Wall clock time and date at job start Tue Mar 31 2020 22:40:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47375 * 2 1 4 4 C 1.53005 * 109.46882 * 120.00409 * 2 1 3 5 5 C 1.50701 * 109.46750 * 184.99745 * 4 2 1 6 6 O 1.21284 * 119.99907 * 359.97438 * 5 4 2 7 7 N 1.34781 * 119.99651 * 179.97438 * 5 4 2 8 8 C 1.48179 * 127.80465 * 359.97408 * 7 5 4 9 9 C 1.54508 * 104.63589 * 140.70392 * 8 7 5 10 10 C 1.53817 * 104.79248 * 23.78117 * 9 8 7 11 11 C 1.48249 * 127.80007 * 179.97438 * 7 5 4 12 12 C 1.52484 * 110.24348 * 241.00759 * 10 9 8 13 13 C 1.53127 * 109.61121 * 177.89670 * 12 10 9 14 14 C 1.53182 * 109.28889 * 60.50138 * 13 12 10 15 15 N 1.46933 * 108.88685 * 304.90805 * 14 13 12 16 16 C 1.36930 * 120.68160 * 234.05378 * 15 14 13 17 17 H 1.08005 * 119.99853 * 27.35856 * 16 15 14 18 18 C 1.38818 * 120.00389 * 207.35121 * 16 15 14 19 19 N 1.31619 * 119.99516 * 17.24363 * 18 16 15 20 20 Si 1.86789 * 120.00309 * 197.24312 * 18 16 15 21 21 H 1.48500 * 109.47522 * 59.99930 * 20 18 16 22 22 H 1.48498 * 109.47294 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.47204 * 300.00126 * 20 18 16 24 24 C 1.47036 * 118.63749 * 54.03713 * 15 14 13 25 25 N 1.46498 * 109.46723 * 239.99800 * 2 1 3 26 26 C 1.34776 * 120.00093 * 85.00356 * 25 2 1 27 27 N 1.34777 * 120.00414 * 179.97438 * 26 25 2 28 28 O 1.21586 * 119.99685 * 0.02562 * 26 25 2 29 29 H 1.08997 * 109.46640 * 300.00176 * 1 2 3 30 30 H 1.09004 * 109.46745 * 59.99819 * 1 2 3 31 31 H 1.09000 * 109.47375 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.46978 * 64.99813 * 4 2 1 33 33 H 1.09002 * 109.46807 * 304.99295 * 4 2 1 34 34 H 1.09003 * 110.40413 * 21.91203 * 8 7 5 35 35 H 1.08999 * 110.40467 * 259.49348 * 8 7 5 36 36 H 1.09004 * 110.37105 * 264.95218 * 9 8 7 37 37 H 1.08997 * 110.46825 * 142.65888 * 9 8 7 38 38 H 1.09001 * 110.42227 * 100.40345 * 11 7 5 39 39 H 1.09000 * 110.42694 * 337.92183 * 11 7 5 40 40 H 1.09001 * 109.44475 * 57.85980 * 12 10 9 41 41 H 1.08989 * 109.42652 * 297.92748 * 12 10 9 42 42 H 1.09002 * 109.50340 * 300.55500 * 13 12 10 43 43 H 1.09002 * 109.52902 * 180.46118 * 13 12 10 44 44 H 1.09003 * 109.56628 * 185.08876 * 14 13 12 45 45 H 1.08995 * 109.57014 * 64.73256 * 14 13 12 46 46 H 0.97000 * 120.00014 * 179.97438 * 19 18 16 47 47 H 1.09000 * 109.58235 * 67.02980 * 24 15 14 48 48 H 1.08996 * 109.58214 * 187.44261 * 24 15 14 49 49 H 0.97000 * 120.00513 * 265.00421 * 25 2 1 50 50 H 0.97001 * 119.99780 * 359.97438 * 27 26 25 51 51 H 0.96999 * 120.00208 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5419 -0.6151 1.3127 6 8 4.1450 -0.0213 0.4440 7 7 4.2149 -1.1799 2.3348 8 6 3.6585 -1.9387 3.4795 9 6 4.6574 -3.0960 3.7032 10 6 5.9819 -2.5929 3.1044 11 6 5.6789 -1.1823 2.5677 12 6 6.4261 -3.5045 1.9657 13 6 7.7170 -2.9616 1.3464 14 6 8.8140 -2.9240 2.4148 15 7 8.3327 -2.1443 3.5635 16 6 9.0582 -1.0868 4.0434 17 1 9.7131 -0.5373 3.3833 18 6 8.9520 -0.7208 5.3782 19 7 8.4411 -1.5618 6.2524 20 14 9.5339 0.9649 5.9337 21 1 8.7708 2.0147 5.2122 22 1 9.3131 1.1080 7.3952 23 1 10.9813 1.1120 5.6356 24 6 7.0559 -2.5226 4.1867 25 7 2.0183 -0.6907 -1.1962 26 6 2.1470 -0.0184 -2.3571 27 7 2.5967 -0.6536 -3.4575 28 8 1.8584 1.1615 -2.4116 29 1 -0.3632 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.7516 -1.7716 1.2055 33 1 1.6054 -0.2618 2.1370 34 1 2.6719 -2.3306 3.2321 35 1 3.6057 -1.3057 4.3653 36 1 4.3218 -3.9929 3.1824 37 1 4.7746 -3.2979 4.7679 38 1 5.9477 -0.4280 3.3072 39 1 6.2130 -1.0079 1.6336 40 1 5.6462 -3.5413 1.2050 41 1 6.6033 -4.5079 2.3526 42 1 7.5433 -1.9543 0.9676 43 1 8.0288 -3.6096 0.5273 44 1 9.7079 -2.4548 2.0039 45 1 9.0469 -3.9396 2.7348 46 1 8.3672 -1.3063 7.1852 47 1 7.1572 -3.4970 4.6647 48 1 6.7769 -1.7761 4.9302 49 1 2.2489 -1.6318 -1.1527 50 1 2.8280 -1.5946 -3.4138 51 1 2.6897 -0.1696 -4.2930 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569465933.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:58 Heat of formation + Delta-G solvation = -48.157402 kcal Electronic energy + Delta-G solvation = -31365.448443 eV Core-core repulsion = 27300.002152 eV Total energy + Delta-G solvation = -4065.446291 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -40.37634 -39.74531 -38.37166 -35.97862 -35.54025 -33.76499 -33.09512 -31.69531 -30.88428 -30.03311 -28.89860 -28.34468 -25.40184 -25.31145 -23.21011 -22.44660 -22.13810 -20.80290 -20.42669 -19.17906 -18.33875 -18.08563 -17.25646 -16.93364 -16.75068 -15.90229 -15.37569 -15.24291 -14.99781 -14.68874 -14.24573 -14.05123 -14.00214 -13.85150 -13.48211 -13.22129 -13.06965 -12.78787 -12.71799 -12.52982 -12.29463 -12.12829 -12.00682 -11.81500 -11.51595 -11.20293 -11.05590 -11.02842 -10.85873 -10.69708 -10.42116 -10.31403 -10.28370 -10.16148 -9.78905 -9.74697 -9.65883 -9.49316 -9.43978 -9.05916 -8.51025 -8.39280 -6.70027 -5.82465 -3.23125 2.77460 2.88015 3.15208 3.27306 3.37738 3.43136 3.46278 4.37366 4.46499 4.50311 4.53536 4.88546 4.96452 5.01436 5.14616 5.23181 5.28548 5.35096 5.37760 5.48562 5.49257 5.54322 5.61827 5.65038 5.78580 5.84924 6.01792 6.06961 6.08651 6.12023 6.19653 6.25629 6.33933 6.39498 6.46454 6.48793 6.63446 6.65884 6.75066 6.81085 6.85014 6.90528 7.00816 7.26209 7.55771 7.77749 7.82439 7.91792 8.36894 8.41045 8.62496 9.18315 9.81477 10.38376 11.26222 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.014496 B = 0.003048 C = 0.003001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.155543 B = 9184.767514 C = 9327.517686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.176 3.824 3 H 0.096 0.904 4 C -0.147 4.147 5 C 0.524 3.476 6 O -0.534 6.534 7 N -0.624 5.624 8 C 0.101 3.899 9 C -0.124 4.124 10 C -0.094 4.094 11 C 0.127 3.873 12 C -0.090 4.090 13 C -0.139 4.139 14 C 0.145 3.855 15 N -0.591 5.591 16 C -0.250 4.250 17 H 0.065 0.935 18 C 0.004 3.996 19 N -0.904 5.904 20 Si 0.899 3.101 21 H -0.283 1.283 22 H -0.290 1.290 23 H -0.283 1.283 24 C 0.189 3.811 25 N -0.728 5.728 26 C 0.713 3.287 27 N -0.870 5.870 28 O -0.598 6.598 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.095 0.905 33 H 0.107 0.893 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.065 0.935 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.081 0.919 40 H 0.042 0.958 41 H 0.055 0.945 42 H 0.060 0.940 43 H 0.049 0.951 44 H 0.052 0.948 45 H 0.017 0.983 46 H 0.254 0.746 47 H 0.021 0.979 48 H 0.090 0.910 49 H 0.392 0.608 50 H 0.395 0.605 51 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.152 -6.200 -10.249 20.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.070 3.930 3 H 0.115 0.885 4 C -0.188 4.188 5 C 0.312 3.688 6 O -0.410 6.410 7 N -0.358 5.358 8 C -0.022 4.022 9 C -0.163 4.163 10 C -0.097 4.097 11 C 0.006 3.994 12 C -0.128 4.128 13 C -0.178 4.178 14 C 0.019 3.981 15 N -0.313 5.313 16 C -0.380 4.380 17 H 0.083 0.917 18 C -0.195 4.195 19 N -0.549 5.549 20 Si 0.729 3.271 21 H -0.210 1.210 22 H -0.216 1.216 23 H -0.209 1.209 24 C 0.062 3.938 25 N -0.383 5.383 26 C 0.411 3.589 27 N -0.438 5.438 28 O -0.476 6.476 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.113 0.887 33 H 0.125 0.875 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.084 0.916 37 H 0.100 0.900 38 H 0.094 0.906 39 H 0.099 0.901 40 H 0.061 0.939 41 H 0.074 0.926 42 H 0.079 0.921 43 H 0.067 0.933 44 H 0.071 0.929 45 H 0.035 0.965 46 H 0.064 0.936 47 H 0.039 0.961 48 H 0.108 0.892 49 H 0.225 0.775 50 H 0.222 0.778 51 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -16.163 -4.774 -10.472 19.842 hybrid contribution 0.623 -0.047 0.227 0.664 sum -15.541 -4.821 -10.246 19.228 Atomic orbital electron populations 1.22215 0.95008 1.02045 1.02893 1.20517 0.92984 0.97910 0.81608 0.88546 1.22041 0.93395 1.03201 1.00128 1.20097 0.89260 0.78807 0.80606 1.90759 1.70039 1.42201 1.38048 1.49241 1.09496 1.53813 1.23230 1.22427 0.97160 0.93509 0.89103 1.22533 0.94752 0.96881 1.02140 1.21854 0.95978 0.93817 0.98033 1.22431 0.78065 0.97253 1.01653 1.21312 0.96760 0.98203 0.96488 1.22113 0.96856 1.00453 0.98382 1.20902 0.94320 0.94570 0.88340 1.44050 1.19703 1.33893 1.33692 1.19147 1.22151 1.04760 0.91896 0.91729 1.24979 1.00652 0.98279 0.95561 1.70009 1.49581 1.33493 1.01784 0.86422 0.78776 0.84620 0.77325 1.20988 1.21630 1.20879 1.20784 0.82410 0.99491 0.91095 1.44928 1.71322 1.13185 1.08872 1.15848 0.77653 0.84800 0.80579 1.42958 1.73796 1.14805 1.12228 1.90941 1.57627 1.14301 1.84714 0.91441 0.91666 0.92520 0.88699 0.87483 0.91061 0.90973 0.91621 0.89964 0.90642 0.90074 0.93896 0.92624 0.92107 0.93263 0.92942 0.96540 0.93614 0.96063 0.89185 0.77482 0.77796 0.75630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.38 9.48 37.16 0.35 -1.03 16 2 C 0.18 1.91 2.14 -67.93 -0.15 1.77 16 3 H 0.10 1.40 7.39 -51.93 -0.38 1.02 16 4 C -0.15 -1.39 4.22 -27.88 -0.12 -1.51 16 5 C 0.52 7.58 7.78 -10.98 -0.09 7.50 16 6 O -0.53 -10.03 15.62 5.55 0.09 -9.94 16 7 N -0.62 -9.11 3.32 -169.40 -0.56 -9.67 16 8 C 0.10 1.18 6.92 -2.33 -0.02 1.16 16 9 C -0.12 -1.64 6.29 -25.51 -0.16 -1.80 16 10 C -0.09 -1.59 0.68 -154.05 -0.11 -1.70 16 11 C 0.13 2.30 5.78 -2.59 -0.01 2.29 16 12 C -0.09 -1.44 4.48 -26.93 -0.12 -1.56 16 13 C -0.14 -2.40 5.88 -26.57 -0.16 -2.56 16 14 C 0.15 2.97 6.50 -3.71 -0.02 2.94 16 15 N -0.59 -14.08 2.82 -172.57 -0.49 -14.57 16 16 C -0.25 -6.65 9.59 -15.06 -0.14 -6.80 16 17 H 0.06 1.72 7.89 -52.48 -0.41 1.31 16 18 C 0.00 0.10 4.92 -17.43 -0.09 0.01 16 19 N -0.90 -25.09 11.18 55.49 0.62 -24.47 16 20 Si 0.90 21.44 29.59 -169.99 -5.03 16.41 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 24 C 0.19 4.09 3.67 -3.93 -0.01 4.08 16 25 N -0.73 -7.90 4.22 -58.67 -0.25 -8.14 16 26 C 0.71 9.36 8.80 -86.92 -0.77 8.60 16 27 N -0.87 -7.64 8.88 27.63 0.25 -7.39 16 28 O -0.60 -10.56 16.84 5.29 0.09 -10.47 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.09 0.66 7.95 -51.93 -0.41 0.25 16 33 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.07 0.59 7.31 -51.93 -0.38 0.21 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.07 0.76 7.70 -51.93 -0.40 0.36 16 37 H 0.08 1.11 7.70 -51.93 -0.40 0.71 16 38 H 0.08 1.57 7.73 -51.93 -0.40 1.17 16 39 H 0.08 1.64 5.62 -51.93 -0.29 1.35 16 40 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.06 1.14 6.19 -51.93 -0.32 0.82 16 43 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.05 1.07 7.93 -51.93 -0.41 0.66 16 45 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 47 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.09 2.21 5.90 -51.93 -0.31 1.90 16 49 H 0.39 3.32 8.62 -40.82 -0.35 2.97 16 50 H 0.39 2.28 8.84 -40.82 -0.36 1.92 16 51 H 0.41 3.19 8.93 -40.82 -0.36 2.83 16 LS Contribution 396.34 15.07 5.97 5.97 Total: -1.00 -34.59 396.34 -9.48 -44.07 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: -8.56 Total: 6.81 kcal Atomic # 6 Polarization: 13.00 SS G_CDS: -1.60 Total: 11.40 kcal Atomic # 7 Polarization: -63.81 SS G_CDS: -0.43 Total: -64.25 kcal Atomic # 8 Polarization: -20.59 SS G_CDS: 0.18 Total: -20.41 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.03 Total: 16.41 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.59 -9.48 -44.07 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569465933.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.085 kcal (2) G-P(sol) polarization free energy of solvation -34.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds