Wall clock time and date at job start Tue Mar 31 2020 22:40:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47375 * 2 1 4 4 C 1.53005 * 109.46882 * 120.00409 * 2 1 3 5 5 C 1.50701 * 109.46750 * 184.99745 * 4 2 1 6 6 O 1.21284 * 119.99907 * 359.97438 * 5 4 2 7 7 N 1.34781 * 119.99651 * 179.97438 * 5 4 2 8 8 C 1.48179 * 127.80465 * 359.97408 * 7 5 4 9 9 C 1.54508 * 104.63589 * 140.70392 * 8 7 5 10 10 C 1.53817 * 104.79248 * 23.78117 * 9 8 7 11 11 C 1.48249 * 127.80007 * 179.97438 * 7 5 4 12 12 C 1.52484 * 110.24348 * 241.00759 * 10 9 8 13 13 C 1.53127 * 109.61121 * 177.89670 * 12 10 9 14 14 C 1.53182 * 109.28889 * 60.50138 * 13 12 10 15 15 N 1.46933 * 108.88685 * 304.90805 * 14 13 12 16 16 C 1.36930 * 120.68160 * 234.05378 * 15 14 13 17 17 H 1.08005 * 119.99853 * 27.35856 * 16 15 14 18 18 C 1.38818 * 120.00389 * 207.35121 * 16 15 14 19 19 N 1.31619 * 119.99516 * 17.24363 * 18 16 15 20 20 Si 1.86789 * 120.00309 * 197.24312 * 18 16 15 21 21 H 1.48500 * 109.47522 * 59.99930 * 20 18 16 22 22 H 1.48498 * 109.47294 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.47204 * 300.00126 * 20 18 16 24 24 C 1.47036 * 118.63749 * 54.03713 * 15 14 13 25 25 N 1.46498 * 109.46723 * 239.99800 * 2 1 3 26 26 C 1.34776 * 120.00093 * 85.00356 * 25 2 1 27 27 N 1.34777 * 120.00414 * 179.97438 * 26 25 2 28 28 O 1.21586 * 119.99685 * 0.02562 * 26 25 2 29 29 H 1.08997 * 109.46640 * 300.00176 * 1 2 3 30 30 H 1.09004 * 109.46745 * 59.99819 * 1 2 3 31 31 H 1.09000 * 109.47375 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.46978 * 64.99813 * 4 2 1 33 33 H 1.09002 * 109.46807 * 304.99295 * 4 2 1 34 34 H 1.09003 * 110.40413 * 21.91203 * 8 7 5 35 35 H 1.08999 * 110.40467 * 259.49348 * 8 7 5 36 36 H 1.09004 * 110.37105 * 264.95218 * 9 8 7 37 37 H 1.08997 * 110.46825 * 142.65888 * 9 8 7 38 38 H 1.09001 * 110.42227 * 100.40345 * 11 7 5 39 39 H 1.09000 * 110.42694 * 337.92183 * 11 7 5 40 40 H 1.09001 * 109.44475 * 57.85980 * 12 10 9 41 41 H 1.08989 * 109.42652 * 297.92748 * 12 10 9 42 42 H 1.09002 * 109.50340 * 300.55500 * 13 12 10 43 43 H 1.09002 * 109.52902 * 180.46118 * 13 12 10 44 44 H 1.09003 * 109.56628 * 185.08876 * 14 13 12 45 45 H 1.08995 * 109.57014 * 64.73256 * 14 13 12 46 46 H 0.97000 * 120.00014 * 179.97438 * 19 18 16 47 47 H 1.09000 * 109.58235 * 67.02980 * 24 15 14 48 48 H 1.08996 * 109.58214 * 187.44261 * 24 15 14 49 49 H 0.97000 * 120.00513 * 265.00421 * 25 2 1 50 50 H 0.97001 * 119.99780 * 359.97438 * 27 26 25 51 51 H 0.96999 * 120.00208 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5419 -0.6151 1.3127 6 8 4.1450 -0.0213 0.4440 7 7 4.2149 -1.1799 2.3348 8 6 3.6585 -1.9387 3.4795 9 6 4.6574 -3.0960 3.7032 10 6 5.9819 -2.5929 3.1044 11 6 5.6789 -1.1823 2.5677 12 6 6.4261 -3.5045 1.9657 13 6 7.7170 -2.9616 1.3464 14 6 8.8140 -2.9240 2.4148 15 7 8.3327 -2.1443 3.5635 16 6 9.0582 -1.0868 4.0434 17 1 9.7131 -0.5373 3.3833 18 6 8.9520 -0.7208 5.3782 19 7 8.4411 -1.5618 6.2524 20 14 9.5339 0.9649 5.9337 21 1 8.7708 2.0147 5.2122 22 1 9.3131 1.1080 7.3952 23 1 10.9813 1.1120 5.6356 24 6 7.0559 -2.5226 4.1867 25 7 2.0183 -0.6907 -1.1962 26 6 2.1470 -0.0184 -2.3571 27 7 2.5967 -0.6536 -3.4575 28 8 1.8584 1.1615 -2.4116 29 1 -0.3632 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.7516 -1.7716 1.2055 33 1 1.6054 -0.2618 2.1370 34 1 2.6719 -2.3306 3.2321 35 1 3.6057 -1.3057 4.3653 36 1 4.3218 -3.9929 3.1824 37 1 4.7746 -3.2979 4.7679 38 1 5.9477 -0.4280 3.3072 39 1 6.2130 -1.0079 1.6336 40 1 5.6462 -3.5413 1.2050 41 1 6.6033 -4.5079 2.3526 42 1 7.5433 -1.9543 0.9676 43 1 8.0288 -3.6096 0.5273 44 1 9.7079 -2.4548 2.0039 45 1 9.0469 -3.9396 2.7348 46 1 8.3672 -1.3063 7.1852 47 1 7.1572 -3.4970 4.6647 48 1 6.7769 -1.7761 4.9302 49 1 2.2489 -1.6318 -1.1527 50 1 2.8280 -1.5946 -3.4138 51 1 2.6897 -0.1696 -4.2930 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569465933.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:57 Heat of formation + Delta-G solvation = -74.600865 kcal Electronic energy + Delta-G solvation = -31366.595118 eV Core-core repulsion = 27300.002152 eV Total energy + Delta-G solvation = -4066.592965 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.52277 -40.83779 -39.65847 -37.33963 -36.60605 -34.85386 -34.70512 -33.06733 -31.85374 -31.74552 -30.09270 -29.28517 -27.26125 -26.62296 -24.42590 -23.92930 -23.25068 -21.92845 -21.71428 -20.24374 -19.60630 -19.22738 -18.62226 -18.13358 -18.02114 -17.01775 -16.66945 -16.41830 -16.30519 -15.89929 -15.76987 -15.49671 -15.26768 -15.06821 -14.75314 -14.55368 -14.35294 -14.08364 -14.04731 -13.68341 -13.35833 -13.20769 -13.04183 -12.90425 -12.79666 -12.77433 -12.65393 -12.44424 -12.41685 -12.12031 -11.96986 -11.90042 -11.72916 -11.39764 -11.37062 -11.03999 -11.01652 -10.79936 -10.67133 -10.52379 -9.90585 -9.63757 -8.65037 -7.88096 -5.30298 1.42959 1.45392 1.51572 1.70839 2.02403 2.03862 2.30474 2.49236 3.24952 3.46456 3.65461 3.69548 3.75225 3.85766 3.91408 3.97142 4.23381 4.28899 4.33249 4.40556 4.44364 4.57006 4.61558 4.64866 4.70503 4.71228 4.82446 4.84838 4.88155 4.96558 4.98552 5.09331 5.11009 5.15214 5.18541 5.28951 5.34355 5.37568 5.38000 5.52281 5.61695 5.64046 5.68540 5.78837 5.92950 6.07257 6.39477 6.72245 7.15346 7.16525 7.24756 7.72841 7.87819 8.38459 9.17484 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.014496 B = 0.003048 C = 0.003001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.155543 B = 9184.767514 C = 9327.517686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.172 3.828 3 H 0.049 0.951 4 C -0.130 4.130 5 C 0.519 3.481 6 O -0.586 6.586 7 N -0.621 5.621 8 C 0.103 3.897 9 C -0.119 4.119 10 C -0.087 4.087 11 C 0.136 3.864 12 C -0.084 4.084 13 C -0.130 4.130 14 C 0.141 3.859 15 N -0.610 5.610 16 C -0.261 4.261 17 H 0.055 0.945 18 C -0.040 4.040 19 N -0.926 5.926 20 Si 0.953 3.047 21 H -0.287 1.287 22 H -0.288 1.288 23 H -0.278 1.278 24 C 0.199 3.801 25 N -0.719 5.719 26 C 0.701 3.299 27 N -0.853 5.853 28 O -0.652 6.652 29 H 0.084 0.916 30 H 0.040 0.960 31 H 0.084 0.916 32 H 0.139 0.861 33 H 0.135 0.865 34 H 0.124 0.876 35 H 0.069 0.931 36 H 0.097 0.903 37 H 0.077 0.923 38 H 0.034 0.966 39 H 0.054 0.946 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.041 0.959 43 H 0.078 0.922 44 H 0.043 0.957 45 H 0.019 0.981 46 H 0.251 0.749 47 H 0.002 0.998 48 H 0.056 0.944 49 H 0.406 0.594 50 H 0.412 0.588 51 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.869 -8.567 -10.684 23.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.066 3.934 3 H 0.068 0.932 4 C -0.170 4.170 5 C 0.310 3.690 6 O -0.466 6.466 7 N -0.355 5.355 8 C -0.019 4.019 9 C -0.158 4.158 10 C -0.089 4.089 11 C 0.013 3.987 12 C -0.121 4.121 13 C -0.168 4.168 14 C 0.015 3.985 15 N -0.333 5.333 16 C -0.391 4.391 17 H 0.073 0.927 18 C -0.236 4.236 19 N -0.572 5.572 20 Si 0.782 3.218 21 H -0.214 1.214 22 H -0.214 1.214 23 H -0.204 1.204 24 C 0.074 3.926 25 N -0.375 5.375 26 C 0.399 3.601 27 N -0.421 5.421 28 O -0.534 6.534 29 H 0.103 0.897 30 H 0.059 0.941 31 H 0.103 0.897 32 H 0.157 0.843 33 H 0.153 0.847 34 H 0.142 0.858 35 H 0.087 0.913 36 H 0.115 0.885 37 H 0.096 0.904 38 H 0.052 0.948 39 H 0.073 0.927 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.060 0.940 43 H 0.097 0.903 44 H 0.062 0.938 45 H 0.037 0.963 46 H 0.060 0.940 47 H 0.020 0.980 48 H 0.074 0.926 49 H 0.242 0.758 50 H 0.242 0.758 51 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -18.887 -7.223 -10.913 22.978 hybrid contribution 1.567 0.689 0.324 1.742 sum -17.320 -6.534 -10.588 21.326 Atomic orbital electron populations 1.22117 0.92673 1.03690 1.02569 1.20527 0.94647 0.95851 0.82343 0.93227 1.22074 0.88787 1.05913 1.00240 1.21088 0.91251 0.77295 0.79402 1.90749 1.71531 1.44237 1.40066 1.49289 1.07749 1.54158 1.24264 1.22636 0.98906 0.92442 0.87928 1.22535 0.92626 0.98626 1.01974 1.21640 0.96513 0.93743 0.97047 1.21981 0.80826 0.96905 0.99021 1.21284 0.96440 0.98026 0.96353 1.21988 0.96600 1.00231 0.98015 1.21030 0.95385 0.93889 0.88165 1.44309 1.20588 1.33890 1.34499 1.19350 1.22082 1.05687 0.92022 0.92698 1.25548 1.01468 1.00915 0.95652 1.70126 1.50781 1.34656 1.01670 0.85563 0.78342 0.81161 0.76737 1.21360 1.21400 1.20436 1.20573 0.83133 0.96972 0.91963 1.44859 1.70678 1.13721 1.08212 1.16197 0.77696 0.84391 0.81825 1.42779 1.72397 1.15600 1.11347 1.90900 1.60037 1.16827 1.85686 0.89736 0.94114 0.89739 0.84294 0.84702 0.85775 0.91267 0.88495 0.90431 0.94787 0.92734 0.91508 0.91493 0.94047 0.90319 0.93837 0.96314 0.93986 0.97952 0.92610 0.75795 0.75797 0.75045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.48 71.98 0.68 -1.45 16 2 C 0.17 3.42 2.14 45.00 0.10 3.52 16 3 H 0.05 1.47 7.39 -2.39 -0.02 1.46 16 4 C -0.13 -1.91 4.22 29.85 0.13 -1.78 16 5 C 0.52 13.95 7.78 87.66 0.68 14.63 16 6 O -0.59 -22.09 15.62 -3.04 -0.05 -22.13 16 7 N -0.62 -16.88 3.32 -808.23 -2.68 -19.56 16 8 C 0.10 1.98 6.92 86.57 0.60 2.58 16 9 C -0.12 -2.76 6.29 31.38 0.20 -2.56 16 10 C -0.09 -2.86 0.68 -51.88 -0.04 -2.90 16 11 C 0.14 4.98 5.78 86.36 0.50 5.48 16 12 C -0.08 -2.46 4.48 30.47 0.14 -2.33 16 13 C -0.13 -4.35 5.88 30.70 0.18 -4.17 16 14 C 0.14 5.83 6.50 86.36 0.56 6.39 16 15 N -0.61 -30.03 2.82 -699.89 -1.97 -32.01 16 16 C -0.26 -14.46 9.59 84.04 0.81 -13.66 16 17 H 0.06 3.07 7.89 -2.91 -0.02 3.04 16 18 C -0.04 -2.21 4.92 84.86 0.42 -1.79 16 19 N -0.93 -53.07 11.18 21.65 0.24 -52.82 16 20 Si 0.95 45.43 29.59 68.60 2.03 47.46 16 21 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 22 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 23 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 24 C 0.20 8.88 3.67 86.16 0.32 9.20 16 25 N -0.72 -14.31 4.22 -457.80 -1.93 -16.24 16 26 C 0.70 18.14 8.80 179.05 1.58 19.72 16 27 N -0.85 -13.98 8.88 -184.75 -1.64 -15.62 16 28 O -0.65 -23.80 16.84 -3.99 -0.07 -23.86 16 29 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.04 0.79 8.14 -2.38 -0.02 0.77 16 31 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.14 0.92 7.95 -2.39 -0.02 0.90 16 33 H 0.14 1.34 8.14 -2.39 -0.02 1.33 16 34 H 0.12 1.18 7.31 -2.39 -0.02 1.16 16 35 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.10 1.70 7.70 -2.38 -0.02 1.69 16 37 H 0.08 1.91 7.70 -2.39 -0.02 1.90 16 38 H 0.03 1.50 7.73 -2.39 -0.02 1.49 16 39 H 0.05 2.28 5.62 -2.39 -0.01 2.27 16 40 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 42 H 0.04 1.56 6.19 -2.39 -0.01 1.55 16 43 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 44 H 0.04 1.83 7.93 -2.39 -0.02 1.81 16 45 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 46 H 0.25 13.96 8.31 -92.71 -0.77 13.19 16 47 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 48 H 0.06 2.86 5.90 -2.39 -0.01 2.85 16 49 H 0.41 5.56 8.62 -92.71 -0.80 4.76 16 50 H 0.41 3.88 8.84 -92.71 -0.82 3.06 16 51 H 0.42 6.14 8.93 -92.71 -0.83 5.32 16 Total: -1.00 -83.25 396.34 -0.72 -83.97 By element: Atomic # 1 Polarization: 21.42 SS G_CDS: -1.48 Total: 19.94 kcal Atomic # 6 Polarization: 24.05 SS G_CDS: 6.84 Total: 30.90 kcal Atomic # 7 Polarization: -128.27 SS G_CDS: -7.99 Total: -136.26 kcal Atomic # 8 Polarization: -45.88 SS G_CDS: -0.11 Total: -46.00 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Total: -83.25 -0.72 -83.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569465933.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.366 kcal (2) G-P(sol) polarization free energy of solvation -83.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds