Wall clock time and date at job start Tue Mar 31 2020 22:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42907 * 113.99847 * 2 1 4 4 C 1.52998 * 109.46755 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.50954 * 305.08396 * 4 3 2 6 6 C 1.53109 * 109.50376 * 184.99924 * 4 3 2 7 7 N 1.47009 * 109.25673 * 183.21440 * 6 4 3 8 8 C 1.38583 * 111.00162 * 182.39312 * 7 6 4 9 9 N 1.31218 * 126.46916 * 297.59980 * 8 7 6 10 10 N 1.28527 * 109.85487 * 179.72519 * 9 8 7 11 11 C 1.30294 * 110.05628 * 0.44865 * 10 9 8 12 12 C 1.50703 * 126.34617 * 179.81658 * 11 10 9 13 13 C 1.53000 * 109.46741 * 120.75163 * 12 11 10 14 14 C 1.52994 * 109.47260 * 0.75227 * 12 11 10 15 15 C 1.50701 * 109.47078 * 240.75084 * 12 11 10 16 16 H 1.07997 * 119.99996 * 0.02562 * 15 12 11 17 17 C 1.37875 * 119.99450 * 179.72765 * 15 12 11 18 18 N 1.31512 * 120.00722 * 0.02562 * 17 15 12 19 19 Si 1.86810 * 119.99803 * 179.97438 * 17 15 12 20 20 H 1.48497 * 109.47056 * 59.99844 * 19 17 15 21 21 H 1.48495 * 109.47178 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.46808 * 300.00097 * 19 17 15 23 23 N 1.36453 * 126.47257 * 117.59120 * 8 7 6 24 24 C 1.46496 * 127.13799 * 0.02562 * 23 8 7 25 25 C 1.47018 * 110.75410 * 58.61677 * 7 6 4 26 26 C 1.53099 * 109.25891 * 301.38145 * 25 7 6 27 27 H 1.09000 * 109.50660 * 176.78053 * 26 25 7 28 28 C 1.52996 * 109.54117 * 296.89495 * 26 25 7 29 29 O 1.43017 * 109.51070 * 65.21837 * 4 3 2 30 30 H 1.09007 * 109.47056 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47563 * 299.99987 * 1 2 3 32 32 H 1.09002 * 109.47575 * 60.00015 * 1 2 3 33 33 H 1.08996 * 109.46995 * 59.99726 * 3 2 1 34 34 H 1.09003 * 109.46844 * 300.00017 * 3 2 1 35 35 H 1.08997 * 109.50568 * 63.28161 * 6 4 3 36 36 H 1.09000 * 109.50303 * 303.14915 * 6 4 3 37 37 H 1.08995 * 109.47397 * 186.65172 * 13 12 11 38 38 H 1.08999 * 109.47152 * 306.65341 * 13 12 11 39 39 H 1.08998 * 109.47009 * 66.64896 * 13 12 11 40 40 H 1.08996 * 109.47496 * 299.99839 * 14 12 11 41 41 H 1.09007 * 109.46953 * 59.99769 * 14 12 11 42 42 H 1.08998 * 109.47574 * 179.97438 * 14 12 11 43 43 H 0.97001 * 120.00553 * 180.02562 * 18 17 15 44 44 H 1.09001 * 109.47255 * 264.81118 * 24 23 8 45 45 H 1.08998 * 109.47089 * 24.81709 * 24 23 8 46 46 H 1.09002 * 109.46708 * 144.81358 * 24 23 8 47 47 H 1.09002 * 109.50591 * 61.31839 * 25 7 6 48 48 H 1.08995 * 109.50643 * 181.44837 * 25 7 6 49 49 H 1.09003 * 109.46835 * 179.80721 * 28 26 25 50 50 H 1.09004 * 109.46932 * 299.80201 * 28 26 25 51 51 H 1.08994 * 109.47566 * 59.80141 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5353 1.1847 -0.0006 5 1 3.8519 0.5671 0.8399 6 6 4.1586 2.5775 0.1251 7 7 5.6221 2.4628 0.0465 8 6 6.2267 3.6989 0.2102 9 7 6.0890 4.7441 -0.5711 10 7 6.7883 5.7228 -0.1183 11 6 7.4159 5.3602 0.9644 12 6 8.3388 6.2177 1.7915 13 6 7.7969 6.3205 3.2187 14 6 8.4237 7.6159 1.1763 15 6 9.7116 5.5967 1.8189 16 1 9.8973 4.6736 1.2900 17 6 10.7319 6.2102 2.5142 18 7 10.5071 7.3371 3.1539 19 14 12.4335 5.4401 2.5489 20 1 12.9569 5.3336 1.1633 21 1 13.3447 6.2890 3.3578 22 1 12.3517 4.0859 3.1525 23 7 7.0775 4.0591 1.2144 24 6 7.5340 3.2249 2.3287 25 6 6.0285 1.8414 -1.2224 26 6 5.3866 0.4560 -1.3347 27 1 5.6388 0.0151 -2.2991 28 6 5.9071 -0.4418 -0.2105 29 8 3.9664 0.5839 -1.2248 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.6885 1.8464 0.8899 34 1 1.6885 1.8464 -0.8900 35 1 3.8788 3.0163 1.0829 36 1 3.7991 3.2116 -0.6854 37 1 8.3966 7.0334 3.7846 38 1 6.7611 6.6587 3.1905 39 1 7.8469 5.3427 3.6976 40 1 8.8097 7.5428 0.1596 41 1 7.4307 8.0651 1.1565 42 1 9.0908 8.2363 1.7747 43 1 11.2251 7.7689 3.6428 44 1 6.9022 3.4033 3.1988 45 1 7.4732 2.1743 2.0447 46 1 8.5664 3.4764 2.5716 47 1 5.6989 2.4638 -2.0544 48 1 7.1136 1.7429 -1.2483 49 1 5.4468 -1.4267 -0.2895 50 1 6.9896 -0.5388 -0.2948 51 1 5.6560 0.0004 0.7535 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001650278280.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:02:11 Heat of formation + Delta-G solvation = 1.608344 kcal Electronic energy + Delta-G solvation = -31404.999206 eV Core-core repulsion = 27341.710920 eV Total energy + Delta-G solvation = -4063.288286 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.32373 -40.13945 -37.91313 -36.14120 -35.43723 -33.97497 -33.08880 -31.51171 -30.25081 -28.17993 -27.42678 -27.01216 -26.04258 -25.72964 -25.36338 -24.57475 -22.86095 -22.06092 -20.55670 -19.63873 -18.96383 -17.28451 -17.02511 -16.71955 -16.54009 -15.89466 -15.61690 -15.34892 -15.31313 -15.03397 -14.64760 -14.54564 -14.32333 -14.13908 -13.47652 -13.09795 -12.89328 -12.62371 -12.57098 -12.39611 -12.13582 -11.92257 -11.84586 -11.69696 -11.47383 -11.38330 -11.33093 -11.16271 -11.00616 -10.83862 -10.64428 -10.55389 -10.38220 -10.26136 -9.95763 -9.89024 -9.81925 -9.66003 -9.40877 -9.12467 -8.65113 -8.52066 -8.14237 -6.18140 -4.30371 2.39121 2.72566 3.18570 3.25227 3.27443 3.40057 3.51497 3.59886 3.98745 4.26067 4.60385 4.73192 4.76417 4.87075 4.95867 5.02640 5.07313 5.08039 5.14170 5.17949 5.22588 5.26636 5.36626 5.38201 5.42139 5.49896 5.63552 5.65433 5.70446 5.78132 5.86936 5.98701 6.06130 6.09879 6.16767 6.55399 6.60338 6.70231 6.71393 6.78079 6.84961 7.00428 7.04766 7.17778 7.26112 7.46994 7.52988 7.73830 7.85631 7.99171 8.16255 8.66129 9.35470 9.48358 10.83342 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.019487 B = 0.002901 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.522838 B = 9648.114126 C =10181.954286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.382 6.382 3 C 0.071 3.929 4 C 0.096 3.904 5 H 0.080 0.920 6 C 0.039 3.961 7 N -0.450 5.450 8 C 0.296 3.704 9 N -0.316 5.316 10 N -0.313 5.313 11 C 0.252 3.748 12 C 0.145 3.855 13 C -0.129 4.129 14 C -0.117 4.117 15 C -0.516 4.516 16 H 0.054 0.946 17 C 0.074 3.926 18 N -0.878 5.878 19 Si 0.896 3.104 20 H -0.276 1.276 21 H -0.285 1.285 22 H -0.276 1.276 23 N -0.458 5.458 24 C 0.081 3.919 25 C 0.035 3.965 26 C 0.092 3.908 27 H 0.111 0.889 28 C -0.176 4.176 29 O -0.365 6.365 30 H 0.086 0.914 31 H 0.040 0.960 32 H 0.041 0.959 33 H 0.066 0.934 34 H 0.060 0.940 35 H 0.086 0.914 36 H 0.063 0.937 37 H 0.093 0.907 38 H 0.011 0.989 39 H 0.032 0.968 40 H 0.035 0.965 41 H 0.018 0.982 42 H 0.089 0.911 43 H 0.265 0.735 44 H 0.069 0.931 45 H 0.080 0.920 46 H 0.108 0.892 47 H 0.061 0.939 48 H 0.087 0.913 49 H 0.060 0.940 50 H 0.065 0.935 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.311 -13.830 -1.865 19.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.300 6.300 3 C -0.007 4.007 4 C 0.038 3.962 5 H 0.098 0.902 6 C -0.089 4.089 7 N -0.176 5.176 8 C -0.060 4.060 9 N -0.160 5.160 10 N -0.153 5.153 11 C -0.015 4.015 12 C 0.142 3.858 13 C -0.188 4.188 14 C -0.176 4.176 15 C -0.554 4.554 16 H 0.073 0.927 17 C -0.129 4.129 18 N -0.515 5.515 19 Si 0.723 3.277 20 H -0.202 1.202 21 H -0.210 1.210 22 H -0.202 1.202 23 N -0.149 5.149 24 C -0.062 4.062 25 C -0.093 4.093 26 C 0.034 3.966 27 H 0.128 0.872 28 C -0.234 4.234 29 O -0.284 6.284 30 H 0.104 0.896 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.105 0.895 36 H 0.081 0.919 37 H 0.112 0.888 38 H 0.031 0.969 39 H 0.051 0.949 40 H 0.054 0.946 41 H 0.037 0.963 42 H 0.108 0.892 43 H 0.075 0.925 44 H 0.088 0.912 45 H 0.098 0.902 46 H 0.126 0.874 47 H 0.080 0.920 48 H 0.106 0.894 49 H 0.079 0.921 50 H 0.084 0.916 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -13.547 -13.385 -2.636 19.226 hybrid contribution 1.144 -0.489 0.673 1.414 sum -12.404 -13.874 -1.963 18.713 Atomic orbital electron populations 1.22749 0.81016 1.02784 0.99983 1.87926 1.19558 1.27154 1.95411 1.22459 0.91528 0.85424 1.01259 1.22071 0.92371 0.92674 0.89102 0.90246 1.22676 0.85744 0.97117 1.03358 1.58610 1.07265 1.16026 1.35684 1.21957 0.99563 0.92998 0.91505 1.74402 1.20226 0.97383 1.24012 1.74043 1.10606 1.20732 1.09877 1.26188 0.97596 0.82098 0.95600 1.16941 0.89483 0.90397 0.89005 1.21881 0.97261 1.01415 0.98230 1.21625 0.99122 0.96809 1.00009 1.20799 0.93023 1.08865 1.32749 0.92741 1.24834 0.98641 0.94690 0.94717 1.69798 1.32861 1.16651 1.32201 0.86592 0.83666 0.79146 0.78279 1.20184 1.21010 1.20200 1.46073 1.34820 1.12466 1.21540 1.22090 1.03082 0.94141 0.86885 1.22868 1.01452 0.95500 0.89507 1.22310 0.80582 0.93521 1.00156 0.87180 1.22299 1.01552 0.99620 0.99895 1.88098 1.21375 1.81203 1.37723 0.89584 0.94112 0.93996 0.91587 0.92173 0.89530 0.91899 0.88849 0.96941 0.94901 0.94581 0.96320 0.89229 0.92472 0.91239 0.90177 0.87402 0.92020 0.89430 0.92060 0.91605 0.91148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.35 16 2 O -0.38 -4.21 10.67 -39.72 -0.42 -4.63 16 3 C 0.07 0.71 5.60 37.16 0.21 0.92 16 4 C 0.10 1.10 2.69 -26.68 -0.07 1.03 16 5 H 0.08 0.91 6.50 -51.93 -0.34 0.57 16 6 C 0.04 0.51 4.86 -3.71 -0.02 0.49 16 7 N -0.45 -6.63 4.08 -174.20 -0.71 -7.34 16 8 C 0.30 5.56 6.46 -318.87 -2.06 3.50 16 9 N -0.32 -6.88 12.18 30.32 0.37 -6.51 16 10 N -0.31 -7.48 11.50 32.99 0.38 -7.10 16 11 C 0.25 5.74 6.28 -154.02 -0.97 4.78 16 12 C 0.14 3.41 0.53 -156.81 -0.08 3.33 16 13 C -0.13 -2.86 7.96 37.16 0.30 -2.56 16 14 C -0.12 -2.84 7.75 37.15 0.29 -2.55 16 15 C -0.52 -12.81 6.56 -34.44 -0.23 -13.03 16 16 H 0.05 1.38 7.41 -52.49 -0.39 0.99 16 17 C 0.07 1.85 5.15 -17.82 -0.09 1.75 16 18 N -0.88 -22.24 9.43 55.43 0.52 -21.72 16 19 Si 0.90 19.62 29.54 -169.99 -5.02 14.60 16 20 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 21 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 22 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 23 N -0.46 -8.96 3.21 -121.46 -0.39 -9.35 16 24 C 0.08 1.30 9.61 59.84 0.57 1.87 16 25 C 0.03 0.46 4.98 -3.71 -0.02 0.45 16 26 C 0.09 1.03 3.92 -26.68 -0.10 0.92 16 27 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 28 C -0.18 -1.77 8.89 37.16 0.33 -1.44 16 29 O -0.37 -4.63 10.25 -39.72 -0.41 -5.04 16 30 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.09 2.22 6.29 -51.93 -0.33 1.89 16 38 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 39 H 0.03 0.67 6.39 -51.93 -0.33 0.34 16 40 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16 41 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.09 2.26 6.05 -51.93 -0.31 1.95 16 43 H 0.26 6.48 8.31 -40.82 -0.34 6.14 16 44 H 0.07 1.00 7.82 -51.93 -0.41 0.60 16 45 H 0.08 1.09 8.11 -51.93 -0.42 0.67 16 46 H 0.11 1.89 6.22 -51.93 -0.32 1.57 16 47 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 48 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 49 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 50 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 51 H 0.07 0.77 6.13 -51.93 -0.32 0.45 16 LS Contribution 395.76 15.07 5.96 5.96 Total: -1.00 -29.40 395.76 -9.19 -38.59 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -8.64 Total: 1.74 kcal Atomic # 6 Polarization: 1.63 SS G_CDS: -0.83 Total: 0.80 kcal Atomic # 7 Polarization: -52.19 SS G_CDS: 0.17 Total: -52.02 kcal Atomic # 8 Polarization: -8.84 SS G_CDS: -0.83 Total: -9.67 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -5.02 Total: 14.60 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -29.40 -9.19 -38.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650278280.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.199 kcal (2) G-P(sol) polarization free energy of solvation -29.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds