Wall clock time and date at job start Tue Mar 31 2020 22:24:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42894 * 114.00373 * 2 1 4 4 C 1.52995 * 109.47697 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47477 * 179.97438 * 4 3 2 6 6 C 1.36737 * 127.13622 * 264.93668 * 5 4 3 7 7 C 1.50699 * 126.34765 * 0.03790 * 6 5 4 8 8 C 1.53002 * 109.47085 * 270.24606 * 7 6 5 9 9 H 1.08994 * 109.47581 * 305.00045 * 8 7 6 10 10 C 1.53003 * 109.47069 * 185.00091 * 8 7 6 11 11 O 1.42902 * 109.47022 * 65.00316 * 8 7 6 12 12 N 1.30295 * 107.30485 * 180.22745 * 6 5 4 13 13 N 1.28523 * 110.05368 * 359.77510 * 12 6 5 14 14 C 1.31219 * 109.85971 * 359.97438 * 13 12 6 15 15 N 1.38577 * 126.47036 * 179.97438 * 14 13 12 16 16 C 1.46844 * 111.00487 * 271.61942 * 15 14 13 17 17 C 1.53031 * 109.52913 * 185.84260 * 16 15 14 18 18 C 1.53127 * 109.27879 * 300.82656 * 17 16 15 19 19 C 1.53119 * 109.16004 * 57.64847 * 18 17 16 20 20 H 1.09000 * 109.49793 * 62.29265 * 19 18 17 21 21 C 1.50704 * 109.50103 * 182.40539 * 19 18 17 22 22 H 1.08000 * 119.99541 * 119.80199 * 21 19 18 23 23 C 1.37874 * 119.99896 * 299.80703 * 21 19 18 24 24 N 1.31510 * 120.00550 * 359.97438 * 23 21 19 25 25 Si 1.86811 * 119.99692 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.46802 * 90.00062 * 25 23 21 27 27 H 1.48492 * 109.47220 * 209.99879 * 25 23 21 28 28 H 1.48503 * 109.46878 * 329.99956 * 25 23 21 29 29 C 1.46852 * 111.00424 * 35.83741 * 15 14 13 30 30 H 1.08995 * 109.47454 * 60.00101 * 1 2 3 31 31 H 1.09003 * 109.47553 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47030 * 299.99857 * 1 2 3 33 33 H 1.09004 * 109.47352 * 59.99575 * 3 2 1 34 34 H 1.09004 * 109.47035 * 300.00579 * 3 2 1 35 35 H 1.09011 * 109.47083 * 59.99723 * 4 3 2 36 36 H 1.09004 * 109.47219 * 300.00306 * 4 3 2 37 37 H 1.09001 * 109.47511 * 30.24971 * 7 6 5 38 38 H 1.09001 * 109.47381 * 150.25248 * 7 6 5 39 39 H 1.08994 * 109.47266 * 60.00344 * 10 8 7 40 40 H 1.09004 * 109.47170 * 180.02562 * 10 8 7 41 41 H 1.09003 * 109.46952 * 300.00189 * 10 8 7 42 42 H 0.96692 * 114.00409 * 179.97438 * 11 8 7 43 43 H 1.09001 * 109.46483 * 305.86377 * 16 15 14 44 44 H 1.09000 * 109.46067 * 65.82807 * 16 15 14 45 45 H 1.09003 * 109.50754 * 180.88366 * 17 16 15 46 46 H 1.09004 * 109.53687 * 60.78199 * 17 16 15 47 47 H 1.09009 * 109.51888 * 297.74805 * 18 17 16 48 48 H 1.09003 * 109.52346 * 177.55781 * 18 17 16 49 49 H 0.96995 * 120.00206 * 179.97438 * 24 23 21 50 50 H 1.09004 * 109.45696 * 294.17198 * 29 15 14 51 51 H 1.08995 * 109.45752 * 54.15034 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 4.1313 2.5229 -0.0013 6 6 4.5545 3.2376 -1.0875 7 6 4.4954 2.7943 -2.5266 8 6 5.7852 2.0538 -2.8855 9 1 6.6428 2.6879 -2.6610 10 6 5.7795 1.7131 -4.3771 11 8 5.8709 0.8489 -2.1220 12 7 5.0221 4.3713 -0.6472 13 7 4.9196 4.4230 0.6329 14 6 4.3761 3.3162 1.0816 15 7 4.1076 3.0083 2.4058 16 6 5.2641 2.3642 3.0414 17 6 4.8845 1.9085 4.4521 18 6 4.4378 3.1220 5.2723 19 6 3.2635 3.8028 4.5638 20 1 2.4222 3.1120 4.5081 21 6 2.8558 5.0325 5.3338 22 1 2.8968 6.0032 4.8622 23 6 2.4306 4.9181 6.6404 24 7 2.3803 3.7360 7.2146 25 14 1.9259 6.4424 7.5951 26 1 0.4736 6.6871 7.4050 27 1 2.2087 6.2386 9.0386 28 1 2.6941 7.6131 7.1006 29 6 3.6902 4.2036 3.1499 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.6886 1.8464 0.8900 34 1 1.6886 1.8464 -0.8900 35 1 3.8567 0.6438 -0.8909 36 1 3.8575 0.6435 0.8891 37 1 3.6434 2.1292 -2.6672 38 1 4.3858 3.6664 -3.1712 39 1 5.7142 2.6321 -4.9595 40 1 6.6982 1.1851 -4.6328 41 1 4.9218 1.0789 -4.6016 42 1 6.6654 0.3269 -2.2988 43 1 5.5690 1.5005 2.4505 44 1 6.0891 3.0742 3.0988 45 1 5.7477 1.4445 4.9294 46 1 4.0688 1.1876 4.3952 47 1 5.2659 3.8252 5.3629 48 1 4.1253 2.7961 6.2644 49 1 2.0815 3.6557 8.1338 50 1 4.5226 4.9050 3.2067 51 1 2.8518 4.6757 2.6378 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649102492.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:31 Heat of formation + Delta-G solvation = -19.985775 kcal Electronic energy + Delta-G solvation = -31192.754286 eV Core-core repulsion = 27128.529608 eV Total energy + Delta-G solvation = -4064.224677 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 2.48 seconds Orbital eigenvalues (eV) -42.77383 -38.38447 -38.13576 -37.85979 -35.03376 -33.96929 -32.88427 -31.75636 -30.01627 -29.96970 -29.45055 -26.82990 -26.43142 -25.01324 -23.98173 -23.33547 -22.20619 -21.53723 -20.77197 -20.32504 -18.57870 -17.73706 -17.38037 -16.70339 -16.31877 -16.09486 -15.85838 -15.39253 -15.24136 -15.00382 -14.80312 -14.48910 -13.99254 -13.84493 -13.44697 -13.30707 -12.97519 -12.76789 -12.68464 -12.54619 -12.46877 -12.39787 -12.30756 -11.85710 -11.62979 -11.50805 -11.40126 -11.20067 -10.95456 -10.78774 -10.70038 -10.38340 -10.28232 -10.19288 -9.96248 -9.90100 -9.85098 -9.54222 -9.21735 -9.03549 -8.69601 -8.33323 -7.97425 -5.99254 -4.04904 1.90696 2.34214 3.05990 3.32081 3.38722 3.43137 3.64111 3.82474 4.14063 4.31380 4.47787 4.55501 4.66844 4.74923 4.83480 4.87217 5.01942 5.14011 5.20376 5.26246 5.30896 5.31688 5.36603 5.42112 5.46762 5.51021 5.52665 5.61426 5.68127 5.72138 5.79232 5.89653 5.96495 6.11721 6.29218 6.41289 6.42863 6.57934 6.70369 6.79023 6.88447 6.95011 7.08175 7.30671 7.32240 7.42084 7.73885 7.77328 8.01370 8.11975 8.43652 8.98161 9.01229 9.59626 11.07063 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.013644 B = 0.003175 C = 0.002903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.621215 B = 8817.780328 C = 9642.718429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.387 6.387 3 C 0.050 3.950 4 C 0.120 3.880 5 N -0.458 5.458 6 C 0.172 3.828 7 C -0.022 4.022 8 C 0.105 3.895 9 H 0.064 0.936 10 C -0.184 4.184 11 O -0.566 6.566 12 N -0.289 5.289 13 N -0.317 5.317 14 C 0.369 3.631 15 N -0.465 5.465 16 C 0.073 3.927 17 C -0.116 4.116 18 C -0.113 4.113 19 C 0.057 3.943 20 H 0.034 0.966 21 C -0.513 4.513 22 H 0.056 0.944 23 C 0.064 3.936 24 N -0.889 5.889 25 Si 0.891 3.109 26 H -0.281 1.281 27 H -0.287 1.287 28 H -0.274 1.274 29 C 0.083 3.917 30 H 0.040 0.960 31 H 0.088 0.912 32 H 0.047 0.953 33 H 0.067 0.933 34 H 0.049 0.951 35 H 0.111 0.889 36 H 0.102 0.898 37 H 0.087 0.913 38 H 0.112 0.888 39 H 0.069 0.931 40 H 0.061 0.939 41 H 0.065 0.935 42 H 0.379 0.621 43 H 0.058 0.942 44 H 0.041 0.959 45 H 0.055 0.945 46 H 0.063 0.937 47 H 0.035 0.965 48 H 0.095 0.905 49 H 0.260 0.740 50 H 0.044 0.956 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.241 -10.221 -20.761 23.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.305 6.305 3 C -0.028 4.028 4 C -0.003 4.003 5 N -0.153 5.153 6 C -0.095 4.095 7 C -0.062 4.062 8 C 0.045 3.955 9 H 0.082 0.918 10 C -0.242 4.242 11 O -0.373 6.373 12 N -0.130 5.130 13 N -0.160 5.160 14 C 0.013 3.987 15 N -0.191 5.191 16 C -0.054 4.054 17 C -0.154 4.154 18 C -0.151 4.151 19 C 0.038 3.962 20 H 0.053 0.947 21 C -0.552 4.552 22 H 0.074 0.926 23 C -0.137 4.137 24 N -0.528 5.528 25 Si 0.719 3.281 26 H -0.207 1.207 27 H -0.213 1.213 28 H -0.199 1.199 29 C -0.042 4.042 30 H 0.058 0.942 31 H 0.107 0.893 32 H 0.066 0.934 33 H 0.086 0.914 34 H 0.067 0.933 35 H 0.129 0.871 36 H 0.120 0.880 37 H 0.106 0.894 38 H 0.130 0.870 39 H 0.088 0.912 40 H 0.080 0.920 41 H 0.084 0.916 42 H 0.227 0.773 43 H 0.076 0.924 44 H 0.059 0.941 45 H 0.073 0.927 46 H 0.082 0.918 47 H 0.054 0.946 48 H 0.113 0.887 49 H 0.070 0.930 50 H 0.062 0.938 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.953 -9.221 -20.314 22.503 hybrid contribution -0.031 0.061 0.339 0.346 sum 2.923 -9.161 -19.975 22.169 Atomic orbital electron populations 1.22768 0.80242 1.02885 1.00392 1.87773 1.20307 1.26838 1.95564 1.22740 0.93047 0.85432 1.01590 1.21487 0.91820 0.80614 1.06394 1.46023 1.47008 1.15915 1.06318 1.24362 1.03282 0.90590 0.91315 1.20049 0.98241 1.00764 0.87131 1.21777 0.97401 0.86228 0.90075 0.91837 1.22494 1.02816 1.02764 0.96089 1.86498 1.47943 1.35954 1.66884 1.73965 1.18862 1.16273 1.03884 1.74700 1.18622 1.19698 1.03000 1.22823 0.98330 0.88199 0.89340 1.58953 1.34610 1.30564 0.94996 1.22126 0.89779 0.97168 0.96329 1.21711 1.00345 1.00348 0.92963 1.21705 0.97930 0.93971 1.01506 1.18710 0.94194 0.96176 0.87140 0.94739 1.21095 1.43767 0.93169 0.97168 0.92572 1.24909 0.95402 0.95853 0.97551 1.69879 1.47364 1.22247 1.13280 0.86603 0.78871 0.83505 0.79095 1.20742 1.21256 1.19861 1.22389 0.98998 0.86974 0.95856 0.94152 0.89346 0.93427 0.91441 0.93303 0.87110 0.87953 0.89443 0.87000 0.91171 0.92013 0.91587 0.77312 0.92397 0.94061 0.92659 0.91809 0.94609 0.88706 0.93018 0.93755 0.92014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 101.05 1.11 1.44 16 2 O -0.39 -4.83 10.70 -35.23 -0.38 -5.21 16 3 C 0.05 0.63 6.26 37.15 0.23 0.87 16 4 C 0.12 1.55 6.33 -4.05 -0.03 1.53 16 5 N -0.46 -7.04 2.81 -114.09 -0.32 -7.36 16 6 C 0.17 2.52 7.09 -154.02 -1.09 1.43 16 7 C -0.02 -0.21 5.08 -27.88 -0.14 -0.35 16 8 C 0.11 0.84 3.57 -26.73 -0.10 0.75 16 9 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 10 C -0.18 -0.98 9.53 37.16 0.35 -0.63 16 11 O -0.57 -4.83 11.62 -35.23 -0.41 -5.24 16 12 N -0.29 -5.28 12.18 32.99 0.40 -4.88 16 13 N -0.32 -6.49 11.69 30.31 0.35 -6.14 16 14 C 0.37 6.93 6.71 -318.88 -2.14 4.79 16 15 N -0.47 -9.06 4.67 -174.56 -0.82 -9.87 16 16 C 0.07 1.32 5.39 -3.84 -0.02 1.30 16 17 C -0.12 -2.18 6.09 -26.65 -0.16 -2.35 16 18 C -0.11 -2.62 5.03 -26.60 -0.13 -2.75 16 19 C 0.06 1.41 2.26 -91.69 -0.21 1.20 16 20 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 21 C -0.51 -14.06 8.56 -34.44 -0.29 -14.35 16 22 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 23 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 24 N -0.89 -24.98 11.36 55.43 0.63 -24.35 16 25 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 26 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 27 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 28 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 29 C 0.08 1.86 4.31 -3.84 -0.02 1.85 16 30 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.11 1.27 6.13 -51.92 -0.32 0.95 16 36 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 37 H 0.09 0.74 7.79 -51.93 -0.40 0.34 16 38 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 41 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.38 1.81 9.08 45.56 0.41 2.22 16 43 H 0.06 0.94 8.10 -51.93 -0.42 0.52 16 44 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 46 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 47 H 0.04 0.84 8.14 -51.92 -0.42 0.41 16 48 H 0.09 2.44 6.17 -51.93 -0.32 2.12 16 49 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 50 H 0.04 1.04 8.06 -51.93 -0.42 0.63 16 51 H 0.06 1.42 8.10 -51.93 -0.42 1.00 16 LS Contribution 408.20 15.07 6.15 6.15 Total: -1.00 -32.28 408.20 -10.33 -42.61 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -8.20 Total: 1.59 kcal Atomic # 6 Polarization: -0.89 SS G_CDS: -2.73 Total: -3.62 kcal Atomic # 7 Polarization: -52.85 SS G_CDS: 0.25 Total: -52.60 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: -0.79 Total: -10.44 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -32.28 -10.33 -42.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649102492.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.627 kcal (2) G-P(sol) polarization free energy of solvation -32.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.48 seconds