Wall clock time and date at job start Tue Mar 31 2020 22:02:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42907 * 113.99847 * 2 1 4 4 C 1.52998 * 109.46755 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.50954 * 305.08396 * 4 3 2 6 6 C 1.53109 * 109.50376 * 184.99924 * 4 3 2 7 7 N 1.47009 * 109.25673 * 183.21440 * 6 4 3 8 8 C 1.38583 * 111.00162 * 182.39312 * 7 6 4 9 9 N 1.31218 * 126.46916 * 297.59980 * 8 7 6 10 10 N 1.28527 * 109.85487 * 179.72519 * 9 8 7 11 11 C 1.30294 * 110.05628 * 0.44865 * 10 9 8 12 12 C 1.50703 * 126.34617 * 179.81658 * 11 10 9 13 13 C 1.53000 * 109.46741 * 120.75163 * 12 11 10 14 14 C 1.52994 * 109.47260 * 0.75227 * 12 11 10 15 15 C 1.50701 * 109.47078 * 240.75084 * 12 11 10 16 16 H 1.07997 * 119.99996 * 0.02562 * 15 12 11 17 17 C 1.37875 * 119.99450 * 179.72765 * 15 12 11 18 18 N 1.31512 * 120.00722 * 0.02562 * 17 15 12 19 19 Si 1.86810 * 119.99803 * 179.97438 * 17 15 12 20 20 H 1.48497 * 109.47056 * 59.99844 * 19 17 15 21 21 H 1.48495 * 109.47178 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.46808 * 300.00097 * 19 17 15 23 23 N 1.36453 * 126.47257 * 117.59120 * 8 7 6 24 24 C 1.46496 * 127.13799 * 0.02562 * 23 8 7 25 25 C 1.47018 * 110.75410 * 58.61677 * 7 6 4 26 26 C 1.53099 * 109.25891 * 301.38145 * 25 7 6 27 27 H 1.09000 * 109.50660 * 176.78053 * 26 25 7 28 28 C 1.52996 * 109.54117 * 296.89495 * 26 25 7 29 29 O 1.43017 * 109.51070 * 65.21837 * 4 3 2 30 30 H 1.09007 * 109.47056 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47563 * 299.99987 * 1 2 3 32 32 H 1.09002 * 109.47575 * 60.00015 * 1 2 3 33 33 H 1.08996 * 109.46995 * 59.99726 * 3 2 1 34 34 H 1.09003 * 109.46844 * 300.00017 * 3 2 1 35 35 H 1.08997 * 109.50568 * 63.28161 * 6 4 3 36 36 H 1.09000 * 109.50303 * 303.14915 * 6 4 3 37 37 H 1.08995 * 109.47397 * 186.65172 * 13 12 11 38 38 H 1.08999 * 109.47152 * 306.65341 * 13 12 11 39 39 H 1.08998 * 109.47009 * 66.64896 * 13 12 11 40 40 H 1.08996 * 109.47496 * 299.99839 * 14 12 11 41 41 H 1.09007 * 109.46953 * 59.99769 * 14 12 11 42 42 H 1.08998 * 109.47574 * 179.97438 * 14 12 11 43 43 H 0.97001 * 120.00553 * 180.02562 * 18 17 15 44 44 H 1.09001 * 109.47255 * 264.81118 * 24 23 8 45 45 H 1.08998 * 109.47089 * 24.81709 * 24 23 8 46 46 H 1.09002 * 109.46708 * 144.81358 * 24 23 8 47 47 H 1.09002 * 109.50591 * 61.31839 * 25 7 6 48 48 H 1.08995 * 109.50643 * 181.44837 * 25 7 6 49 49 H 1.09003 * 109.46835 * 179.80721 * 28 26 25 50 50 H 1.09004 * 109.46932 * 299.80201 * 28 26 25 51 51 H 1.08994 * 109.47566 * 59.80141 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5353 1.1847 -0.0006 5 1 3.8519 0.5671 0.8399 6 6 4.1586 2.5775 0.1251 7 7 5.6221 2.4628 0.0465 8 6 6.2267 3.6989 0.2102 9 7 6.0890 4.7441 -0.5711 10 7 6.7883 5.7228 -0.1183 11 6 7.4159 5.3602 0.9644 12 6 8.3388 6.2177 1.7915 13 6 7.7969 6.3205 3.2187 14 6 8.4237 7.6159 1.1763 15 6 9.7116 5.5967 1.8189 16 1 9.8973 4.6736 1.2900 17 6 10.7319 6.2102 2.5142 18 7 10.5071 7.3371 3.1539 19 14 12.4335 5.4401 2.5489 20 1 12.9569 5.3336 1.1633 21 1 13.3447 6.2890 3.3578 22 1 12.3517 4.0859 3.1525 23 7 7.0775 4.0591 1.2144 24 6 7.5340 3.2249 2.3287 25 6 6.0285 1.8414 -1.2224 26 6 5.3866 0.4560 -1.3347 27 1 5.6388 0.0151 -2.2991 28 6 5.9071 -0.4418 -0.2105 29 8 3.9664 0.5839 -1.2248 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.6885 1.8464 0.8899 34 1 1.6885 1.8464 -0.8900 35 1 3.8788 3.0163 1.0829 36 1 3.7991 3.2116 -0.6854 37 1 8.3966 7.0334 3.7846 38 1 6.7611 6.6587 3.1905 39 1 7.8469 5.3427 3.6976 40 1 8.8097 7.5428 0.1596 41 1 7.4307 8.0651 1.1565 42 1 9.0908 8.2363 1.7747 43 1 11.2251 7.7689 3.6428 44 1 6.9022 3.4033 3.1988 45 1 7.4732 2.1743 2.0447 46 1 8.5664 3.4764 2.5716 47 1 5.6989 2.4638 -2.0544 48 1 7.1136 1.7429 -1.2483 49 1 5.4468 -1.4267 -0.2895 50 1 6.9896 -0.5388 -0.2948 51 1 5.6560 0.0004 0.7535 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001650278280.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:02:10 Heat of formation + Delta-G solvation = -14.596694 kcal Electronic energy + Delta-G solvation = -31405.701909 eV Core-core repulsion = 27341.710920 eV Total energy + Delta-G solvation = -4063.990989 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.92163 -41.16407 -38.68633 -37.72953 -36.82076 -35.52597 -33.98806 -33.35325 -31.29402 -29.61965 -28.44112 -28.22196 -27.61499 -27.29192 -26.88241 -25.62901 -23.79400 -23.76349 -21.91893 -20.98132 -20.37365 -18.64888 -18.21410 -17.94645 -17.54522 -17.21434 -16.95964 -16.81943 -16.29599 -16.19841 -15.78860 -15.72535 -15.45293 -15.12657 -15.01044 -14.75940 -14.13564 -13.90192 -13.76784 -13.42110 -13.30283 -13.27842 -13.00778 -12.94974 -12.83435 -12.76633 -12.60935 -12.56343 -12.42299 -12.31364 -12.24642 -12.11403 -11.94896 -11.71800 -11.54804 -11.37821 -11.04922 -10.88336 -10.77082 -10.63578 -10.44515 -9.92692 -9.83399 -8.07713 -6.25279 0.84668 1.32710 1.44707 1.48494 1.53568 1.89167 2.43385 2.48310 2.60864 2.90194 3.16737 3.61617 3.67591 3.80672 3.92284 3.94081 3.99314 4.08149 4.20832 4.22988 4.28799 4.36928 4.39931 4.42740 4.48875 4.57622 4.58214 4.60367 4.66377 4.71020 4.75961 4.84998 4.89034 4.92293 4.94042 4.96948 5.06512 5.11963 5.21752 5.34435 5.35159 5.48035 5.50812 5.55914 5.67030 5.95759 6.05317 6.10065 6.21621 6.25102 6.28390 6.73073 7.42461 7.82985 8.92667 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.019487 B = 0.002901 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.522838 B = 9648.114126 C =10181.954286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.405 6.405 3 C 0.071 3.929 4 C 0.103 3.897 5 H 0.085 0.915 6 C 0.042 3.958 7 N -0.441 5.441 8 C 0.319 3.681 9 N -0.347 5.347 10 N -0.344 5.344 11 C 0.234 3.766 12 C 0.142 3.858 13 C -0.117 4.117 14 C -0.107 4.107 15 C -0.523 4.523 16 H 0.045 0.955 17 C 0.039 3.961 18 N -0.895 5.895 19 Si 0.949 3.051 20 H -0.285 1.285 21 H -0.283 1.283 22 H -0.265 1.265 23 N -0.457 5.457 24 C 0.078 3.922 25 C 0.035 3.965 26 C 0.097 3.903 27 H 0.130 0.870 28 C -0.170 4.170 29 O -0.378 6.378 30 H 0.097 0.903 31 H 0.053 0.947 32 H 0.046 0.954 33 H 0.085 0.915 34 H 0.058 0.942 35 H 0.093 0.907 36 H 0.048 0.952 37 H 0.076 0.924 38 H 0.017 0.983 39 H 0.046 0.954 40 H 0.018 0.982 41 H 0.020 0.980 42 H 0.077 0.923 43 H 0.266 0.734 44 H 0.088 0.912 45 H 0.107 0.893 46 H 0.093 0.907 47 H 0.043 0.957 48 H 0.086 0.914 49 H 0.069 0.931 50 H 0.074 0.926 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.949 -16.237 -1.123 21.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.324 6.324 3 C -0.006 4.006 4 C 0.045 3.955 5 H 0.103 0.897 6 C -0.086 4.086 7 N -0.167 5.167 8 C -0.038 4.038 9 N -0.191 5.191 10 N -0.184 5.184 11 C -0.034 4.034 12 C 0.139 3.861 13 C -0.176 4.176 14 C -0.165 4.165 15 C -0.562 4.562 16 H 0.064 0.936 17 C -0.162 4.162 18 N -0.532 5.532 19 Si 0.775 3.225 20 H -0.211 1.211 21 H -0.208 1.208 22 H -0.190 1.190 23 N -0.148 5.148 24 C -0.064 4.064 25 C -0.092 4.092 26 C 0.039 3.961 27 H 0.147 0.853 28 C -0.227 4.227 29 O -0.298 6.298 30 H 0.116 0.884 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.103 0.897 34 H 0.076 0.924 35 H 0.111 0.889 36 H 0.066 0.934 37 H 0.094 0.906 38 H 0.036 0.964 39 H 0.065 0.935 40 H 0.037 0.963 41 H 0.039 0.961 42 H 0.095 0.905 43 H 0.076 0.924 44 H 0.106 0.894 45 H 0.126 0.874 46 H 0.112 0.888 47 H 0.062 0.938 48 H 0.104 0.896 49 H 0.088 0.912 50 H 0.093 0.907 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -14.199 -15.806 -1.885 21.330 hybrid contribution 1.268 0.207 0.394 1.344 sum -12.930 -15.599 -1.491 20.316 Atomic orbital electron populations 1.22940 0.79322 1.03926 1.00874 1.87876 1.21460 1.27495 1.95604 1.22472 0.90494 0.85496 1.02134 1.22065 0.93297 0.91226 0.88920 0.89677 1.22723 0.84450 0.98328 1.03126 1.58886 1.08141 1.13402 1.36287 1.22345 0.97928 0.93482 0.90048 1.74336 1.21301 0.98126 1.25322 1.73945 1.11525 1.22217 1.10690 1.25898 0.98250 0.83496 0.95783 1.16863 0.89531 0.89877 0.89790 1.21717 0.97015 1.01669 0.97170 1.21491 0.98714 0.97627 0.98691 1.20873 0.93901 1.08668 1.32736 0.93645 1.25402 1.01290 0.95059 0.94483 1.69891 1.33595 1.17292 1.32455 0.85758 0.80147 0.78960 0.77638 1.21085 1.20808 1.18998 1.46216 1.34502 1.11778 1.22286 1.22298 1.02478 0.95000 0.86577 1.22938 1.01639 0.96562 0.88100 1.22418 0.79833 0.92065 1.01792 0.85285 1.22247 1.02156 0.99547 0.98787 1.88099 1.22103 1.81163 1.38391 0.88408 0.92799 0.93515 0.89680 0.92371 0.88894 0.93383 0.90559 0.96404 0.93542 0.96301 0.96051 0.90480 0.92447 0.89356 0.87440 0.88848 0.93813 0.89552 0.91198 0.90692 0.91855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 113.37 1.25 1.57 16 2 O -0.41 -8.09 10.67 -144.68 -1.54 -9.64 16 3 C 0.07 1.29 5.60 71.98 0.40 1.70 16 4 C 0.10 2.16 2.69 30.63 0.08 2.25 16 5 H 0.09 1.72 6.50 -2.39 -0.02 1.71 16 6 C 0.04 1.03 4.86 86.32 0.42 1.45 16 7 N -0.44 -12.35 4.08 -705.05 -2.88 -15.23 16 8 C 0.32 11.75 6.46 260.11 1.68 13.43 16 9 N -0.35 -15.24 12.18 -58.00 -0.71 -15.94 16 10 N -0.34 -16.72 11.50 -49.54 -0.57 -17.29 16 11 C 0.23 10.71 6.28 137.64 0.86 11.57 16 12 C 0.14 6.75 0.53 -53.67 -0.03 6.72 16 13 C -0.12 -5.14 7.96 71.98 0.57 -4.57 16 14 C -0.11 -5.30 7.75 71.98 0.56 -4.74 16 15 C -0.52 -26.00 6.56 25.60 0.17 -25.83 16 16 H 0.05 2.30 7.41 -2.91 -0.02 2.28 16 17 C 0.04 1.93 5.15 84.65 0.44 2.37 16 18 N -0.90 -45.41 9.43 21.45 0.20 -45.20 16 19 Si 0.95 39.83 29.54 68.60 2.03 41.85 16 20 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 21 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 22 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 23 N -0.46 -17.47 3.21 -538.19 -1.73 -19.20 16 24 C 0.08 2.34 9.61 127.77 1.23 3.57 16 25 C 0.04 0.90 4.98 86.31 0.43 1.33 16 26 C 0.10 1.95 3.92 30.63 0.12 2.07 16 27 H 0.13 2.13 8.14 -2.39 -0.02 2.11 16 28 C -0.17 -2.94 8.89 71.98 0.64 -2.30 16 29 O -0.38 -8.88 10.25 -144.68 -1.48 -10.37 16 30 H 0.10 0.99 8.14 -2.38 -0.02 0.97 16 31 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 36 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.08 3.62 6.29 -2.39 -0.02 3.60 16 38 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.05 1.85 6.39 -2.39 -0.02 1.84 16 40 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.02 0.99 8.14 -2.38 -0.02 0.97 16 42 H 0.08 3.98 6.05 -2.39 -0.01 3.97 16 43 H 0.27 12.96 8.31 -92.71 -0.77 12.19 16 44 H 0.09 2.32 7.82 -2.39 -0.02 2.30 16 45 H 0.11 2.60 8.11 -2.39 -0.02 2.58 16 46 H 0.09 3.13 6.22 -2.39 -0.01 3.12 16 47 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 48 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 49 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 50 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 51 H 0.06 1.19 6.13 -2.39 -0.01 1.18 16 Total: -1.00 -63.05 395.76 3.05 -60.01 By element: Atomic # 1 Polarization: 19.52 SS G_CDS: 0.91 Total: 20.43 kcal Atomic # 6 Polarization: 1.76 SS G_CDS: 8.82 Total: 10.58 kcal Atomic # 7 Polarization: -107.18 SS G_CDS: -5.68 Total: -112.86 kcal Atomic # 8 Polarization: -16.98 SS G_CDS: -3.03 Total: -20.01 kcal Atomic # 14 Polarization: 39.83 SS G_CDS: 2.03 Total: 41.85 kcal Total: -63.05 3.05 -60.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650278280.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.408 kcal (2) G-P(sol) polarization free energy of solvation -63.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds