Wall clock time and date at job start Tue Mar 31 2020 22:24:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42894 * 114.00373 * 2 1 4 4 C 1.52995 * 109.47697 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47477 * 179.97438 * 4 3 2 6 6 C 1.36737 * 127.13622 * 264.93668 * 5 4 3 7 7 C 1.50699 * 126.34765 * 0.03790 * 6 5 4 8 8 C 1.53002 * 109.47085 * 270.24606 * 7 6 5 9 9 H 1.08994 * 109.47581 * 305.00045 * 8 7 6 10 10 C 1.53003 * 109.47069 * 185.00091 * 8 7 6 11 11 O 1.42902 * 109.47022 * 65.00316 * 8 7 6 12 12 N 1.30295 * 107.30485 * 180.22745 * 6 5 4 13 13 N 1.28523 * 110.05368 * 359.77510 * 12 6 5 14 14 C 1.31219 * 109.85971 * 359.97438 * 13 12 6 15 15 N 1.38577 * 126.47036 * 179.97438 * 14 13 12 16 16 C 1.46844 * 111.00487 * 271.61942 * 15 14 13 17 17 C 1.53031 * 109.52913 * 185.84260 * 16 15 14 18 18 C 1.53127 * 109.27879 * 300.82656 * 17 16 15 19 19 C 1.53119 * 109.16004 * 57.64847 * 18 17 16 20 20 H 1.09000 * 109.49793 * 62.29265 * 19 18 17 21 21 C 1.50704 * 109.50103 * 182.40539 * 19 18 17 22 22 H 1.08000 * 119.99541 * 119.80199 * 21 19 18 23 23 C 1.37874 * 119.99896 * 299.80703 * 21 19 18 24 24 N 1.31510 * 120.00550 * 359.97438 * 23 21 19 25 25 Si 1.86811 * 119.99692 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.46802 * 90.00062 * 25 23 21 27 27 H 1.48492 * 109.47220 * 209.99879 * 25 23 21 28 28 H 1.48503 * 109.46878 * 329.99956 * 25 23 21 29 29 C 1.46852 * 111.00424 * 35.83741 * 15 14 13 30 30 H 1.08995 * 109.47454 * 60.00101 * 1 2 3 31 31 H 1.09003 * 109.47553 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47030 * 299.99857 * 1 2 3 33 33 H 1.09004 * 109.47352 * 59.99575 * 3 2 1 34 34 H 1.09004 * 109.47035 * 300.00579 * 3 2 1 35 35 H 1.09011 * 109.47083 * 59.99723 * 4 3 2 36 36 H 1.09004 * 109.47219 * 300.00306 * 4 3 2 37 37 H 1.09001 * 109.47511 * 30.24971 * 7 6 5 38 38 H 1.09001 * 109.47381 * 150.25248 * 7 6 5 39 39 H 1.08994 * 109.47266 * 60.00344 * 10 8 7 40 40 H 1.09004 * 109.47170 * 180.02562 * 10 8 7 41 41 H 1.09003 * 109.46952 * 300.00189 * 10 8 7 42 42 H 0.96692 * 114.00409 * 179.97438 * 11 8 7 43 43 H 1.09001 * 109.46483 * 305.86377 * 16 15 14 44 44 H 1.09000 * 109.46067 * 65.82807 * 16 15 14 45 45 H 1.09003 * 109.50754 * 180.88366 * 17 16 15 46 46 H 1.09004 * 109.53687 * 60.78199 * 17 16 15 47 47 H 1.09009 * 109.51888 * 297.74805 * 18 17 16 48 48 H 1.09003 * 109.52346 * 177.55781 * 18 17 16 49 49 H 0.96995 * 120.00206 * 179.97438 * 24 23 21 50 50 H 1.09004 * 109.45696 * 294.17198 * 29 15 14 51 51 H 1.08995 * 109.45752 * 54.15034 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 4.1313 2.5229 -0.0013 6 6 4.5545 3.2376 -1.0875 7 6 4.4954 2.7943 -2.5266 8 6 5.7852 2.0538 -2.8855 9 1 6.6428 2.6879 -2.6610 10 6 5.7795 1.7131 -4.3771 11 8 5.8709 0.8489 -2.1220 12 7 5.0221 4.3713 -0.6472 13 7 4.9196 4.4230 0.6329 14 6 4.3761 3.3162 1.0816 15 7 4.1076 3.0083 2.4058 16 6 5.2641 2.3642 3.0414 17 6 4.8845 1.9085 4.4521 18 6 4.4378 3.1220 5.2723 19 6 3.2635 3.8028 4.5638 20 1 2.4222 3.1120 4.5081 21 6 2.8558 5.0325 5.3338 22 1 2.8968 6.0032 4.8622 23 6 2.4306 4.9181 6.6404 24 7 2.3803 3.7360 7.2146 25 14 1.9259 6.4424 7.5951 26 1 0.4736 6.6871 7.4050 27 1 2.2087 6.2386 9.0386 28 1 2.6941 7.6131 7.1006 29 6 3.6902 4.2036 3.1499 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.6886 1.8464 0.8900 34 1 1.6886 1.8464 -0.8900 35 1 3.8567 0.6438 -0.8909 36 1 3.8575 0.6435 0.8891 37 1 3.6434 2.1292 -2.6672 38 1 4.3858 3.6664 -3.1712 39 1 5.7142 2.6321 -4.9595 40 1 6.6982 1.1851 -4.6328 41 1 4.9218 1.0789 -4.6016 42 1 6.6654 0.3269 -2.2988 43 1 5.5690 1.5005 2.4505 44 1 6.0891 3.0742 3.0988 45 1 5.7477 1.4445 4.9294 46 1 4.0688 1.1876 4.3952 47 1 5.2659 3.8252 5.3629 48 1 4.1253 2.7961 6.2644 49 1 2.0815 3.6557 8.1338 50 1 4.5226 4.9050 3.2067 51 1 2.8518 4.6757 2.6378 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649102492.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:28 Heat of formation + Delta-G solvation = -40.646676 kcal Electronic energy + Delta-G solvation = -31193.650210 eV Core-core repulsion = 27128.529608 eV Total energy + Delta-G solvation = -4065.120601 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -44.09709 -39.98421 -39.08942 -38.56326 -36.26148 -35.72555 -34.06885 -33.18344 -31.85794 -30.97434 -30.55521 -27.84202 -27.28663 -27.02646 -25.51486 -24.53565 -23.36583 -22.93443 -22.11293 -21.46803 -20.34257 -18.86988 -18.42019 -18.10178 -17.55141 -17.35173 -17.10633 -16.61217 -16.53913 -16.15019 -15.87445 -15.74767 -15.43127 -15.24750 -14.68846 -14.54802 -14.42697 -14.25180 -14.00924 -13.55581 -13.52568 -13.38699 -13.21242 -12.89841 -12.85905 -12.74117 -12.68936 -12.60458 -12.51789 -12.32925 -11.98303 -11.95909 -11.83254 -11.70778 -11.41039 -11.19935 -11.09835 -10.92206 -10.81247 -10.78681 -10.42502 -10.31833 -9.52068 -8.10819 -6.24042 0.63523 1.11463 1.40655 1.41855 1.52257 1.71334 2.39377 2.54628 2.92281 3.16802 3.19185 3.38924 3.61231 3.81721 3.85526 3.91243 4.02488 4.05761 4.11316 4.19828 4.27598 4.29335 4.36017 4.42406 4.46888 4.48770 4.51976 4.58010 4.64599 4.76034 4.76550 4.78121 4.82363 4.87958 4.96014 4.99503 5.02670 5.07711 5.12664 5.26345 5.35973 5.42247 5.60255 5.63228 5.71369 5.97185 5.99997 6.10451 6.27412 6.36478 6.84518 6.88533 7.43405 7.66008 8.94209 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.013644 B = 0.003175 C = 0.002903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.621215 B = 8817.780328 C = 9642.718429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.397 6.397 3 C 0.058 3.942 4 C 0.124 3.876 5 N -0.453 5.453 6 C 0.197 3.803 7 C -0.026 4.026 8 C 0.110 3.890 9 H 0.049 0.951 10 C -0.175 4.175 11 O -0.583 6.583 12 N -0.325 5.325 13 N -0.354 5.354 14 C 0.352 3.648 15 N -0.462 5.462 16 C 0.077 3.923 17 C -0.104 4.104 18 C -0.106 4.106 19 C 0.060 3.940 20 H 0.006 0.994 21 C -0.539 4.539 22 H 0.046 0.954 23 C 0.021 3.979 24 N -0.910 5.910 25 Si 0.952 3.048 26 H -0.276 1.276 27 H -0.279 1.279 28 H -0.273 1.273 29 C 0.105 3.895 30 H 0.056 0.944 31 H 0.109 0.891 32 H 0.037 0.963 33 H 0.038 0.962 34 H 0.063 0.937 35 H 0.133 0.867 36 H 0.096 0.904 37 H 0.106 0.894 38 H 0.130 0.870 39 H 0.077 0.923 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.395 0.605 43 H 0.086 0.914 44 H 0.032 0.968 45 H 0.084 0.916 46 H 0.063 0.937 47 H 0.025 0.975 48 H 0.069 0.931 49 H 0.263 0.737 50 H 0.027 0.973 51 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.411 -11.686 -22.932 25.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.316 6.316 3 C -0.020 4.020 4 C 0.001 3.999 5 N -0.146 5.146 6 C -0.071 4.071 7 C -0.066 4.066 8 C 0.050 3.950 9 H 0.067 0.933 10 C -0.232 4.232 11 O -0.393 6.393 12 N -0.165 5.165 13 N -0.197 5.197 14 C -0.006 4.006 15 N -0.187 5.187 16 C -0.050 4.050 17 C -0.142 4.142 18 C -0.144 4.144 19 C 0.041 3.959 20 H 0.024 0.976 21 C -0.577 4.577 22 H 0.064 0.936 23 C -0.178 4.178 24 N -0.549 5.549 25 Si 0.778 3.222 26 H -0.201 1.201 27 H -0.204 1.204 28 H -0.198 1.198 29 C -0.022 4.022 30 H 0.075 0.925 31 H 0.127 0.873 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.081 0.919 35 H 0.151 0.849 36 H 0.114 0.886 37 H 0.124 0.876 38 H 0.148 0.852 39 H 0.096 0.904 40 H 0.092 0.908 41 H 0.089 0.911 42 H 0.246 0.754 43 H 0.104 0.896 44 H 0.050 0.950 45 H 0.103 0.897 46 H 0.081 0.919 47 H 0.044 0.956 48 H 0.087 0.913 49 H 0.072 0.928 50 H 0.045 0.955 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 3.133 -10.708 -22.505 25.118 hybrid contribution -0.110 0.457 0.925 1.037 sum 3.023 -10.251 -21.580 24.081 Atomic orbital electron populations 1.22978 0.78825 1.04401 1.00716 1.87753 1.21854 1.26350 1.95595 1.22583 0.92919 0.85671 1.00869 1.21619 0.91847 0.79274 1.07140 1.46129 1.46633 1.16437 1.05437 1.25343 0.99800 0.89063 0.92901 1.20450 1.00096 1.02187 0.83847 1.21692 0.95665 0.85843 0.91785 0.93254 1.22404 1.03673 1.03383 0.93742 1.86436 1.49233 1.36169 1.67415 1.73895 1.21145 1.18399 1.03041 1.74592 1.19740 1.20922 1.04444 1.22660 0.99591 0.88956 0.89391 1.58862 1.35435 1.28865 0.95539 1.22140 0.88939 0.97733 0.96149 1.21593 1.01401 0.98283 0.92916 1.21507 0.96756 0.95400 1.00738 1.18579 0.93888 0.94873 0.88555 0.97567 1.21395 1.44619 0.93684 0.98034 0.93558 1.25613 0.95276 0.98639 0.98283 1.69991 1.47533 1.23802 1.13561 0.85652 0.78592 0.80083 0.77909 1.20127 1.20435 1.19763 1.21918 0.97684 0.87745 0.94835 0.92507 0.87297 0.94440 0.94365 0.91855 0.84865 0.88590 0.87565 0.85197 0.90384 0.90844 0.91101 0.75425 0.89562 0.94983 0.89749 0.91852 0.95640 0.91285 0.92817 0.95486 0.93549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 113.37 1.25 1.72 16 2 O -0.40 -9.24 10.70 -148.98 -1.59 -10.83 16 3 C 0.06 1.40 6.26 71.98 0.45 1.85 16 4 C 0.12 2.98 6.33 86.38 0.55 3.53 16 5 N -0.45 -13.47 2.81 -514.86 -1.45 -14.91 16 6 C 0.20 5.52 7.09 137.64 0.98 6.49 16 7 C -0.03 -0.44 5.08 29.85 0.15 -0.28 16 8 C 0.11 1.46 3.57 30.60 0.11 1.57 16 9 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 10 C -0.17 -1.25 9.53 71.98 0.69 -0.57 16 11 O -0.58 -8.22 11.62 -148.98 -1.73 -9.95 16 12 N -0.33 -11.86 12.18 -49.54 -0.60 -12.46 16 13 N -0.35 -14.80 11.69 -58.01 -0.68 -15.48 16 14 C 0.35 13.31 6.71 260.12 1.75 15.06 16 15 N -0.46 -18.33 4.67 -706.18 -3.30 -21.62 16 16 C 0.08 2.76 5.39 86.32 0.47 3.22 16 17 C -0.10 -3.89 6.09 30.65 0.19 -3.70 16 18 C -0.11 -5.04 5.03 30.68 0.15 -4.89 16 19 C 0.06 3.11 2.26 -11.49 -0.03 3.08 16 20 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 21 C -0.54 -30.66 8.56 25.60 0.22 -30.44 16 22 H 0.05 2.65 7.74 -2.91 -0.02 2.63 16 23 C 0.02 1.20 5.30 84.65 0.45 1.64 16 24 N -0.91 -52.22 11.36 21.45 0.24 -51.97 16 25 Si 0.95 44.38 29.54 68.60 2.03 46.41 16 26 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 27 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 28 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 29 C 0.10 4.92 4.31 86.32 0.37 5.29 16 30 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.04 1.15 8.14 -2.38 -0.02 1.13 16 34 H 0.06 1.34 8.14 -2.38 -0.02 1.33 16 35 H 0.13 2.65 6.13 -2.38 -0.01 2.64 16 36 H 0.10 2.47 8.14 -2.38 -0.02 2.45 16 37 H 0.11 1.40 7.79 -2.39 -0.02 1.38 16 38 H 0.13 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 40 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 41 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 42 H 0.40 2.64 9.08 -74.06 -0.67 1.97 16 43 H 0.09 2.63 8.10 -2.39 -0.02 2.61 16 44 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 45 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 46 H 0.06 2.39 8.14 -2.38 -0.02 2.37 16 47 H 0.02 1.22 8.14 -2.38 -0.02 1.20 16 48 H 0.07 3.66 6.17 -2.39 -0.01 3.64 16 49 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 50 H 0.03 1.34 8.06 -2.38 -0.02 1.32 16 51 H 0.05 2.26 8.10 -2.39 -0.02 2.24 16 Total: -1.00 -72.42 408.20 0.89 -71.53 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: 0.24 Total: 15.72 kcal Atomic # 6 Polarization: -4.15 SS G_CDS: 7.74 Total: 3.58 kcal Atomic # 7 Polarization: -110.67 SS G_CDS: -5.78 Total: -116.45 kcal Atomic # 8 Polarization: -17.46 SS G_CDS: -3.33 Total: -20.79 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -72.42 0.89 -71.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649102492.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.884 kcal (2) G-P(sol) polarization free energy of solvation -72.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds