Wall clock time and date at job start Tue Mar 31 2020 22:05:22
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 H 1.09000 * 109.47191 * 2 1
4 4 N 1.46506 * 109.47349 * 239.99780 * 2 1 3
5 5 C 1.34774 * 119.99908 * 84.99868 * 4 2 1
6 6 O 1.21280 * 120.00077 * 0.02562 * 5 4 2
7 7 C 1.50696 * 119.99709 * 179.97438 * 5 4 2
8 8 H 1.09001 * 109.91224 * 319.30166 * 7 5 4
9 9 C 1.53997 * 109.91413 * 80.40722 * 7 5 4
10 10 C 1.54591 * 105.14033 * 120.57752 * 9 7 5
11 11 C 1.54936 * 102.92566 * 21.95419 * 10 9 7
12 12 N 1.47899 * 109.91634 * 198.19580 * 7 5 4
13 13 C 1.46898 * 111.00121 * 94.80899 * 12 7 5
14 14 C 1.53003 * 109.47025 * 119.99849 * 2 1 3
15 15 C 1.53938 * 113.73402 * 281.72875 * 14 2 1
16 16 N 1.47953 * 86.18057 * 221.92235 * 15 14 2
17 17 C 1.46902 * 110.99712 * 137.58310 * 16 15 14
18 18 C 1.50703 * 109.47144 * 70.64136 * 17 16 15
19 19 O 1.21289 * 119.99913 * 359.97438 * 18 17 16
20 20 N 1.34775 * 119.99850 * 179.97438 * 18 17 16
21 21 C 1.37101 * 119.99837 * 179.97438 * 20 18 17
22 22 H 1.07995 * 119.99962 * 0.02562 * 21 20 18
23 23 C 1.38947 * 119.99857 * 180.02562 * 21 20 18
24 24 N 1.31411 * 120.00154 * 0.02562 * 23 21 20
25 25 Si 1.86800 * 119.99886 * 180.02562 * 23 21 20
26 26 H 1.48496 * 109.47208 * 90.00002 * 25 23 21
27 27 H 1.48501 * 109.47087 * 209.99994 * 25 23 21
28 28 H 1.48501 * 109.47139 * 329.99820 * 25 23 21
29 29 C 1.47958 * 90.76841 * 24.68949 * 16 15 14
30 30 H 1.09004 * 109.46864 * 180.02562 * 1 2 3
31 31 H 1.08995 * 109.47184 * 300.03500 * 1 2 3
32 32 H 1.09002 * 109.47227 * 60.04083 * 1 2 3
33 33 H 0.97000 * 119.99276 * 264.99980 * 4 2 1
34 34 H 1.09007 * 110.30557 * 239.49214 * 9 7 5
35 35 H 1.08994 * 110.31131 * 1.65283 * 9 7 5
36 36 H 1.09001 * 110.72599 * 140.31740 * 10 9 7
37 37 H 1.09009 * 110.72303 * 263.59413 * 10 9 7
38 38 H 1.09001 * 110.66885 * 81.02124 * 11 10 9
39 39 H 1.09001 * 110.66991 * 203.98685 * 11 10 9
40 40 H 1.08995 * 109.47168 * 59.99526 * 13 12 7
41 41 H 1.09001 * 109.47785 * 180.02562 * 13 12 7
42 42 H 1.09007 * 109.46959 * 300.00091 * 13 12 7
43 43 H 1.08994 * 112.94323 * 53.43677 * 14 2 1
44 44 H 1.09003 * 113.75788 * 336.23997 * 15 14 2
45 45 H 1.09000 * 113.75716 * 107.60358 * 15 14 2
46 46 H 1.09003 * 109.47228 * 190.63813 * 17 16 15
47 47 H 1.09000 * 109.47460 * 310.63649 * 17 16 15
48 48 H 0.96998 * 120.00324 * 0.02562 * 20 18 17
49 49 H 0.97003 * 119.99717 * 180.02562 * 24 23 21
50 50 H 1.08990 * 113.76227 * 220.99110 * 29 16 15
51 51 H 1.09004 * 113.75880 * 89.62461 * 29 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 7 2.0184 -0.6907 -1.1962
5 6 2.1471 -0.0184 -2.3571
6 8 1.8590 1.1585 -2.4115
7 6 2.6500 -0.7287 -3.5874
8 1 3.4655 -1.4010 -3.3206
9 6 1.5043 -1.5260 -4.2379
10 6 1.3725 -0.9506 -5.6667
11 6 2.7620 -0.3106 -5.9121
12 7 3.1171 0.2592 -4.5840
13 6 4.5653 0.4776 -4.4701
14 6 2.0399 -0.7212 1.2493
15 6 1.9764 0.1339 2.5277
16 7 3.3108 -0.4202 2.8460
17 6 4.2038 0.6238 3.3663
18 6 3.7541 1.0272 4.7470
19 8 2.7848 0.4976 5.2479
20 7 4.4290 1.9766 5.4249
21 6 4.0195 2.3440 6.6807
22 1 3.1565 1.8724 7.1268
23 6 4.7150 3.3231 7.3795
24 7 5.7649 3.8973 6.8365
25 14 4.1576 3.8232 9.0908
26 1 4.8359 2.9718 10.1009
27 1 4.5066 5.2468 9.3288
28 1 2.6872 3.6485 9.2032
29 6 3.5700 -0.6729 1.4114
30 1 -0.3633 -1.0277 0.0005
31 1 -0.3633 0.5144 0.8896
32 1 -0.3634 0.5132 -0.8904
33 1 2.2491 -1.6318 -1.1525
34 1 1.7564 -2.5857 -4.2785
35 1 0.5778 -1.3778 -3.6834
36 1 1.1818 -1.7463 -6.3869
37 1 0.5874 -0.1956 -5.7076
38 1 3.4874 -1.0679 -6.2092
39 1 2.6964 0.4742 -6.6658
40 1 5.0889 -0.4633 -4.6387
41 1 4.8822 1.2086 -5.2140
42 1 4.7992 0.8499 -3.4727
43 1 1.6178 -1.7193 1.3657
44 1 1.9803 1.2074 2.3387
45 1 1.1958 -0.1738 3.2235
46 1 5.2228 0.2398 3.4139
47 1 4.1728 1.4907 2.7063
48 1 5.2040 2.4005 5.0241
49 1 6.2506 4.5806 7.3245
50 1 4.0627 -1.6251 1.2153
51 1 4.0400 0.1646 0.8958
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001570850589.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:05:22
Heat of formation + Delta-G solvation = -56.214580 kcal
Electronic energy + Delta-G solvation = -29634.411852 eV
Core-core repulsion = 25568.616176 eV
Total energy + Delta-G solvation = -4065.795676 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.211 amu
Computer time = 1.14 seconds
Orbital eigenvalues (eV)
-41.67965 -40.94727 -39.66958 -38.81555 -36.30574 -35.88662 -33.37111 -33.21263
-32.61486 -30.93821 -29.84056 -27.44928 -27.03112 -26.61435 -25.69527 -23.87672
-22.31558 -22.05719 -21.26564 -20.99335 -20.44120 -19.90905 -18.32075 -17.90659
-17.50753 -16.86544 -16.75368 -16.65593 -16.37810 -16.04346 -15.64710 -15.55399
-15.29224 -15.03656 -14.90960 -14.60238 -14.39733 -14.21930 -13.93680 -13.66356
-13.52859 -13.48505 -13.32712 -13.11168 -12.94494 -12.87552 -12.60383 -12.50141
-12.44801 -12.28518 -12.14773 -11.99770 -11.92900 -11.81990 -11.68358 -11.59477
-11.50399 -10.70558 -10.36283 -10.10472 -10.04136 -9.68234 -9.36683 -8.48876
-5.97989 1.36213 1.39710 1.52856 1.70828 2.01484 2.05114 2.26933
2.79596 3.07872 3.17265 3.26472 3.42731 3.60677 3.64881 3.70637
3.94355 4.05576 4.14902 4.16445 4.22411 4.27994 4.34619 4.41009
4.42797 4.46734 4.48016 4.50694 4.52123 4.60074 4.74911 4.76137
4.78571 4.85970 4.87140 4.96897 4.99125 5.00888 5.12422 5.18884
5.25617 5.31337 5.37569 5.40854 5.55582 5.81985 5.87602 6.01556
6.05198 6.56995 6.68593 7.09767 7.39245 7.52535 8.07927 8.68623
Molecular weight = 338.21amu
Principal moments of inertia in cm(-1)
A = 0.022494 B = 0.001950 C = 0.001878
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1244.504005 B =14353.560869 C =14905.881214
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.156 4.156
2 C 0.160 3.840
3 H 0.058 0.942
4 N -0.710 5.710
5 C 0.517 3.483
6 O -0.569 6.569
7 C 0.050 3.950
8 H 0.098 0.902
9 C -0.115 4.115
10 C -0.122 4.122
11 C 0.036 3.964
12 N -0.534 5.534
13 C 0.020 3.980
14 C -0.098 4.098
15 C 0.023 3.977
16 N -0.477 5.477
17 C 0.023 3.977
18 C 0.440 3.560
19 O -0.616 6.616
20 N -0.575 5.575
21 C -0.333 4.333
22 H 0.079 0.921
23 C -0.015 4.015
24 N -0.921 5.921
25 Si 0.995 3.005
26 H -0.270 1.270
27 H -0.270 1.270
28 H -0.273 1.273
29 C 0.014 3.986
30 H 0.078 0.922
31 H 0.062 0.938
32 H 0.044 0.956
33 H 0.415 0.585
34 H 0.108 0.892
35 H 0.067 0.933
36 H 0.100 0.900
37 H 0.059 0.941
38 H 0.065 0.935
39 H 0.082 0.918
40 H 0.049 0.951
41 H 0.075 0.925
42 H 0.051 0.949
43 H 0.125 0.875
44 H 0.054 0.946
45 H 0.074 0.926
46 H 0.109 0.891
47 H 0.068 0.932
48 H 0.395 0.605
49 H 0.278 0.722
50 H 0.113 0.887
51 H 0.069 0.931
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.817 -14.202 -27.774 31.427
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.214 4.214
2 C 0.055 3.945
3 H 0.076 0.924
4 N -0.363 5.363
5 C 0.303 3.697
6 O -0.447 6.447
7 C -0.063 4.063
8 H 0.115 0.885
9 C -0.154 4.154
10 C -0.160 4.160
11 C -0.091 4.091
12 N -0.259 5.259
13 C -0.129 4.129
14 C -0.118 4.118
15 C -0.106 4.106
16 N -0.200 5.200
17 C -0.109 4.109
18 C 0.228 3.772
19 O -0.502 6.502
20 N -0.212 5.212
21 C -0.463 4.463
22 H 0.097 0.903
23 C -0.215 4.215
24 N -0.562 5.562
25 Si 0.818 3.182
26 H -0.195 1.195
27 H -0.195 1.195
28 H -0.198 1.198
29 C -0.114 4.114
30 H 0.097 0.903
31 H 0.081 0.919
32 H 0.063 0.937
33 H 0.252 0.748
34 H 0.127 0.873
35 H 0.086 0.914
36 H 0.119 0.881
37 H 0.078 0.922
38 H 0.084 0.916
39 H 0.101 0.899
40 H 0.067 0.933
41 H 0.093 0.907
42 H 0.070 0.930
43 H 0.143 0.857
44 H 0.073 0.927
45 H 0.093 0.907
46 H 0.127 0.873
47 H 0.086 0.914
48 H 0.229 0.771
49 H 0.087 0.913
50 H 0.132 0.868
51 H 0.087 0.913
Dipole moment (debyes) X Y Z Total
from point charges -4.673 -13.556 -26.835 30.425
hybrid contribution 0.858 0.772 0.507 1.261
sum -3.815 -12.783 -26.327 29.515
Atomic orbital electron populations
1.22076 0.94531 1.03153 1.01681 1.20757 0.94548 0.95800 0.83439
0.92409 1.45887 1.67340 1.14666 1.08443 1.21008 0.77022 0.86861
0.84791 1.90692 1.50650 1.18097 1.85245 1.22424 0.99816 0.92769
0.91246 0.88457 1.22394 0.96660 1.00253 0.96068 1.22504 0.96587
1.00496 0.96418 1.23361 0.96868 0.98476 0.90353 1.64296 1.15589
1.42617 1.03356 1.22502 0.86674 1.01362 1.02316 1.23193 0.95830
1.00859 0.91890 1.23701 0.93524 0.97359 0.96063 1.68406 1.02385
1.32661 1.16512 1.22345 0.99701 0.95814 0.93050 1.20714 0.85378
0.82179 0.88957 1.90480 1.30537 1.57641 1.71575 1.41963 1.28527
1.34996 1.15746 1.19662 1.13272 1.20214 0.93117 0.90282 1.26082
0.95694 0.95965 1.03723 1.69679 1.19190 1.27230 1.40089 0.84904
0.78443 0.77787 0.77053 1.19503 1.19511 1.19757 1.24059 0.96430
1.03291 0.87642 0.90287 0.91869 0.93675 0.74767 0.87325 0.91388
0.88113 0.92221 0.91642 0.89920 0.93281 0.90657 0.92962 0.85663
0.92726 0.90744 0.87338 0.91386 0.77114 0.91281 0.86835 0.91289
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -3.06 9.44 71.98 0.68 -2.38 16
2 C 0.16 3.24 2.29 44.99 0.10 3.34 16
3 H 0.06 1.56 7.48 -2.39 -0.02 1.54 16
4 N -0.71 -11.04 4.94 -442.53 -2.19 -13.22 16
5 C 0.52 10.76 6.83 87.66 0.60 11.36 16
6 O -0.57 -18.18 16.22 -3.03 -0.05 -18.23 16
7 C 0.05 0.69 2.87 44.31 0.13 0.82 16
8 H 0.10 0.89 7.73 -2.39 -0.02 0.87 16
9 C -0.12 -1.09 6.56 31.47 0.21 -0.88 16
10 C -0.12 -1.19 7.06 31.80 0.22 -0.97 16
11 C 0.04 0.41 6.58 86.59 0.57 0.98 16
12 N -0.53 -9.27 4.77 -887.66 -4.23 -13.50 16
13 C 0.02 0.29 9.41 127.69 1.20 1.49 16
14 C -0.10 -1.99 3.35 -10.14 -0.03 -2.03 16
15 C 0.02 0.71 6.22 86.41 0.54 1.25 16
16 N -0.48 -15.36 5.95 -912.40 -5.43 -20.79 16
17 C 0.02 0.82 5.31 85.56 0.45 1.27 16
18 C 0.44 21.72 7.59 87.66 0.67 22.38 16
19 O -0.62 -34.88 15.12 -3.06 -0.05 -34.92 16
20 N -0.57 -30.51 5.29 -306.99 -1.62 -32.14 16
21 C -0.33 -19.38 9.68 84.04 0.81 -18.56 16
22 H 0.08 4.89 7.16 -2.91 -0.02 4.86 16
23 C -0.02 -0.82 5.50 84.93 0.47 -0.35 16
24 N -0.92 -50.78 13.05 21.66 0.28 -50.49 16
25 Si 0.99 43.78 29.55 68.60 2.03 45.81 16
26 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16
27 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16
28 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16
29 C 0.01 0.30 7.41 86.41 0.64 0.94 16
30 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16
31 H 0.06 1.32 8.09 -2.39 -0.02 1.30 16
32 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16
33 H 0.42 3.56 8.60 -92.71 -0.80 2.76 16
34 H 0.11 0.39 8.14 -2.38 -0.02 0.37 16
35 H 0.07 0.79 7.68 -2.39 -0.02 0.77 16
36 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16
37 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16
38 H 0.07 0.50 7.97 -2.39 -0.02 0.48 16
39 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16
40 H 0.05 0.50 8.01 -2.39 -0.02 0.48 16
41 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16
42 H 0.05 0.93 8.14 -2.38 -0.02 0.91 16
43 H 0.13 2.08 8.14 -2.39 -0.02 2.06 16
44 H 0.05 1.80 7.67 -2.39 -0.02 1.78 16
45 H 0.07 2.60 8.09 -2.39 -0.02 2.58 16
46 H 0.11 3.51 8.14 -2.39 -0.02 3.49 16
47 H 0.07 2.26 7.69 -2.39 -0.02 2.24 16
48 H 0.40 20.00 7.90 -92.71 -0.73 19.27 16
49 H 0.28 14.31 8.31 -92.71 -0.77 13.54 16
50 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16
51 H 0.07 1.51 7.75 -2.38 -0.02 1.49 16
Total: -1.00 -78.80 411.99 -4.60 -83.40
By element:
Atomic # 1 Polarization: 36.01 SS G_CDS: -0.60 Total: 35.41 kcal
Atomic # 6 Polarization: 11.42 SS G_CDS: 7.25 Total: 18.67 kcal
Atomic # 7 Polarization: -116.96 SS G_CDS: -13.19 Total: -130.14 kcal
Atomic # 8 Polarization: -53.05 SS G_CDS: -0.10 Total: -53.15 kcal
Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal
Total: -78.80 -4.60 -83.40 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001570850589.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 27.184 kcal
(2) G-P(sol) polarization free energy of solvation -78.798 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.614 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.601 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.398 kcal
(6) G-S(sol) free energy of system = (1) + (5) -56.215 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.14 seconds