Wall clock time and date at job start Tue Mar 31 2020 22:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42900 * 113.99882 * 2 1 4 4 C 1.52997 * 109.46850 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47071 * 178.21476 * 4 3 2 6 6 C 1.36742 * 127.13418 * 87.38774 * 5 4 3 7 7 C 1.50701 * 126.34683 * 359.97438 * 6 5 4 8 8 C 1.53000 * 109.47150 * 269.71473 * 7 6 5 9 9 H 1.09000 * 109.46939 * 55.00174 * 8 7 6 10 10 C 1.52995 * 109.46903 * 175.00337 * 8 7 6 11 11 O 1.42902 * 109.46999 * 295.00084 * 8 7 6 12 12 N 1.30298 * 107.30448 * 179.73254 * 6 5 4 13 13 N 1.28524 * 110.05347 * 0.26401 * 12 6 5 14 14 C 1.31218 * 109.86309 * 359.97438 * 13 12 6 15 15 N 1.38580 * 126.47611 * 180.02562 * 14 13 12 16 16 C 1.46848 * 111.00115 * 273.29236 * 15 14 13 17 17 C 1.53037 * 109.52476 * 185.83823 * 16 15 14 18 18 C 1.53119 * 109.27972 * 300.82080 * 17 16 15 19 19 C 1.53118 * 109.15953 * 57.65293 * 18 17 16 20 20 H 1.08996 * 109.50648 * 62.28612 * 19 18 17 21 21 C 1.50698 * 109.50358 * 182.40837 * 19 18 17 22 22 H 1.07998 * 120.00575 * 119.80455 * 21 19 18 23 23 C 1.37885 * 119.99754 * 299.80315 * 21 19 18 24 24 N 1.31515 * 119.99906 * 359.97438 * 23 21 19 25 25 Si 1.86796 * 119.99817 * 180.02562 * 23 21 19 26 26 H 1.48505 * 109.47569 * 359.97438 * 25 23 21 27 27 H 1.48508 * 109.47314 * 119.99974 * 25 23 21 28 28 H 1.48502 * 109.47163 * 239.99907 * 25 23 21 29 29 C 1.46844 * 111.00124 * 37.50045 * 15 14 13 30 30 H 1.08994 * 109.47253 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.46906 * 299.99982 * 1 2 3 32 32 H 1.09004 * 109.46992 * 60.00021 * 1 2 3 33 33 H 1.08997 * 109.47033 * 60.00223 * 3 2 1 34 34 H 1.09000 * 109.47111 * 300.00143 * 3 2 1 35 35 H 1.08998 * 109.47613 * 58.21737 * 4 3 2 36 36 H 1.08997 * 109.47347 * 298.21577 * 4 3 2 37 37 H 1.09001 * 109.46865 * 149.71649 * 7 6 5 38 38 H 1.08996 * 109.46858 * 29.71977 * 7 6 5 39 39 H 1.09008 * 109.46894 * 180.02562 * 10 8 7 40 40 H 1.08998 * 109.46980 * 299.99501 * 10 8 7 41 41 H 1.08990 * 109.47554 * 60.00010 * 10 8 7 42 42 H 0.96698 * 113.99901 * 300.00162 * 11 8 7 43 43 H 1.09003 * 109.46461 * 305.85336 * 16 15 14 44 44 H 1.08999 * 109.46307 * 65.82224 * 16 15 14 45 45 H 1.08997 * 109.50435 * 180.87920 * 17 16 15 46 46 H 1.09001 * 109.53774 * 60.78217 * 17 16 15 47 47 H 1.08998 * 109.52167 * 297.75185 * 18 17 16 48 48 H 1.08997 * 109.52485 * 177.56160 * 18 17 16 49 49 H 0.96998 * 119.99711 * 179.97438 * 24 23 21 50 50 H 1.09004 * 109.46450 * 294.17847 * 29 15 14 51 51 H 1.09007 * 109.46318 * 54.15359 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 4.1312 2.5223 -0.0437 6 6 4.4247 3.3299 1.0201 7 6 4.1939 3.0102 2.4746 8 6 2.8022 3.4927 2.8882 9 1 2.0549 3.0586 2.2240 10 6 2.5189 3.0585 4.3276 11 8 2.7467 4.9180 2.8010 12 7 4.9456 4.4249 0.5433 13 7 4.9958 4.3668 -0.7397 14 6 4.5060 3.2220 -1.1536 15 7 4.3954 2.8007 -2.4692 16 6 3.1388 3.2687 -3.0678 17 6 2.9828 2.6664 -4.4660 18 6 4.1716 3.0885 -5.3338 19 6 5.4703 2.6313 -4.6638 20 1 5.4803 1.5437 -4.5936 21 6 6.6484 3.0943 -5.4816 22 1 7.3839 3.7532 -5.0442 23 6 6.7873 2.6768 -6.7884 24 7 5.8919 1.8740 -7.3208 25 14 8.2479 3.2501 -7.8018 26 1 9.1039 4.1403 -6.9770 27 1 9.0377 2.0722 -8.2424 28 1 7.7631 3.9942 -8.9920 29 6 5.5542 3.2347 -3.2599 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.6886 1.8463 0.8900 34 1 1.6886 1.8464 -0.8900 35 1 3.8546 0.6165 -0.8744 36 1 3.8596 0.6714 0.9046 37 1 4.9477 3.5124 3.0810 38 1 4.2649 1.9330 2.6255 39 1 1.5271 3.4018 4.6222 40 1 2.5611 1.9713 4.3942 41 1 3.2661 3.4924 4.9919 42 1 3.3860 5.3718 3.3670 43 1 2.3012 2.9584 -2.4432 44 1 3.1540 4.3562 -3.1405 45 1 2.0577 3.0263 -4.9162 46 1 2.9532 1.5792 -4.3933 47 1 4.1785 4.1733 -5.4394 48 1 4.0869 2.6265 -6.3174 49 1 5.9894 1.5806 -8.2402 50 1 5.5581 4.3223 -3.3317 51 1 6.4710 2.8994 -2.7749 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646814953.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:10 Heat of formation + Delta-G solvation = -40.030929 kcal Electronic energy + Delta-G solvation = -31197.027746 eV Core-core repulsion = 27131.933845 eV Total energy + Delta-G solvation = -4065.093900 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -44.10394 -40.00159 -39.13858 -38.65865 -36.31832 -35.73792 -33.96233 -33.04012 -31.86193 -31.07480 -30.58663 -27.81503 -27.27546 -27.04201 -25.46707 -24.61681 -23.44456 -23.03892 -22.32665 -21.46730 -20.37767 -18.94738 -18.24747 -17.80497 -17.49013 -17.13693 -17.07899 -16.83362 -16.57737 -16.38141 -15.92959 -15.59302 -15.55934 -15.26167 -14.85551 -14.54807 -14.53373 -14.35740 -14.20968 -13.58247 -13.43657 -13.31625 -13.12270 -12.89029 -12.81244 -12.74504 -12.63350 -12.60317 -12.48885 -12.32854 -11.96436 -11.87595 -11.82012 -11.67085 -11.41043 -11.30295 -11.14296 -11.10563 -10.80378 -10.73973 -10.42309 -10.26524 -9.54814 -8.11029 -6.23946 0.61890 1.07507 1.39798 1.42215 1.53686 1.75184 2.38798 2.51713 2.91661 3.16725 3.27276 3.44827 3.55664 3.72795 3.78628 3.83233 3.92209 3.99955 4.09527 4.12882 4.23534 4.31649 4.38272 4.39765 4.42756 4.47803 4.52500 4.55308 4.60286 4.74340 4.75964 4.77008 4.85385 4.86526 4.92327 4.93765 4.99653 5.06041 5.18257 5.25115 5.33578 5.41681 5.60354 5.62526 5.70213 5.97088 6.00553 6.09973 6.26161 6.36427 6.84719 6.88251 7.43508 7.68394 8.94197 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.014971 B = 0.003101 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.795380 B = 9028.100699 C =10250.799668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.397 6.397 3 C 0.057 3.943 4 C 0.109 3.891 5 N -0.463 5.463 6 C 0.195 3.805 7 C -0.062 4.062 8 C 0.109 3.891 9 H 0.084 0.916 10 C -0.175 4.175 11 O -0.580 6.580 12 N -0.315 5.315 13 N -0.354 5.354 14 C 0.350 3.650 15 N -0.461 5.461 16 C 0.078 3.922 17 C -0.104 4.104 18 C -0.106 4.106 19 C 0.059 3.941 20 H 0.008 0.992 21 C -0.538 4.538 22 H 0.046 0.954 23 C 0.021 3.979 24 N -0.910 5.910 25 Si 0.952 3.048 26 H -0.273 1.273 27 H -0.278 1.278 28 H -0.278 1.278 29 C 0.104 3.896 30 H 0.105 0.895 31 H 0.057 0.943 32 H 0.043 0.957 33 H 0.070 0.930 34 H 0.043 0.957 35 H 0.100 0.900 36 H 0.133 0.867 37 H 0.118 0.882 38 H 0.123 0.877 39 H 0.064 0.936 40 H 0.085 0.915 41 H 0.076 0.924 42 H 0.389 0.611 43 H 0.083 0.917 44 H 0.030 0.970 45 H 0.083 0.917 46 H 0.064 0.936 47 H 0.024 0.976 48 H 0.069 0.931 49 H 0.262 0.738 50 H 0.026 0.974 51 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.816 -4.430 23.553 27.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.316 6.316 3 C -0.021 4.021 4 C -0.013 4.013 5 N -0.158 5.158 6 C -0.073 4.073 7 C -0.102 4.102 8 C 0.049 3.951 9 H 0.102 0.898 10 C -0.233 4.233 11 O -0.388 6.388 12 N -0.153 5.153 13 N -0.197 5.197 14 C -0.007 4.007 15 N -0.186 5.186 16 C -0.048 4.048 17 C -0.142 4.142 18 C -0.144 4.144 19 C 0.040 3.960 20 H 0.026 0.974 21 C -0.576 4.576 22 H 0.064 0.936 23 C -0.178 4.178 24 N -0.549 5.549 25 Si 0.778 3.222 26 H -0.197 1.197 27 H -0.203 1.203 28 H -0.203 1.203 29 C -0.023 4.023 30 H 0.123 0.877 31 H 0.076 0.924 32 H 0.061 0.939 33 H 0.088 0.912 34 H 0.061 0.939 35 H 0.118 0.882 36 H 0.151 0.849 37 H 0.136 0.864 38 H 0.141 0.859 39 H 0.083 0.917 40 H 0.104 0.896 41 H 0.095 0.905 42 H 0.239 0.761 43 H 0.102 0.898 44 H 0.049 0.951 45 H 0.101 0.899 46 H 0.083 0.917 47 H 0.043 0.957 48 H 0.088 0.912 49 H 0.072 0.928 50 H 0.044 0.956 51 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -12.614 -3.982 22.908 26.453 hybrid contribution 0.742 0.252 -0.842 1.150 sum -11.872 -3.730 22.066 25.333 Atomic orbital electron populations 1.22997 0.78657 1.04388 1.00980 1.87796 1.21969 1.26216 1.95597 1.22688 0.92196 0.85876 1.01310 1.21761 0.92731 0.79369 1.07476 1.46254 1.47698 1.16517 1.05294 1.25373 1.00409 0.88232 0.93314 1.21169 1.00674 1.05220 0.83103 1.21954 0.94006 0.81223 0.97965 0.89803 1.22420 1.03152 1.03449 0.94263 1.86613 1.63073 1.18646 1.70502 1.73887 1.19279 1.20368 1.01815 1.74616 1.22959 1.16777 1.05391 1.22648 1.00692 0.88423 0.88939 1.58828 1.05618 1.58379 0.95774 1.22151 0.88744 0.97379 0.96565 1.21591 0.98930 1.00808 0.92860 1.21502 0.94410 0.97980 1.00512 1.18589 0.93965 0.94799 0.88606 0.97361 1.21423 1.08773 1.29714 0.97735 0.93591 1.25616 0.98696 0.94940 0.98596 1.69999 1.35781 1.34520 1.14585 0.85593 0.79762 0.78196 0.78625 1.19746 1.20338 1.20341 1.21937 0.88924 0.97149 0.94276 0.87672 0.92397 0.93860 0.91212 0.93920 0.88157 0.84871 0.86355 0.85912 0.91696 0.89647 0.90544 0.76114 0.89830 0.95141 0.89861 0.91708 0.95723 0.91244 0.92825 0.95578 0.93396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 113.37 1.25 1.57 16 2 O -0.40 -7.21 10.70 -148.98 -1.59 -8.81 16 3 C 0.06 1.05 6.26 71.98 0.45 1.50 16 4 C 0.11 2.24 6.37 86.38 0.55 2.79 16 5 N -0.46 -12.88 2.81 -514.86 -1.45 -14.33 16 6 C 0.19 5.14 7.09 137.64 0.98 6.12 16 7 C -0.06 -0.86 5.27 29.85 0.16 -0.70 16 8 C 0.11 1.41 3.57 30.59 0.11 1.52 16 9 H 0.08 1.23 6.03 -2.39 -0.01 1.22 16 10 C -0.18 -1.15 9.53 71.98 0.69 -0.46 16 11 O -0.58 -10.97 13.09 -148.98 -1.95 -12.92 16 12 N -0.31 -11.30 12.18 -49.53 -0.60 -11.90 16 13 N -0.35 -14.74 11.72 -58.00 -0.68 -15.42 16 14 C 0.35 12.99 6.69 260.11 1.74 14.74 16 15 N -0.46 -18.01 4.67 -706.14 -3.30 -21.31 16 16 C 0.08 2.77 5.40 86.33 0.47 3.24 16 17 C -0.10 -3.85 6.09 30.65 0.19 -3.66 16 18 C -0.11 -5.02 5.03 30.67 0.15 -4.87 16 19 C 0.06 3.06 2.26 -11.49 -0.03 3.04 16 20 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 21 C -0.54 -30.57 8.56 25.60 0.22 -30.35 16 22 H 0.05 2.64 7.74 -2.91 -0.02 2.62 16 23 C 0.02 1.17 5.30 84.66 0.45 1.62 16 24 N -0.91 -52.07 11.36 21.45 0.24 -51.83 16 25 Si 0.95 44.41 29.54 68.60 2.03 46.44 16 26 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 27 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 28 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 29 C 0.10 4.85 4.33 86.33 0.37 5.22 16 30 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.07 1.05 6.03 -2.39 -0.01 1.03 16 34 H 0.04 0.93 6.66 -2.39 -0.02 0.91 16 35 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 36 H 0.13 1.80 7.33 -2.39 -0.02 1.79 16 37 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.12 0.96 7.32 -2.39 -0.02 0.94 16 39 H 0.06 0.51 8.14 -2.38 -0.02 0.49 16 40 H 0.08 0.30 8.14 -2.39 -0.02 0.28 16 41 H 0.08 0.34 8.14 -2.39 -0.02 0.32 16 42 H 0.39 4.79 9.05 -74.06 -0.67 4.12 16 43 H 0.08 2.51 6.62 -2.39 -0.02 2.49 16 44 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 45 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 46 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 47 H 0.02 1.18 8.14 -2.39 -0.02 1.16 16 48 H 0.07 3.66 6.17 -2.39 -0.01 3.65 16 49 H 0.26 14.21 8.31 -92.71 -0.77 13.44 16 50 H 0.03 1.29 8.06 -2.38 -0.02 1.27 16 51 H 0.05 2.32 8.10 -2.38 -0.02 2.30 16 Total: -1.00 -74.81 403.41 0.70 -74.11 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: 0.26 Total: 14.69 kcal Atomic # 6 Polarization: -6.45 SS G_CDS: 7.74 Total: 1.29 kcal Atomic # 7 Polarization: -109.01 SS G_CDS: -5.78 Total: -114.79 kcal Atomic # 8 Polarization: -18.19 SS G_CDS: -3.55 Total: -21.73 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -74.81 0.70 -74.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646814953.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.078 kcal (2) G-P(sol) polarization free energy of solvation -74.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds