 9.2903 -3.8178 6.4635 50 1 6.8947 -3.6320 5.8050 51 1 7.8888 -4.2961 4.4860 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566651082.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:39:07 Heat of formation + Delta-G solvation = -35.100901 kcal Electronic energy + Delta-G solvation = -28563.256785 eV Core-core repulsion = 24498.376667 eV Total energy + Delta-G solvation = -4064.880118 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.38388 -39.44218 -38.04108 -37.30423 -35.87912 -34.46836 -33.76941 -31.26146 -30.85699 -30.30972 -29.15739 -27.57944 -25.46239 -24.28695 -23.75281 -23.16229 -21.85137 -21.31731 -20.34510 -19.70367 -19.15666 -17.85506 -17.81180 -16.66616 -16.14178 -15.89999 -15.63364 -15.26919 -14.96290 -14.89948 -14.70819 -14.51158 -14.37275 -14.03611 -13.83580 -13.68030 -13.60678 -13.37177 -13.19741 -13.12280 -12.51351 -12.29782 -12.17124 -11.90411 -11.85526 -11.60322 -11.51130 -11.34721 -11.12816 -11.03346 -10.85049 -10.70124 -10.62486 -10.56329 -10.39037 -10.20842 -10.14217 -9.46624 -9.39293 -8.53660 -8.38359 -7.96137 -7.83580 -6.40569 -3.81386 2.14486 2.66804 3.18290 3.26851 3.32351 3.35317 3.82768 3.92607 4.00747 4.22393 4.25591 4.27864 4.32701 4.53880 4.67714 4.79610 4.84553 4.92575 5.02893 5.14166 5.16048 5.23094 5.23288 5.26621 5.28019 5.38930 5.44079 5.46469 5.54093 5.57749 5.60519 5.65832 5.68892 5.80254 5.83989 5.90834 5.94931 5.97246 6.06395 6.20850 6.30586 6.36174 6.85863 6.91152 7.13020 7.31088 7.41651 7.56071 7.88610 8.07734 8.63397 9.19373 9.56188 10.08110 10.77216 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.047488 B = 0.001483 C = 0.001461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.478554 B =18879.924337 C =19161.589189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.121 4.121 3 H 0.118 0.882 4 C -0.149 4.149 5 C -0.193 4.193 6 H 0.123 0.877 7 C 0.543 3.457 8 O -0.539 6.539 9 N -0.726 5.726 10 C 0.121 3.879 11 C 0.046 3.954 12 N -0.537 5.537 13 C 0.056 3.944 14 C 0.056 3.944 15 N -0.517 5.517 16 C 0.047 3.953 17 C 0.444 3.556 18 O -0.578 6.578 19 N -0.565 5.565 20 C -0.299 4.299 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.929 3.071 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.270 1.270 28 C 0.058 3.942 29 C 0.063 3.937 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.058 0.942 33 H 0.105 0.895 34 H 0.099 0.901 35 H 0.401 0.599 36 H 0.069 0.931 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.041 0.959 40 H 0.044 0.956 41 H 0.079 0.921 42 H 0.040 0.960 43 H 0.078 0.922 44 H 0.089 0.911 45 H 0.047 0.953 46 H 0.392 0.608 47 H 0.271 0.729 48 H 0.033 0.967 49 H 0.103 0.897 50 H 0.077 0.923 51 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.235 5.637 -15.255 30.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.140 4.140 3 H 0.136 0.864 4 C -0.186 4.186 5 C -0.214 4.214 6 H 0.141 0.859 7 C 0.329 3.671 8 O -0.416 6.416 9 N -0.378 5.378 10 C -0.002 4.002 11 C -0.083 4.083 12 N -0.263 5.263 13 C -0.073 4.073 14 C -0.072 4.072 15 N -0.242 5.242 16 C -0.085 4.085 17 C 0.229 3.771 18 O -0.462 6.462 19 N -0.201 5.201 20 C -0.428 4.428 21 H 0.121 0.879 22 C -0.179 4.179 23 N -0.543 5.543 24 Si 0.757 3.243 25 H -0.204 1.204 26 H -0.210 1.210 27 H -0.195 1.195 28 C -0.070 4.070 29 C -0.064 4.064 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.123 0.877 34 H 0.118 0.882 35 H 0.235 0.765 36 H 0.087 0.913 37 H 0.095 0.905 38 H 0.098 0.902 39 H 0.059 0.941 40 H 0.063 0.937 41 H 0.097 0.903 42 H 0.058 0.942 43 H 0.097 0.903 44 H 0.107 0.893 45 H 0.065 0.935 46 H 0.225 0.775 47 H 0.081 0.919 48 H 0.051 0.949 49 H 0.121 0.879 50 H 0.095 0.905 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -25.080 5.772 -15.258 29.918 hybrid contribution 0.673 -0.682 0.666 1.167 sum -24.407 5.089 -14.592 28.888 Atomic orbital electron populations 1.21409 0.92140 1.02306 1.02291 1.22389 0.95289 0.95117 1.01208 0.86448 1.23130 1.03232 1.01619 0.90647 1.22321 0.97722 1.05546 0.95857 0.85867 1.19651 0.84629 0.84620 0.78205 1.90716 1.68547 1.21032 1.61292 1.45854 1.24933 1.13537 1.53464 1.21344 0.84692 0.97799 0.96409 1.22182 0.92899 0.95641 0.97589 1.62090 1.02828 1.40559 1.20790 1.22235 0.90876 1.00432 0.93707 1.22162 0.96042 0.92635 0.96411 1.61746 1.02799 1.38195 1.21459 1.21843 0.92172 0.96638 0.97805 1.19756 0.83639 0.89885 0.83809 1.90492 1.60662 1.29307 1.65770 1.41880 1.25607 1.11385 1.41279 1.19691 1.10061 0.89718 1.23375 0.87946 1.25250 0.96705 0.98123 0.97826 1.69612 1.21903 1.23723 1.39093 0.85868 0.79038 0.81023 0.78410 1.20428 1.20955 1.19456 1.22253 0.89718 1.01311 0.93760 1.22155 0.96813 0.91808 0.95647 0.91880 0.91577 0.92315 0.87702 0.88227 0.76528 0.91293 0.90450 0.90165 0.94106 0.93723 0.90324 0.94207 0.90337 0.89309 0.93463 0.77499 0.91896 0.94899 0.87937 0.90501 0.93527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.56 10.19 37.16 0.38 -0.18 16 2 C -0.12 -0.79 5.92 -90.62 -0.54 -1.33 16 3 H 0.12 0.98 7.67 -51.93 -0.40 0.58 16 4 C -0.15 -0.83 9.89 -26.69 -0.26 -1.10 16 5 C -0.19 -1.25 5.91 -91.73 -0.54 -1.80 16 6 H 0.12 0.54 8.14 -51.93 -0.42 0.11 16 7 C 0.54 5.21 7.61 -10.99 -0.08 5.13 16 8 O -0.54 -7.45 16.26 5.56 0.09 -7.36 16 9 N -0.73 -5.55 5.56 -60.30 -0.33 -5.88 16 10 C 0.12 1.11 5.61 -4.05 -0.02 1.09 16 11 C 0.05 0.40 5.07 -3.83 -0.02 0.38 16 12 N -0.54 -6.27 4.71 -234.48 -1.10 -7.37 16 13 C 0.06 0.66 5.41 -3.76 -0.02 0.64 16 14 C 0.06 0.75 5.61 -3.77 -0.02 0.73 16 15 N -0.52 -8.73 4.40 -235.91 -1.04 -9.77 16 16 C 0.05 0.85 5.45 -4.98 -0.03 0.82 16 17 C 0.44 10.45 7.34 -10.99 -0.08 10.37 16 18 O -0.58 -15.46 14.26 5.55 0.08 -15.39 16 19 N -0.56 -14.30 5.29 -10.97 -0.06 -14.36 16 20 C -0.30 -8.31 9.68 -14.94 -0.14 -8.46 16 21 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 22 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 23 N -0.90 -24.56 13.05 55.50 0.72 -23.83 16 24 Si 0.93 21.03 29.55 -169.99 -5.02 16.00 16 25 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 26 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 27 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 28 C 0.06 0.94 5.27 -3.77 -0.02 0.92 16 29 C 0.06 0.84 5.61 -3.77 -0.02 0.82 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.06 0.21 7.90 -51.93 -0.41 -0.20 16 33 H 0.10 0.39 8.05 -51.93 -0.42 -0.03 16 34 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.40 1.93 8.47 -40.82 -0.35 1.58 16 36 H 0.07 0.71 6.49 -51.93 -0.34 0.37 16 37 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.08 0.63 8.03 -51.93 -0.42 0.21 16 39 H 0.04 0.35 8.12 -51.93 -0.42 -0.07 16 40 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.08 0.81 6.34 -51.93 -0.33 0.48 16 42 H 0.04 0.53 8.14 -51.92 -0.42 0.11 16 43 H 0.08 0.96 8.07 -51.93 -0.42 0.54 16 44 H 0.09 1.46 8.02 -51.93 -0.42 1.04 16 45 H 0.05 0.80 8.12 -51.93 -0.42 0.37 16 46 H 0.39 9.53 7.90 -40.82 -0.32 9.21 16 47 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 48 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 49 H 0.10 2.00 6.09 -51.93 -0.32 1.69 16 50 H 0.08 0.89 8.07 -51.93 -0.42 0.48 16 51 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 410.53 15.07 6.19 6.19 Total: -1.00 -33.38 410.53 -10.71 -44.09 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: -8.71 Total: 9.14 kcal Atomic # 6 Polarization: 10.07 SS G_CDS: -1.52 Total: 8.55 kcal Atomic # 7 Polarization: -59.41 SS G_CDS: -1.81 Total: -61.22 kcal Atomic # 8 Polarization: -22.92 SS G_CDS: 0.17 Total: -22.75 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -33.38 -10.71 -44.09 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566651082.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.990 kcal (2) G-P(sol) polarization free energy of solvation -33.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds