Wall clock time and date at job start Tue Mar 31 2020 22:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47320 * 2 1 4 4 O 1.42896 * 109.47155 * 119.99888 * 2 1 3 5 5 C 1.52995 * 109.47138 * 240.00359 * 2 1 3 6 6 C 1.50706 * 109.47363 * 174.99895 * 5 2 1 7 7 N 1.30282 * 126.34863 * 269.69284 * 6 5 2 8 8 N 1.28531 * 110.05542 * 179.82210 * 7 6 5 9 9 C 1.31215 * 109.85880 * 0.44229 * 8 7 6 10 10 N 1.38580 * 126.47725 * 179.69535 * 9 8 7 11 11 C 1.46903 * 110.99622 * 70.83228 * 10 9 8 12 12 C 1.46899 * 110.99780 * 306.88324 * 10 9 8 13 13 H 1.09001 * 109.47346 * 59.99606 * 12 10 9 14 14 C 1.53001 * 109.47324 * 299.99375 * 12 10 9 15 15 C 1.50702 * 109.46853 * 179.97438 * 12 10 9 16 16 H 1.07993 * 120.00379 * 0.02562 * 15 12 10 17 17 C 1.37882 * 119.99789 * 179.97438 * 15 12 10 18 18 N 1.31512 * 120.00089 * 0.02562 * 17 15 12 19 19 Si 1.86798 * 120.00062 * 179.97438 * 17 15 12 20 20 H 1.48502 * 109.47139 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.47304 * 119.99970 * 19 17 15 22 22 H 1.48496 * 109.47520 * 240.00394 * 19 17 15 23 23 N 1.36454 * 107.05286 * 359.73840 * 9 8 7 24 24 C 1.46502 * 127.13643 * 179.97438 * 23 9 8 25 25 C 1.53004 * 109.46912 * 275.34508 * 24 23 9 26 26 H 1.09004 * 109.86801 * 54.30360 * 25 24 23 27 27 C 1.54105 * 109.87492 * 175.30748 * 25 24 23 28 28 C 1.54812 * 104.18560 * 121.45897 * 27 25 24 29 29 C 1.54994 * 102.09376 * 20.87747 * 28 27 25 30 30 O 1.43737 * 109.87877 * 293.29352 * 25 24 23 31 31 H 1.08992 * 109.47359 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47257 * 59.99820 * 1 2 3 33 33 H 1.09000 * 109.47057 * 299.99859 * 1 2 3 34 34 H 0.96707 * 114.00063 * 60.00453 * 4 2 1 35 35 H 1.08999 * 109.46857 * 294.99748 * 5 2 1 36 36 H 1.09000 * 109.47520 * 54.99659 * 5 2 1 37 37 H 1.09000 * 109.47181 * 62.36767 * 11 10 9 38 38 H 1.09001 * 109.46554 * 182.36892 * 11 10 9 39 39 H 1.08995 * 109.46903 * 302.36359 * 11 10 9 40 40 H 1.09002 * 109.47119 * 300.00939 * 14 12 10 41 41 H 1.09000 * 109.46934 * 59.99764 * 14 12 10 42 42 H 1.08997 * 109.47738 * 180.02562 * 14 12 10 43 43 H 0.97007 * 120.00295 * 179.97438 * 18 17 15 44 44 H 1.08991 * 109.47166 * 35.34876 * 24 23 9 45 45 H 1.09003 * 109.47145 * 155.34867 * 24 23 9 46 46 H 1.08998 * 110.48335 * 240.13317 * 27 25 24 47 47 H 1.09000 * 110.48749 * 2.64482 * 27 25 24 48 48 H 1.08997 * 110.90751 * 139.07782 * 28 27 25 49 49 H 1.09005 * 110.90535 * 262.64448 * 28 27 25 50 50 H 1.08994 * 110.62328 * 81.47789 * 29 28 27 51 51 H 1.09002 * 110.61769 * 204.32286 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.0400 -0.7211 -1.2492 6 6 3.5419 -0.6148 -1.3128 7 7 4.2253 0.3268 -1.8991 8 7 5.4844 0.1110 -1.7577 9 6 5.6734 -0.9941 -1.0758 10 7 6.8947 -1.5510 -0.7315 11 6 7.5707 -0.7445 0.2936 12 6 7.7482 -1.7210 -1.9150 13 1 7.9248 -0.7502 -2.3781 14 6 7.0528 -2.6450 -2.9168 15 6 9.0647 -2.3270 -1.5020 16 1 9.2488 -2.5628 -0.4643 17 6 10.0338 -2.5816 -2.4493 18 7 9.8093 -2.2950 -3.7130 19 14 11.6659 -3.3321 -1.9374 20 1 11.6683 -3.5579 -0.4696 21 1 11.8561 -4.6279 -2.6373 22 1 12.7707 -2.4078 -2.2981 23 7 4.4401 -1.4919 -0.7706 24 6 4.1404 -2.7129 -0.0186 25 6 4.1692 -3.9147 -0.9650 26 1 5.1213 -3.9462 -1.4949 27 6 3.9717 -5.2167 -0.1646 28 6 2.7081 -5.8576 -0.7886 29 6 2.6476 -5.1712 -2.1769 30 8 3.0880 -3.8207 -1.9075 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3633 0.5138 0.8900 34 1 1.7210 -1.5953 1.2329 35 1 1.7516 -1.7714 -1.2056 36 1 1.6053 -0.2617 -2.1370 37 1 6.9657 -0.7277 1.2001 38 1 8.5448 -1.1807 0.5149 39 1 7.7033 0.2731 -0.0738 40 1 6.8761 -3.6158 -2.4536 41 1 6.1007 -2.2063 -3.2153 42 1 7.6861 -2.7715 -3.7948 43 1 10.4913 -2.4737 -4.3794 44 1 4.8859 -2.8493 0.7647 45 1 3.1514 -2.6287 0.4318 46 1 4.8327 -5.8738 -0.2867 47 1 3.8085 -4.9952 0.8901 48 1 2.8298 -6.9358 -0.8927 49 1 1.8216 -5.6232 -0.1992 50 1 3.3243 -5.6609 -2.8771 51 1 1.6284 -5.1756 -2.5632 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649197746.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:24 Heat of formation + Delta-G solvation = -34.703790 kcal Electronic energy + Delta-G solvation = -32277.007837 eV Core-core repulsion = 28212.144939 eV Total energy + Delta-G solvation = -4064.862898 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -43.92001 -40.40323 -39.04348 -38.52803 -35.97639 -34.93150 -33.51997 -33.05766 -31.52911 -31.15920 -30.77113 -28.27743 -27.23507 -26.79952 -26.04080 -23.76310 -23.20998 -22.94761 -22.08488 -21.47152 -21.06714 -18.58634 -18.24054 -17.82582 -17.44579 -17.03053 -16.93432 -16.67884 -16.36919 -16.30458 -16.06706 -15.62172 -15.23121 -14.92995 -14.78413 -14.50871 -14.24068 -13.88345 -13.73688 -13.71736 -13.16169 -13.07687 -13.05354 -12.85522 -12.78880 -12.71356 -12.66247 -12.59466 -12.36818 -12.20113 -12.16182 -12.07262 -12.03123 -11.80379 -11.60222 -11.52511 -11.22455 -11.09312 -11.02446 -10.60999 -10.55572 -9.85454 -9.49969 -8.14996 -6.29854 0.85127 1.40291 1.44067 1.46329 1.57965 1.89299 2.41124 2.84312 3.02858 3.17141 3.23628 3.51674 3.62054 3.70068 3.83907 3.88122 3.92773 4.05257 4.13315 4.16112 4.31097 4.35528 4.40430 4.42777 4.54629 4.60548 4.63073 4.72181 4.78368 4.80223 4.85020 4.86282 4.89679 4.94409 4.96804 4.98777 5.03034 5.09618 5.19871 5.22764 5.24991 5.34141 5.37839 5.56719 5.64931 5.87857 5.92173 6.00365 6.13897 6.64554 6.81398 6.82342 7.39402 7.83822 8.92587 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.012604 B = 0.004093 C = 0.003478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2221.067200 B = 6839.579800 C = 8047.940765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.114 3.886 3 H 0.079 0.921 4 O -0.574 6.574 5 C -0.055 4.055 6 C 0.201 3.799 7 N -0.343 5.343 8 N -0.368 5.368 9 C 0.359 3.641 10 N -0.461 5.461 11 C 0.049 3.951 12 C 0.238 3.762 13 H -0.032 1.032 14 C -0.101 4.101 15 C -0.520 4.520 16 H 0.077 0.923 17 C 0.011 3.989 18 N -0.923 5.923 19 Si 0.971 3.029 20 H -0.257 1.257 21 H -0.280 1.280 22 H -0.285 1.285 23 N -0.450 5.450 24 C 0.120 3.880 25 C 0.058 3.942 26 H 0.041 0.959 27 C -0.141 4.141 28 C -0.139 4.139 29 C 0.035 3.965 30 O -0.390 6.390 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.385 0.615 35 H 0.113 0.887 36 H 0.110 0.890 37 H 0.075 0.925 38 H 0.093 0.907 39 H 0.010 0.990 40 H 0.038 0.962 41 H -0.008 1.008 42 H 0.063 0.937 43 H 0.263 0.737 44 H 0.111 0.889 45 H 0.130 0.870 46 H 0.076 0.924 47 H 0.106 0.894 48 H 0.095 0.905 49 H 0.100 0.900 50 H 0.045 0.955 51 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.592 -8.569 11.355 25.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.054 3.946 3 H 0.097 0.903 4 O -0.382 6.382 5 C -0.095 4.095 6 C -0.068 4.068 7 N -0.183 5.183 8 N -0.211 5.211 9 C 0.001 3.999 10 N -0.187 5.187 11 C -0.098 4.098 12 C 0.132 3.868 13 H -0.015 1.015 14 C -0.159 4.159 15 C -0.559 4.559 16 H 0.095 0.905 17 C -0.188 4.188 18 N -0.562 5.562 19 Si 0.796 3.204 20 H -0.181 1.181 21 H -0.206 1.206 22 H -0.211 1.211 23 N -0.142 5.142 24 C -0.002 4.002 25 C 0.000 4.000 26 H 0.059 0.941 27 C -0.179 4.179 28 C -0.177 4.177 29 C -0.041 4.041 30 O -0.310 6.310 31 H 0.099 0.901 32 H 0.095 0.905 33 H 0.087 0.913 34 H 0.235 0.765 35 H 0.131 0.869 36 H 0.128 0.872 37 H 0.093 0.907 38 H 0.112 0.888 39 H 0.029 0.971 40 H 0.057 0.943 41 H 0.011 0.989 42 H 0.082 0.918 43 H 0.072 0.928 44 H 0.129 0.871 45 H 0.147 0.853 46 H 0.095 0.905 47 H 0.124 0.876 48 H 0.113 0.887 49 H 0.119 0.881 50 H 0.063 0.937 51 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -21.087 -7.025 10.637 24.641 hybrid contribution 1.241 -1.000 -0.445 1.655 sum -19.846 -8.025 10.192 23.710 Atomic orbital electron populations 1.22375 0.92725 1.04187 1.03594 1.21840 0.94834 0.95602 0.82363 0.90326 1.86665 1.77696 1.30000 1.43870 1.21022 0.81722 1.04731 1.02004 1.25197 0.96252 0.88594 0.96794 1.73803 0.98098 1.24393 1.22028 1.74506 1.10429 1.16197 1.19947 1.22676 0.87836 0.90976 0.98365 1.59190 0.99544 1.45893 1.14104 1.22283 1.00309 0.94323 0.92898 1.19027 0.90125 0.93117 0.84571 1.01467 1.21487 0.95756 0.98008 1.00656 1.21366 0.97950 1.41536 0.95005 0.90507 1.25823 1.02392 0.95883 0.94660 1.70081 1.35442 1.48702 1.01971 0.85307 0.78407 0.77677 0.79042 1.18060 1.20591 1.21086 1.46278 1.04638 1.21270 1.42014 1.22355 1.05186 0.79399 0.93268 1.23142 0.90746 0.95723 0.90436 0.94096 1.22912 0.99736 0.93919 1.01378 1.23098 0.98131 1.01251 0.95184 1.23809 1.00887 0.81725 0.97704 1.88917 1.50776 1.28246 1.63081 0.90078 0.90503 0.91301 0.76508 0.86866 0.87193 0.90677 0.88809 0.97117 0.94301 0.98936 0.91793 0.92813 0.87107 0.85267 0.90540 0.87572 0.88678 0.88144 0.93693 0.86901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.86 9.53 71.98 0.69 -1.17 16 2 C 0.11 2.08 3.57 30.59 0.11 2.19 16 3 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 4 O -0.57 -10.60 12.36 -148.98 -1.84 -12.44 16 5 C -0.06 -1.21 5.06 29.85 0.15 -1.05 16 6 C 0.20 6.99 7.09 137.64 0.98 7.97 16 7 N -0.34 -15.45 12.18 -49.54 -0.60 -16.05 16 8 N -0.37 -18.69 11.98 -58.01 -0.69 -19.39 16 9 C 0.36 16.15 5.12 260.11 1.33 17.48 16 10 N -0.46 -21.14 4.66 -710.99 -3.31 -24.45 16 11 C 0.05 2.05 9.29 127.69 1.19 3.23 16 12 C 0.24 12.95 1.96 44.17 0.09 13.04 16 13 H -0.03 -2.09 8.00 -2.39 -0.02 -2.11 16 14 C -0.10 -5.45 8.57 71.98 0.62 -4.83 16 15 C -0.52 -28.37 7.85 25.60 0.20 -28.17 16 16 H 0.08 3.96 6.42 -2.91 -0.02 3.94 16 17 C 0.01 0.63 5.30 84.66 0.45 1.08 16 18 N -0.92 -54.67 11.32 21.45 0.24 -54.43 16 19 Si 0.97 42.98 29.54 68.60 2.03 45.01 16 20 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 21 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 22 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 23 N -0.45 -15.80 2.79 -514.85 -1.43 -17.23 16 24 C 0.12 2.95 5.41 86.38 0.47 3.42 16 25 C 0.06 1.48 3.66 30.97 0.11 1.59 16 26 H 0.04 1.46 6.54 -2.39 -0.02 1.45 16 27 C -0.14 -2.26 6.64 31.59 0.21 -2.05 16 28 C -0.14 -1.60 7.16 31.90 0.23 -1.37 16 29 C 0.03 0.61 7.72 72.66 0.56 1.17 16 30 O -0.39 -9.86 10.45 -148.98 -1.56 -11.42 16 31 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.39 3.68 7.69 -74.05 -0.57 3.11 16 35 H 0.11 1.99 7.03 -2.39 -0.02 1.97 16 36 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 37 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 38 H 0.09 3.83 6.03 -2.39 -0.01 3.82 16 39 H 0.01 0.46 8.13 -2.39 -0.02 0.44 16 40 H 0.04 1.96 6.86 -2.39 -0.02 1.94 16 41 H -0.01 -0.47 7.22 -2.39 -0.02 -0.49 16 42 H 0.06 3.78 6.07 -2.39 -0.01 3.76 16 43 H 0.26 14.72 8.31 -92.70 -0.77 13.95 16 44 H 0.11 2.67 8.14 -2.39 -0.02 2.65 16 45 H 0.13 2.12 5.37 -2.39 -0.01 2.10 16 46 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 47 H 0.11 1.16 7.70 -2.39 -0.02 1.14 16 48 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 49 H 0.10 0.72 8.14 -2.38 -0.02 0.70 16 50 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 51 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -80.13 399.58 0.56 -79.57 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: 0.36 Total: 18.31 kcal Atomic # 6 Polarization: 5.14 SS G_CDS: 7.37 Total: 12.51 kcal Atomic # 7 Polarization: -125.75 SS G_CDS: -5.80 Total: -131.55 kcal Atomic # 8 Polarization: -20.46 SS G_CDS: -3.40 Total: -23.85 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Total: -80.13 0.56 -79.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649197746.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.864 kcal (2) G-P(sol) polarization free energy of solvation -80.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds