Wall clock time and date at job start Tue Mar 31 2020 21:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 115.55390 * 2 1 4 4 C 1.53002 * 117.49906 * 214.33187 * 2 1 3 5 5 C 1.53000 * 117.50194 * 145.66780 * 2 1 3 6 6 H 1.08998 * 117.49551 * 0.02562 * 5 2 1 7 7 C 1.50696 * 117.50373 * 214.99855 * 5 2 1 8 8 O 1.21281 * 119.99979 * 0.02562 * 7 5 2 9 9 N 1.34776 * 120.00342 * 179.97438 * 7 5 2 10 10 C 1.46500 * 120.00348 * 180.02562 * 9 7 5 11 11 C 1.52993 * 109.47467 * 180.02562 * 10 9 7 12 12 N 1.46891 * 109.47401 * 180.02562 * 11 10 9 13 13 C 1.46962 * 110.99855 * 293.79841 * 12 11 10 14 14 C 1.53052 * 109.36468 * 176.81302 * 13 12 11 15 15 N 1.46954 * 109.36693 * 58.39823 * 14 13 12 16 16 C 1.46897 * 111.00305 * 176.81082 * 15 14 13 17 17 C 1.50698 * 109.47478 * 190.17019 * 16 15 14 18 18 O 1.21289 * 119.99823 * 6.28494 * 17 16 15 19 19 N 1.34778 * 120.00169 * 186.27501 * 17 16 15 20 20 C 1.37094 * 119.99865 * 180.02562 * 19 17 16 21 21 H 1.07994 * 120.00097 * 0.02562 * 20 19 17 22 22 C 1.38947 * 119.99866 * 180.02562 * 20 19 17 23 23 N 1.31417 * 120.00232 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 120.00259 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47204 * 89.99754 * 24 22 20 26 26 H 1.48496 * 109.47285 * 209.99931 * 24 22 20 27 27 H 1.48507 * 109.46934 * 329.99819 * 24 22 20 28 28 C 1.46962 * 110.88147 * 300.68196 * 15 14 13 29 29 C 1.46959 * 111.00426 * 169.99992 * 12 11 10 30 30 H 1.09001 * 109.46733 * 274.41323 * 1 2 3 31 31 H 1.08995 * 109.47148 * 34.41514 * 1 2 3 32 32 H 1.08998 * 109.47154 * 154.41553 * 1 2 3 33 33 H 1.08991 * 117.49776 * 359.97267 * 4 2 1 34 34 H 1.09004 * 117.49786 * 145.00062 * 4 2 1 35 35 H 0.96997 * 119.99780 * 0.02562 * 9 7 5 36 36 H 1.08999 * 109.47055 * 300.00499 * 10 9 7 37 37 H 1.09005 * 109.46900 * 60.00224 * 10 9 7 38 38 H 1.08999 * 109.46984 * 300.00045 * 11 10 9 39 39 H 1.09000 * 109.47059 * 59.99530 * 11 10 9 40 40 H 1.08999 * 109.48971 * 296.77764 * 13 12 11 41 41 H 1.08993 * 109.48681 * 56.84557 * 13 12 11 42 42 H 1.09008 * 109.48570 * 298.43196 * 14 13 12 43 43 H 1.08993 * 109.48896 * 178.36827 * 14 13 12 44 44 H 1.09005 * 109.47010 * 310.17429 * 16 15 14 45 45 H 1.09003 * 109.47082 * 70.16734 * 16 15 14 46 46 H 0.97001 * 119.99793 * 0.02562 * 19 17 16 47 47 H 0.96993 * 120.00412 * 180.02562 * 23 22 20 48 48 H 1.08994 * 109.48699 * 299.34825 * 28 15 14 49 49 H 1.09000 * 109.48916 * 179.28712 * 28 15 14 50 50 H 1.09006 * 109.48561 * 303.15226 * 29 12 11 51 51 H 1.08999 * 109.49088 * 63.19454 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9834 0.0000 4 6 2.2364 -1.1207 -0.7654 5 6 2.2365 -1.1207 0.7654 6 1 1.6113 -1.8582 1.2686 7 6 3.5291 -0.7805 1.4614 8 8 3.9712 0.3473 1.4021 9 7 4.1933 -1.7292 2.1508 10 6 5.4496 -1.3984 2.8279 11 6 5.9939 -2.6440 3.5300 12 7 7.2532 -2.3121 4.2095 13 6 8.3031 -1.9755 3.2377 14 6 9.5723 -1.5600 3.9854 15 7 10.0028 -2.6577 4.8624 16 6 11.2622 -2.3259 5.5419 17 6 11.8005 -3.5537 6.2300 18 8 11.2580 -4.6265 6.0683 19 7 12.8847 -3.4599 7.0251 20 6 13.3747 -4.5771 7.6507 21 1 12.8921 -5.5323 7.5061 22 6 14.4922 -4.4803 8.4707 23 7 15.0791 -3.3178 8.6471 24 14 15.1603 -6.0026 9.3226 25 1 16.1662 -6.6577 8.4485 26 1 15.7985 -5.6121 10.6053 27 1 14.0471 -6.9482 9.5913 28 6 8.9529 -2.9943 5.8342 29 6 7.6838 -3.4099 5.0865 30 1 -0.3633 0.0791 1.0246 31 1 -0.3633 0.8477 -0.5808 32 1 -0.3633 -0.9269 -0.4438 33 1 1.6112 -1.8582 -1.2685 34 1 3.1714 -0.8746 -1.2689 35 1 3.8395 -2.6311 2.1985 36 1 6.1762 -1.0482 2.0948 37 1 5.2700 -0.6150 3.5643 38 1 5.2674 -2.9945 4.2631 39 1 6.1735 -3.4270 2.7934 40 1 8.5156 -2.8453 2.6161 41 1 7.9657 -1.1521 2.6085 42 1 9.3668 -0.6738 4.5861 43 1 10.3613 -1.3378 3.2670 44 1 11.9879 -1.9722 4.8095 45 1 11.0816 -1.5450 6.2807 46 1 13.3184 -2.6020 7.1546 47 1 15.8594 -3.2503 9.2192 48 1 8.7405 -2.1245 6.4558 49 1 9.2903 -3.8178 6.4635 50 1 6.8947 -3.6320 5.8050 51 1 7.8888 -4.2961 4.4860 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566651082.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:39:06 Heat of formation + Delta-G solvation = -61.289268 kcal Electronic energy + Delta-G solvation = -28564.392398 eV Core-core repulsion = 24498.376667 eV Total energy + Delta-G solvation = -4066.015731 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.12252 -40.72001 -39.60511 -37.94552 -36.95645 -35.91700 -35.28919 -33.26936 -31.96478 -31.29893 -29.72870 -28.74251 -26.96683 -25.48602 -24.77585 -24.26059 -22.69280 -21.84488 -21.10917 -20.97592 -20.70544 -19.86855 -18.46090 -17.77964 -17.53567 -16.78255 -16.72686 -16.54528 -16.36686 -16.01618 -15.83142 -15.72424 -15.36833 -15.29943 -15.09145 -14.88555 -14.58835 -14.33169 -14.09189 -13.86165 -13.69820 -13.48918 -13.20549 -13.08205 -12.92298 -12.87992 -12.53959 -12.45617 -12.41227 -12.31761 -12.24787 -12.12101 -11.81855 -11.76421 -11.43614 -11.34526 -11.08425 -10.84109 -10.29059 -10.13970 -9.99369 -9.45343 -9.20306 -8.45651 -5.94374 1.38294 1.41891 1.44763 1.54550 1.98502 2.06215 2.28709 2.74664 2.84349 2.97299 3.21264 3.38864 3.69209 3.78585 3.78876 3.86928 3.88786 4.01611 4.12306 4.21936 4.23030 4.33220 4.36199 4.41981 4.42846 4.47987 4.50925 4.59071 4.61988 4.73907 4.78771 4.86342 4.87434 4.91896 4.94762 4.95193 5.03330 5.06309 5.08001 5.22056 5.35547 5.41568 5.43348 5.81712 5.89735 6.00483 6.11987 6.21192 6.50971 6.61675 7.13867 7.20994 7.57502 8.13194 8.71830 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.047488 B = 0.001483 C = 0.001461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.478554 B =18879.924337 C =19161.589189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.133 4.133 3 H 0.090 0.910 4 C -0.138 4.138 5 C -0.193 4.193 6 H 0.152 0.848 7 C 0.536 3.464 8 O -0.589 6.589 9 N -0.712 5.712 10 C 0.130 3.870 11 C 0.053 3.947 12 N -0.542 5.542 13 C 0.059 3.941 14 C 0.056 3.944 15 N -0.534 5.534 16 C 0.058 3.942 17 C 0.442 3.558 18 O -0.614 6.614 19 N -0.574 5.574 20 C -0.332 4.332 21 H 0.079 0.921 22 C -0.012 4.012 23 N -0.921 5.921 24 Si 0.993 3.007 25 H -0.271 1.271 26 H -0.271 1.271 27 H -0.272 1.272 28 C 0.060 3.940 29 C 0.074 3.926 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.132 0.868 34 H 0.086 0.914 35 H 0.417 0.583 36 H 0.058 0.942 37 H 0.060 0.940 38 H 0.096 0.904 39 H 0.050 0.950 40 H 0.038 0.962 41 H 0.096 0.904 42 H 0.044 0.956 43 H 0.092 0.908 44 H 0.110 0.890 45 H 0.063 0.937 46 H 0.395 0.605 47 H 0.277 0.723 48 H 0.035 0.965 49 H 0.064 0.936 50 H 0.095 0.905 51 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.715 5.195 -16.007 31.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.152 4.152 3 H 0.108 0.892 4 C -0.175 4.175 5 C -0.214 4.214 6 H 0.170 0.830 7 C 0.324 3.676 8 O -0.470 6.470 9 N -0.365 5.365 10 C 0.005 3.995 11 C -0.075 4.075 12 N -0.267 5.267 13 C -0.069 4.069 14 C -0.072 4.072 15 N -0.260 5.260 16 C -0.073 4.073 17 C 0.230 3.770 18 O -0.500 6.500 19 N -0.212 5.212 20 C -0.462 4.462 21 H 0.097 0.903 22 C -0.212 4.212 23 N -0.562 5.562 24 Si 0.816 3.184 25 H -0.197 1.197 26 H -0.196 1.196 27 H -0.197 1.197 28 C -0.069 4.069 29 C -0.054 4.054 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.093 0.907 33 H 0.150 0.850 34 H 0.105 0.895 35 H 0.255 0.745 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.114 0.886 39 H 0.069 0.931 40 H 0.056 0.944 41 H 0.114 0.886 42 H 0.062 0.938 43 H 0.110 0.890 44 H 0.128 0.872 45 H 0.081 0.919 46 H 0.229 0.771 47 H 0.087 0.913 48 H 0.053 0.947 49 H 0.082 0.918 50 H 0.113 0.887 51 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -26.578 5.321 -16.019 31.485 hybrid contribution 1.104 -0.509 0.861 1.490 sum -25.474 4.812 -15.159 30.031 Atomic orbital electron populations 1.21396 0.90379 1.03306 1.02556 1.22401 0.96586 0.94137 1.02044 0.89175 1.23209 1.02876 1.01462 0.89935 1.22389 0.96391 1.06189 0.96394 0.83024 1.20254 0.85430 0.84033 0.77871 1.90694 1.69996 1.23148 1.63167 1.45732 1.24162 1.14148 1.52409 1.21137 0.85093 0.97474 0.95751 1.22161 0.91777 0.95533 0.98014 1.62059 1.03692 1.39840 1.21159 1.22226 0.90367 1.00776 0.93520 1.22269 0.97265 0.91549 0.96073 1.61733 1.02453 1.40097 1.21693 1.21718 0.93334 0.93873 0.98366 1.20725 0.82438 0.91196 0.82683 1.90466 1.61414 1.31417 1.66661 1.41943 1.26387 1.10932 1.41935 1.19662 1.11321 0.89840 1.25374 0.90263 1.26024 0.96307 1.01087 0.97787 1.69676 1.22136 1.25138 1.39293 0.84935 0.78229 0.77479 0.77734 1.19685 1.19601 1.19724 1.22132 0.90918 0.99913 0.93900 1.22000 0.95895 0.91597 0.95921 0.91852 0.91370 0.90657 0.85040 0.89502 0.74550 0.92371 0.92111 0.88555 0.93137 0.94389 0.88551 0.93776 0.88966 0.87163 0.91878 0.77111 0.91350 0.94662 0.91799 0.88703 0.94848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.86 10.19 71.98 0.73 -0.12 16 2 C -0.13 -1.61 5.92 -10.79 -0.06 -1.68 16 3 H 0.09 1.59 7.67 -2.38 -0.02 1.57 16 4 C -0.14 -1.29 9.89 30.62 0.30 -0.98 16 5 C -0.19 -2.15 5.91 -11.51 -0.07 -2.22 16 6 H 0.15 0.81 8.14 -2.39 -0.02 0.79 16 7 C 0.54 9.87 7.61 87.66 0.67 10.54 16 8 O -0.59 -16.64 16.26 -3.03 -0.05 -16.69 16 9 N -0.71 -9.68 5.56 -463.07 -2.57 -12.26 16 10 C 0.13 2.20 5.61 86.38 0.48 2.69 16 11 C 0.05 0.82 5.07 86.30 0.44 1.26 16 12 N -0.54 -11.74 4.71 -895.74 -4.22 -15.96 16 13 C 0.06 1.30 5.41 86.31 0.47 1.77 16 14 C 0.06 1.41 5.61 86.31 0.48 1.90 16 15 N -0.53 -17.76 4.40 -900.29 -3.96 -21.72 16 16 C 0.06 2.08 5.45 85.56 0.47 2.55 16 17 C 0.44 21.28 7.34 87.66 0.64 21.92 16 18 O -0.61 -33.94 14.26 -3.06 -0.04 -33.99 16 19 N -0.57 -29.76 5.29 -307.00 -1.62 -31.39 16 20 C -0.33 -18.97 9.68 84.04 0.81 -18.16 16 21 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 22 C -0.01 -0.67 5.50 84.92 0.47 -0.20 16 23 N -0.92 -50.05 13.05 21.66 0.28 -49.76 16 24 Si 0.99 43.07 29.55 68.60 2.03 45.10 16 25 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 26 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 27 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 28 C 0.06 1.96 5.27 86.31 0.45 2.41 16 29 C 0.07 1.90 5.61 86.31 0.48 2.38 16 30 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.07 0.45 8.14 -2.39 -0.02 0.44 16 32 H 0.07 0.30 7.90 -2.39 -0.02 0.28 16 33 H 0.13 0.54 8.05 -2.39 -0.02 0.52 16 34 H 0.09 1.05 8.14 -2.38 -0.02 1.03 16 35 H 0.42 2.88 8.47 -92.71 -0.79 2.10 16 36 H 0.06 1.13 6.49 -2.39 -0.02 1.12 16 37 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 38 H 0.10 1.22 8.03 -2.39 -0.02 1.20 16 39 H 0.05 0.73 8.12 -2.39 -0.02 0.71 16 40 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.10 1.80 6.34 -2.39 -0.02 1.79 16 42 H 0.04 1.09 8.14 -2.38 -0.02 1.07 16 43 H 0.09 2.06 8.07 -2.39 -0.02 2.04 16 44 H 0.11 3.46 8.02 -2.38 -0.02 3.45 16 45 H 0.06 2.07 8.12 -2.39 -0.02 2.05 16 46 H 0.40 19.54 7.90 -92.71 -0.73 18.81 16 47 H 0.28 14.09 8.31 -92.71 -0.77 13.32 16 48 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 49 H 0.06 2.59 6.09 -2.39 -0.01 2.58 16 50 H 0.09 2.07 8.07 -2.38 -0.02 2.05 16 51 H 0.03 0.94 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -74.68 410.53 -3.97 -78.65 By element: Atomic # 1 Polarization: 34.55 SS G_CDS: -0.58 Total: 33.97 kcal Atomic # 6 Polarization: 17.27 SS G_CDS: 6.77 Total: 24.04 kcal Atomic # 7 Polarization: -118.99 SS G_CDS: -12.09 Total: -131.09 kcal Atomic # 8 Polarization: -50.58 SS G_CDS: -0.09 Total: -50.67 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -74.68 -3.97 -78.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566651082.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.357 kcal (2) G-P(sol) polarization free energy of solvation -74.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds