Wall clock time and date at job start Tue Mar 31 2020 22:24:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42900 * 113.99882 * 2 1 4 4 C 1.52997 * 109.46850 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47071 * 178.21476 * 4 3 2 6 6 C 1.36742 * 127.13418 * 87.38774 * 5 4 3 7 7 C 1.50701 * 126.34683 * 359.97438 * 6 5 4 8 8 C 1.53000 * 109.47150 * 269.71473 * 7 6 5 9 9 H 1.09000 * 109.46939 * 55.00174 * 8 7 6 10 10 C 1.52995 * 109.46903 * 175.00337 * 8 7 6 11 11 O 1.42902 * 109.46999 * 295.00084 * 8 7 6 12 12 N 1.30298 * 107.30448 * 179.73254 * 6 5 4 13 13 N 1.28524 * 110.05347 * 0.26401 * 12 6 5 14 14 C 1.31218 * 109.86309 * 359.97438 * 13 12 6 15 15 N 1.38580 * 126.47611 * 180.02562 * 14 13 12 16 16 C 1.46848 * 111.00115 * 273.29236 * 15 14 13 17 17 C 1.53037 * 109.52476 * 185.83823 * 16 15 14 18 18 C 1.53119 * 109.27972 * 300.82080 * 17 16 15 19 19 C 1.53118 * 109.15953 * 57.65293 * 18 17 16 20 20 H 1.08996 * 109.50648 * 62.28612 * 19 18 17 21 21 C 1.50698 * 109.50358 * 182.40837 * 19 18 17 22 22 H 1.07998 * 120.00575 * 119.80455 * 21 19 18 23 23 C 1.37885 * 119.99754 * 299.80315 * 21 19 18 24 24 N 1.31515 * 119.99906 * 359.97438 * 23 21 19 25 25 Si 1.86796 * 119.99817 * 180.02562 * 23 21 19 26 26 H 1.48505 * 109.47569 * 359.97438 * 25 23 21 27 27 H 1.48508 * 109.47314 * 119.99974 * 25 23 21 28 28 H 1.48502 * 109.47163 * 239.99907 * 25 23 21 29 29 C 1.46844 * 111.00124 * 37.50045 * 15 14 13 30 30 H 1.08994 * 109.47253 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.46906 * 299.99982 * 1 2 3 32 32 H 1.09004 * 109.46992 * 60.00021 * 1 2 3 33 33 H 1.08997 * 109.47033 * 60.00223 * 3 2 1 34 34 H 1.09000 * 109.47111 * 300.00143 * 3 2 1 35 35 H 1.08998 * 109.47613 * 58.21737 * 4 3 2 36 36 H 1.08997 * 109.47347 * 298.21577 * 4 3 2 37 37 H 1.09001 * 109.46865 * 149.71649 * 7 6 5 38 38 H 1.08996 * 109.46858 * 29.71977 * 7 6 5 39 39 H 1.09008 * 109.46894 * 180.02562 * 10 8 7 40 40 H 1.08998 * 109.46980 * 299.99501 * 10 8 7 41 41 H 1.08990 * 109.47554 * 60.00010 * 10 8 7 42 42 H 0.96698 * 113.99901 * 300.00162 * 11 8 7 43 43 H 1.09003 * 109.46461 * 305.85336 * 16 15 14 44 44 H 1.08999 * 109.46307 * 65.82224 * 16 15 14 45 45 H 1.08997 * 109.50435 * 180.87920 * 17 16 15 46 46 H 1.09001 * 109.53774 * 60.78217 * 17 16 15 47 47 H 1.08998 * 109.52167 * 297.75185 * 18 17 16 48 48 H 1.08997 * 109.52485 * 177.56160 * 18 17 16 49 49 H 0.96998 * 119.99711 * 179.97438 * 24 23 21 50 50 H 1.09004 * 109.46450 * 294.17847 * 29 15 14 51 51 H 1.09007 * 109.46318 * 54.15359 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 4.1312 2.5223 -0.0437 6 6 4.4247 3.3299 1.0201 7 6 4.1939 3.0102 2.4746 8 6 2.8022 3.4927 2.8882 9 1 2.0549 3.0586 2.2240 10 6 2.5189 3.0585 4.3276 11 8 2.7467 4.9180 2.8010 12 7 4.9456 4.4249 0.5433 13 7 4.9958 4.3668 -0.7397 14 6 4.5060 3.2220 -1.1536 15 7 4.3954 2.8007 -2.4692 16 6 3.1388 3.2687 -3.0678 17 6 2.9828 2.6664 -4.4660 18 6 4.1716 3.0885 -5.3338 19 6 5.4703 2.6313 -4.6638 20 1 5.4803 1.5437 -4.5936 21 6 6.6484 3.0943 -5.4816 22 1 7.3839 3.7532 -5.0442 23 6 6.7873 2.6768 -6.7884 24 7 5.8919 1.8740 -7.3208 25 14 8.2479 3.2501 -7.8018 26 1 9.1039 4.1403 -6.9770 27 1 9.0377 2.0722 -8.2424 28 1 7.7631 3.9942 -8.9920 29 6 5.5542 3.2347 -3.2599 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.6886 1.8463 0.8900 34 1 1.6886 1.8464 -0.8900 35 1 3.8546 0.6165 -0.8744 36 1 3.8596 0.6714 0.9046 37 1 4.9477 3.5124 3.0810 38 1 4.2649 1.9330 2.6255 39 1 1.5271 3.4018 4.6222 40 1 2.5611 1.9713 4.3942 41 1 3.2661 3.4924 4.9919 42 1 3.3860 5.3718 3.3670 43 1 2.3012 2.9584 -2.4432 44 1 3.1540 4.3562 -3.1405 45 1 2.0577 3.0263 -4.9162 46 1 2.9532 1.5792 -4.3933 47 1 4.1785 4.1733 -5.4394 48 1 4.0869 2.6265 -6.3174 49 1 5.9894 1.5806 -8.2402 50 1 5.5581 4.3223 -3.3317 51 1 6.4710 2.8994 -2.7749 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001646814953.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:11 Heat of formation + Delta-G solvation = -18.171549 kcal Electronic energy + Delta-G solvation = -31196.079852 eV Core-core repulsion = 27131.933845 eV Total energy + Delta-G solvation = -4064.146007 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.84190 -38.45308 -38.36131 -37.90240 -35.20575 -33.95975 -32.67224 -31.75616 -30.18544 -30.00789 -29.56167 -26.85719 -26.60067 -25.03948 -23.96853 -23.58854 -22.43922 -21.61082 -21.00572 -20.34571 -18.62169 -17.63747 -16.93743 -16.81720 -16.38940 -16.14056 -16.05556 -15.83754 -15.49334 -14.98093 -14.59958 -14.57676 -14.33458 -13.95943 -13.75477 -13.46074 -12.92041 -12.82871 -12.61537 -12.59087 -12.55910 -12.40006 -12.23549 -11.89017 -11.80521 -11.69324 -11.29314 -11.24073 -10.96579 -10.80809 -10.70593 -10.51824 -10.33820 -10.23564 -10.07032 -10.00573 -9.91224 -9.56597 -9.23805 -9.03439 -8.70036 -8.34782 -8.03487 -5.99997 -4.05445 1.82439 2.21716 3.04692 3.31073 3.39160 3.42579 3.45441 3.97957 4.11842 4.22797 4.35917 4.44934 4.47305 4.59630 4.61439 4.77992 4.85194 4.96245 5.00996 5.04184 5.12761 5.24876 5.29073 5.30515 5.35189 5.38773 5.41658 5.54942 5.59061 5.67528 5.75558 5.84466 5.92480 6.03070 6.22454 6.38076 6.40060 6.54486 6.65159 6.68989 6.77771 6.87683 7.05433 7.29133 7.39130 7.41278 7.71072 7.74870 8.00135 8.10775 8.42726 8.97256 8.98804 9.59177 11.06415 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.014971 B = 0.003101 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.795380 B = 9028.100699 C =10250.799668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.384 6.384 3 C 0.048 3.952 4 C 0.114 3.886 5 N -0.470 5.470 6 C 0.169 3.831 7 C -0.062 4.062 8 C 0.107 3.893 9 H 0.093 0.907 10 C -0.185 4.185 11 O -0.552 6.552 12 N -0.274 5.274 13 N -0.314 5.314 14 C 0.371 3.629 15 N -0.466 5.466 16 C 0.073 3.927 17 C -0.116 4.116 18 C -0.113 4.113 19 C 0.056 3.944 20 H 0.035 0.965 21 C -0.512 4.512 22 H 0.057 0.943 23 C 0.064 3.936 24 N -0.889 5.889 25 Si 0.892 3.108 26 H -0.273 1.273 27 H -0.284 1.284 28 H -0.284 1.284 29 C 0.083 3.917 30 H 0.090 0.910 31 H 0.041 0.959 32 H 0.045 0.955 33 H 0.053 0.947 34 H 0.060 0.940 35 H 0.116 0.884 36 H 0.098 0.902 37 H 0.102 0.898 38 H 0.090 0.910 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.063 0.937 42 H 0.377 0.623 43 H 0.054 0.946 44 H 0.042 0.958 45 H 0.055 0.945 46 H 0.063 0.937 47 H 0.035 0.965 48 H 0.095 0.905 49 H 0.259 0.741 50 H 0.045 0.955 51 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.624 -3.354 21.173 24.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.302 6.302 3 C -0.029 4.029 4 C -0.010 4.010 5 N -0.166 5.166 6 C -0.098 4.098 7 C -0.102 4.102 8 C 0.046 3.954 9 H 0.111 0.889 10 C -0.242 4.242 11 O -0.357 6.357 12 N -0.114 5.114 13 N -0.157 5.157 14 C 0.015 3.985 15 N -0.192 5.192 16 C -0.053 4.053 17 C -0.154 4.154 18 C -0.151 4.151 19 C 0.037 3.963 20 H 0.053 0.947 21 C -0.551 4.551 22 H 0.075 0.925 23 C -0.138 4.138 24 N -0.528 5.528 25 Si 0.720 3.280 26 H -0.197 1.197 27 H -0.211 1.211 28 H -0.211 1.211 29 C -0.043 4.043 30 H 0.109 0.891 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.135 0.865 36 H 0.117 0.883 37 H 0.121 0.879 38 H 0.108 0.892 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.082 0.918 42 H 0.225 0.775 43 H 0.073 0.927 44 H 0.061 0.939 45 H 0.073 0.927 46 H 0.082 0.918 47 H 0.054 0.946 48 H 0.113 0.887 49 H 0.069 0.931 50 H 0.063 0.937 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -11.406 -2.894 20.504 23.641 hybrid contribution 0.413 -0.044 -0.205 0.464 sum -10.992 -2.938 20.299 23.270 Atomic orbital electron populations 1.22789 0.80140 1.03134 1.00292 1.87817 1.20363 1.26492 1.95505 1.22840 0.93121 0.85645 1.01328 1.21509 0.91898 0.81148 1.06463 1.46137 1.48251 1.15723 1.06464 1.24333 1.04025 0.89927 0.91528 1.20791 0.99645 1.02896 0.86863 1.21901 0.94987 0.82276 0.96214 0.88933 1.22509 1.02950 1.02340 0.96443 1.86650 1.62280 1.17125 1.69661 1.73967 1.16671 1.18059 1.02680 1.74740 1.21869 1.15276 1.03821 1.22824 0.99043 0.87826 0.88789 1.58927 1.06392 1.58562 0.95274 1.22152 0.88361 0.98195 0.96626 1.21713 0.99835 1.00740 0.93091 1.21704 0.93217 0.99124 1.01075 1.18720 0.93680 0.96597 0.87270 0.94653 1.21131 1.07823 1.29387 0.96786 0.92493 1.24916 0.96239 0.94888 0.97718 1.69891 1.34586 1.34052 1.14248 0.86540 0.82804 0.78525 0.80175 1.19725 1.21066 1.21053 1.22415 0.87917 0.98820 0.95130 0.89119 0.94004 0.93622 0.92913 0.92172 0.86548 0.88330 0.87922 0.89155 0.91416 0.91363 0.91773 0.77490 0.92734 0.93923 0.92684 0.91796 0.94576 0.88666 0.93073 0.93701 0.91884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.36 16 2 O -0.38 -3.97 10.70 -35.23 -0.38 -4.35 16 3 C 0.05 0.50 6.26 37.16 0.23 0.73 16 4 C 0.11 1.29 6.37 -4.04 -0.03 1.26 16 5 N -0.47 -6.83 2.81 -114.09 -0.32 -7.15 16 6 C 0.17 2.37 7.09 -154.01 -1.09 1.27 16 7 C -0.06 -0.53 5.27 -27.88 -0.15 -0.68 16 8 C 0.11 0.86 3.57 -26.73 -0.10 0.76 16 9 H 0.09 0.82 6.03 -51.93 -0.31 0.51 16 10 C -0.18 -0.97 9.53 37.15 0.35 -0.61 16 11 O -0.55 -5.71 13.09 -35.23 -0.46 -6.17 16 12 N -0.27 -4.93 12.18 32.99 0.40 -4.53 16 13 N -0.31 -6.37 11.72 30.31 0.36 -6.02 16 14 C 0.37 6.81 6.69 -318.87 -2.13 4.68 16 15 N -0.47 -8.91 4.67 -174.55 -0.82 -9.72 16 16 C 0.07 1.31 5.40 -3.83 -0.02 1.29 16 17 C -0.12 -2.15 6.09 -26.65 -0.16 -2.31 16 18 C -0.11 -2.60 5.03 -26.61 -0.13 -2.73 16 19 C 0.06 1.39 2.26 -91.69 -0.21 1.18 16 20 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 21 C -0.51 -14.00 8.56 -34.44 -0.29 -14.29 16 22 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 23 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 24 N -0.89 -24.91 11.36 55.43 0.63 -24.28 16 25 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 26 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 27 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 28 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 29 C 0.08 1.83 4.33 -3.84 -0.02 1.82 16 30 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.04 0.26 8.14 -51.93 -0.42 -0.17 16 32 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.05 0.48 6.03 -51.93 -0.31 0.17 16 34 H 0.06 0.71 6.66 -51.93 -0.35 0.36 16 35 H 0.12 1.48 8.14 -51.93 -0.42 1.06 16 36 H 0.10 0.86 7.33 -51.93 -0.38 0.48 16 37 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.09 0.58 7.32 -51.93 -0.38 0.20 16 39 H 0.07 0.37 8.14 -51.92 -0.42 -0.05 16 40 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 41 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 42 H 0.38 2.63 9.05 45.56 0.41 3.04 16 43 H 0.05 0.85 6.62 -51.93 -0.34 0.51 16 44 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 46 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 47 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 48 H 0.10 2.43 6.17 -51.93 -0.32 2.11 16 49 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 50 H 0.04 1.05 8.06 -51.93 -0.42 0.63 16 51 H 0.06 1.44 8.10 -51.93 -0.42 1.02 16 LS Contribution 403.41 15.07 6.08 6.08 Total: -1.00 -32.84 403.41 -10.11 -42.96 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -7.86 Total: 1.53 kcal Atomic # 6 Polarization: -1.91 SS G_CDS: -2.73 Total: -4.63 kcal Atomic # 7 Polarization: -51.94 SS G_CDS: 0.25 Total: -51.69 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: -0.84 Total: -10.52 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -32.84 -10.11 -42.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646814953.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.784 kcal (2) G-P(sol) polarization free energy of solvation -32.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds