Wall clock time and date at job start Tue Mar 31 2020 22:24:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42900 * 114.00044 * 2 1 4 4 C 1.52999 * 109.46860 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47084 * 184.98916 * 4 3 2 6 6 C 1.36729 * 127.13945 * 264.37183 * 5 4 3 7 7 C 1.50704 * 126.34911 * 359.96305 * 6 5 4 8 8 C 1.53004 * 109.46823 * 90.00148 * 7 6 5 9 9 H 1.08998 * 109.46769 * 304.99934 * 8 7 6 10 10 C 1.53002 * 109.46830 * 185.00292 * 8 7 6 11 11 O 1.42900 * 109.47247 * 65.00092 * 8 7 6 12 12 N 1.30299 * 107.30527 * 179.83609 * 6 5 4 13 13 N 1.28528 * 110.05419 * 0.44098 * 12 6 5 14 14 C 1.31222 * 109.85835 * 359.72212 * 13 12 6 15 15 N 1.38577 * 126.47266 * 180.02562 * 14 13 12 16 16 C 1.46844 * 111.00429 * 68.88199 * 15 14 13 17 17 C 1.53032 * 109.52658 * 174.15818 * 16 15 14 18 18 C 1.53119 * 109.27553 * 59.18326 * 17 16 15 19 19 C 1.53124 * 109.16282 * 302.34574 * 18 17 16 20 20 H 1.09006 * 109.50067 * 297.71599 * 19 18 17 21 21 C 1.50694 * 109.53974 * 177.61615 * 19 18 17 22 22 H 1.08001 * 119.99981 * 240.17641 * 21 19 18 23 23 C 1.37881 * 119.99938 * 60.17218 * 21 19 18 24 24 N 1.31509 * 120.00179 * 0.02562 * 23 21 19 25 25 Si 1.86800 * 119.99632 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47483 * 60.00278 * 25 23 21 27 27 H 1.48505 * 109.47017 * 180.02562 * 25 23 21 28 28 H 1.48508 * 109.47119 * 300.00012 * 25 23 21 29 29 C 1.46845 * 110.99760 * 304.67342 * 15 14 13 30 30 H 1.09003 * 109.47438 * 300.00517 * 1 2 3 31 31 H 1.09004 * 109.47130 * 60.00259 * 1 2 3 32 32 H 1.08998 * 109.47321 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.46802 * 59.99891 * 3 2 1 34 34 H 1.08996 * 109.47048 * 299.99752 * 3 2 1 35 35 H 1.08999 * 109.47005 * 64.99177 * 4 3 2 36 36 H 1.09000 * 109.47323 * 304.99089 * 4 3 2 37 37 H 1.08998 * 109.47013 * 209.99714 * 7 6 5 38 38 H 1.08996 * 109.46982 * 330.00179 * 7 6 5 39 39 H 1.08995 * 109.47121 * 179.97438 * 10 8 7 40 40 H 1.09003 * 109.47109 * 299.99874 * 10 8 7 41 41 H 1.09003 * 109.47113 * 59.99837 * 10 8 7 42 42 H 0.96697 * 113.99393 * 179.97438 * 11 8 7 43 43 H 1.09006 * 109.46564 * 294.18220 * 16 15 14 44 44 H 1.09004 * 109.46100 * 54.14199 * 16 15 14 45 45 H 1.08993 * 109.50874 * 299.24166 * 17 16 15 46 46 H 1.09003 * 109.50794 * 179.11935 * 17 16 15 47 47 H 1.08996 * 109.52457 * 182.44091 * 18 17 16 48 48 H 1.09005 * 109.57558 * 62.28067 * 18 17 16 49 49 H 0.96996 * 119.99979 * 179.97438 * 24 23 21 50 50 H 1.08996 * 109.46289 * 305.85638 * 29 15 14 51 51 H 1.08998 * 109.46169 * 65.83534 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 7 4.1309 2.5177 0.1208 6 6 4.5720 3.3194 -0.8952 7 6 4.5386 2.9962 -2.3668 8 6 3.2164 3.4807 -2.9654 9 1 2.3854 3.0501 -2.4068 10 6 3.1284 3.0431 -4.4288 11 8 3.1533 4.9063 -2.8898 12 7 5.0242 4.4157 -0.3554 13 7 4.9081 4.3578 0.9233 14 6 4.3658 3.2144 1.2703 15 7 4.0843 2.7941 2.5605 16 6 2.9945 3.5853 3.1458 17 6 2.6136 3.0020 4.5084 18 6 3.8375 3.0256 5.4282 19 6 4.9737 2.2351 4.7734 20 1 4.6703 1.1953 4.6512 21 6 6.2015 2.3019 5.6447 22 1 7.1139 2.7331 5.2600 23 6 6.1599 1.8125 6.9331 24 7 5.0491 1.2871 7.4014 25 14 7.6817 1.8959 8.0133 26 1 8.0928 3.3130 8.1809 27 1 7.3780 1.3076 9.3426 28 1 8.7843 1.1328 7.3750 29 6 5.2861 2.8406 3.4031 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.6886 1.8463 0.8900 34 1 1.6886 1.8463 -0.8900 35 1 3.8637 0.7226 -0.9305 36 1 3.8508 0.5685 0.8428 37 1 5.3684 3.4952 -2.8673 38 1 4.6264 1.9185 -2.5042 39 1 2.1864 3.3878 -4.8551 40 1 3.9596 3.4736 -4.9874 41 1 3.1766 1.9556 -4.4864 42 1 2.3402 5.2837 -3.2525 43 1 3.3218 4.6175 3.2711 44 1 2.1290 3.5569 2.4838 45 1 2.2731 1.9744 4.3821 46 1 1.8153 3.5989 4.9495 47 1 3.5824 2.5713 6.3856 48 1 4.1551 4.0562 5.5871 49 1 5.0200 0.9425 8.3077 50 1 6.0850 2.2713 2.9280 51 1 5.6025 3.8762 3.5274 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649102490.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:21 Heat of formation + Delta-G solvation = -17.101165 kcal Electronic energy + Delta-G solvation = -31172.454013 eV Core-core repulsion = 27108.354421 eV Total energy + Delta-G solvation = -4064.099591 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.89 seconds Orbital eigenvalues (eV) -42.80456 -38.38231 -38.29398 -37.82231 -35.16355 -33.97689 -32.82968 -31.73831 -30.15019 -29.98632 -29.49298 -26.83639 -26.56638 -25.01997 -23.99895 -23.45735 -22.26158 -21.60883 -20.85390 -20.29366 -18.59581 -17.70178 -17.53812 -16.77473 -16.36147 -16.22511 -15.85152 -15.52209 -15.26441 -15.13104 -14.78071 -14.48202 -14.00387 -13.98263 -13.49664 -13.31764 -12.92862 -12.76218 -12.69454 -12.60057 -12.54877 -12.43128 -12.32429 -11.84174 -11.80885 -11.64959 -11.41034 -11.18087 -10.93514 -10.80514 -10.73478 -10.35110 -10.30874 -10.21626 -10.04211 -9.96085 -9.91461 -9.56039 -9.24504 -8.88534 -8.63551 -8.36819 -8.13845 -5.99784 -4.05639 1.84641 2.24856 3.08016 3.33770 3.37751 3.41201 3.49207 3.88226 4.09987 4.25447 4.40475 4.47185 4.52731 4.64182 4.68482 4.81032 4.93899 4.97710 5.04257 5.09307 5.22740 5.29658 5.30606 5.38723 5.40014 5.41465 5.42452 5.55843 5.60339 5.72052 5.81180 5.86961 5.96977 6.06886 6.25408 6.38588 6.40481 6.57447 6.68019 6.71924 6.79170 6.88847 7.07118 7.31473 7.39109 7.41022 7.72651 7.76402 8.00650 8.11107 8.42745 8.97148 9.00943 9.58874 11.06462 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.014238 B = 0.003136 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.057955 B = 8925.081994 C = 9960.704518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.384 6.384 3 C 0.053 3.947 4 C 0.115 3.885 5 N -0.468 5.468 6 C 0.171 3.829 7 C -0.023 4.023 8 C 0.106 3.894 9 H 0.050 0.950 10 C -0.186 4.186 11 O -0.551 6.551 12 N -0.269 5.269 13 N -0.314 5.314 14 C 0.366 3.634 15 N -0.469 5.469 16 C 0.076 3.924 17 C -0.116 4.116 18 C -0.113 4.113 19 C 0.058 3.942 20 H 0.035 0.965 21 C -0.515 4.515 22 H 0.055 0.945 23 C 0.065 3.935 24 N -0.889 5.889 25 Si 0.892 3.108 26 H -0.277 1.277 27 H -0.287 1.287 28 H -0.277 1.277 29 C 0.081 3.919 30 H 0.045 0.955 31 H 0.040 0.960 32 H 0.090 0.910 33 H 0.062 0.938 34 H 0.049 0.951 35 H 0.098 0.902 36 H 0.114 0.886 37 H 0.107 0.893 38 H 0.095 0.905 39 H 0.061 0.939 40 H 0.069 0.931 41 H 0.067 0.933 42 H 0.374 0.626 43 H 0.045 0.955 44 H 0.054 0.946 45 H 0.062 0.938 46 H 0.054 0.946 47 H 0.094 0.906 48 H 0.035 0.965 49 H 0.261 0.739 50 H 0.060 0.940 51 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.086 -1.457 -21.428 24.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.302 6.302 3 C -0.025 4.025 4 C -0.008 4.008 5 N -0.163 5.163 6 C -0.096 4.096 7 C -0.063 4.063 8 C 0.046 3.954 9 H 0.068 0.932 10 C -0.243 4.243 11 O -0.355 6.355 12 N -0.109 5.109 13 N -0.157 5.157 14 C 0.011 3.989 15 N -0.195 5.195 16 C -0.051 4.051 17 C -0.154 4.154 18 C -0.151 4.151 19 C 0.039 3.961 20 H 0.053 0.947 21 C -0.554 4.554 22 H 0.073 0.927 23 C -0.137 4.137 24 N -0.527 5.527 25 Si 0.720 3.280 26 H -0.202 1.202 27 H -0.213 1.213 28 H -0.203 1.203 29 C -0.045 4.045 30 H 0.064 0.936 31 H 0.058 0.942 32 H 0.108 0.892 33 H 0.080 0.920 34 H 0.067 0.933 35 H 0.116 0.884 36 H 0.132 0.868 37 H 0.125 0.875 38 H 0.113 0.887 39 H 0.080 0.920 40 H 0.088 0.912 41 H 0.086 0.914 42 H 0.221 0.779 43 H 0.063 0.937 44 H 0.072 0.928 45 H 0.081 0.919 46 H 0.073 0.927 47 H 0.113 0.887 48 H 0.054 0.946 49 H 0.071 0.929 50 H 0.078 0.922 51 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -10.004 -0.918 -20.858 23.152 hybrid contribution -0.378 -0.295 0.300 0.565 sum -10.382 -1.213 -20.559 23.063 Atomic orbital electron populations 1.22774 0.80217 1.03092 1.00183 1.87816 1.20301 1.26580 1.95497 1.22728 0.92991 0.85574 1.01197 1.21488 0.92114 0.81364 1.05882 1.46220 1.47233 1.16177 1.06707 1.24408 1.02989 0.89763 0.92438 1.20042 0.99159 1.01729 0.85376 1.21712 0.96415 0.82470 0.94797 0.93188 1.22519 1.02934 1.02345 0.96517 1.86716 1.44454 1.19014 1.85352 1.74045 1.18161 1.17818 1.00889 1.74745 1.19035 1.16308 1.05580 1.22762 0.99519 0.88383 0.88259 1.58966 1.11355 1.53159 0.96055 1.22088 0.91265 0.95264 0.96449 1.21709 0.99658 1.00370 0.93627 1.21697 0.93519 0.99477 1.00408 1.18693 0.94352 0.95463 0.87568 0.94656 1.21053 0.96780 1.39871 0.97675 0.92682 1.24904 0.95996 0.94959 0.97798 1.69867 1.25892 1.40259 1.16716 0.86659 0.83397 0.78385 0.79572 1.20246 1.21315 1.20291 1.22447 0.87181 1.00416 0.94440 0.93596 0.94171 0.89164 0.91962 0.93252 0.88398 0.86754 0.87473 0.88670 0.92017 0.91226 0.91362 0.77912 0.93685 0.92796 0.91928 0.92715 0.88729 0.94568 0.92944 0.92185 0.93920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.38 16 2 O -0.38 -4.18 10.70 -35.23 -0.38 -4.55 16 3 C 0.05 0.57 6.26 37.16 0.23 0.80 16 4 C 0.12 1.34 6.44 -4.04 -0.03 1.32 16 5 N -0.47 -6.95 2.81 -114.08 -0.32 -7.27 16 6 C 0.17 2.52 7.09 -154.02 -1.09 1.42 16 7 C -0.02 -0.23 5.29 -27.88 -0.15 -0.38 16 8 C 0.11 0.87 3.57 -26.73 -0.10 0.78 16 9 H 0.05 0.41 6.85 -51.93 -0.36 0.05 16 10 C -0.19 -1.00 9.53 37.16 0.35 -0.65 16 11 O -0.55 -5.66 13.07 -35.23 -0.46 -6.12 16 12 N -0.27 -5.08 12.18 32.99 0.40 -4.68 16 13 N -0.31 -6.45 12.12 30.32 0.37 -6.08 16 14 C 0.37 6.78 6.47 -318.87 -2.06 4.72 16 15 N -0.47 -8.99 4.67 -174.55 -0.82 -9.80 16 16 C 0.08 1.38 5.39 -3.84 -0.02 1.36 16 17 C -0.12 -2.17 6.09 -26.65 -0.16 -2.33 16 18 C -0.11 -2.60 5.03 -26.61 -0.13 -2.74 16 19 C 0.06 1.43 2.26 -91.69 -0.21 1.23 16 20 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16 21 C -0.52 -14.06 8.56 -34.44 -0.29 -14.35 16 22 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 23 C 0.06 1.78 5.31 -17.82 -0.09 1.68 16 24 N -0.89 -24.89 11.36 55.43 0.63 -24.26 16 25 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 26 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 27 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 28 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 29 C 0.08 1.79 4.53 -3.83 -0.02 1.77 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.04 0.26 8.14 -51.93 -0.42 -0.17 16 32 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.77 8.06 -51.93 -0.42 0.36 16 34 H 0.05 0.46 6.85 -51.93 -0.36 0.10 16 35 H 0.10 0.85 7.10 -51.93 -0.37 0.49 16 36 H 0.11 1.50 8.14 -51.93 -0.42 1.08 16 37 H 0.11 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.10 0.66 7.18 -51.93 -0.37 0.29 16 39 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 40 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.37 2.22 9.08 45.56 0.41 2.63 16 43 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 44 H 0.05 0.87 8.03 -51.93 -0.42 0.45 16 45 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 46 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 47 H 0.09 2.42 6.17 -51.93 -0.32 2.10 16 48 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 49 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 50 H 0.06 1.35 8.10 -51.93 -0.42 0.93 16 51 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 408.07 15.07 6.15 6.15 Total: -1.00 -33.19 408.07 -10.18 -43.37 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -8.08 Total: 0.98 kcal Atomic # 6 Polarization: -1.33 SS G_CDS: -2.65 Total: -3.98 kcal Atomic # 7 Polarization: -52.36 SS G_CDS: 0.26 Total: -52.10 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: -0.84 Total: -10.68 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -33.19 -10.18 -43.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649102490.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.268 kcal (2) G-P(sol) polarization free energy of solvation -33.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.89 seconds