Wall clock time and date at job start Tue Mar 31 2020 22:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42907 * 113.99815 * 2 1 4 4 C 1.52999 * 109.47197 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.47136 * 185.08719 * 4 3 2 6 6 C 1.36458 * 127.13736 * 274.75769 * 5 4 3 7 7 N 1.38580 * 126.46855 * 0.03894 * 6 5 4 8 8 C 1.47017 * 111.00117 * 290.51019 * 7 6 5 9 9 C 1.53101 * 109.26094 * 177.61340 * 8 7 6 10 10 O 1.43015 * 109.25787 * 56.84274 * 9 8 7 11 11 C 1.43015 * 113.74180 * 301.33640 * 10 9 8 12 12 H 1.08995 * 109.50444 * 298.73389 * 11 10 9 13 13 C 1.53005 * 109.50414 * 178.64905 * 11 10 9 14 14 C 1.47016 * 110.99994 * 166.87859 * 7 6 5 15 15 N 1.31211 * 107.05467 * 179.77758 * 6 5 4 16 16 N 1.28534 * 109.86185 * 0.22261 * 15 6 5 17 17 C 1.30298 * 110.04933 * 0.02562 * 16 15 6 18 18 C 1.50695 * 126.34173 * 180.02562 * 17 16 15 19 19 C 1.53004 * 109.46902 * 126.36831 * 18 17 16 20 20 C 1.53001 * 109.47168 * 246.36978 * 18 17 16 21 21 C 1.50696 * 109.47310 * 6.37238 * 18 17 16 22 22 H 1.07998 * 120.00403 * 0.98572 * 21 18 17 23 23 C 1.37887 * 120.00036 * 180.98970 * 21 18 17 24 24 N 1.31512 * 119.99785 * 191.18919 * 23 21 18 25 25 Si 1.86800 * 119.99757 * 11.19418 * 23 21 18 26 26 H 1.48491 * 109.47216 * 94.15350 * 25 23 21 27 27 H 1.48499 * 109.46653 * 214.15283 * 25 23 21 28 28 H 1.48497 * 109.47305 * 334.15077 * 25 23 21 29 29 H 1.09000 * 109.46810 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47258 * 300.00088 * 1 2 3 31 31 H 1.09004 * 109.47263 * 59.99780 * 1 2 3 32 32 H 1.09003 * 109.47087 * 59.99775 * 3 2 1 33 33 H 1.08998 * 109.47321 * 299.99927 * 3 2 1 34 34 H 1.08998 * 109.47079 * 65.08822 * 4 3 2 35 35 H 1.09005 * 109.47125 * 305.08763 * 4 3 2 36 36 H 1.08996 * 109.50428 * 57.67532 * 8 7 6 37 37 H 1.09002 * 109.50645 * 297.54452 * 8 7 6 38 38 H 1.09002 * 109.49835 * 296.91260 * 9 8 7 39 39 H 1.08997 * 109.50768 * 176.78341 * 9 8 7 40 40 H 1.08993 * 109.47070 * 60.08281 * 13 11 10 41 41 H 1.09000 * 109.46750 * 180.08772 * 13 11 10 42 42 H 1.09000 * 109.46779 * 300.08129 * 13 11 10 43 43 H 1.09004 * 109.50869 * 62.45099 * 14 7 6 44 44 H 1.09005 * 109.50553 * 302.32888 * 14 7 6 45 45 H 1.09005 * 109.46837 * 74.36756 * 19 18 17 46 46 H 1.09006 * 109.47167 * 194.35834 * 19 18 17 47 47 H 1.08994 * 109.47644 * 314.36425 * 19 18 17 48 48 H 1.09000 * 109.47404 * 52.50821 * 20 18 17 49 49 H 1.09001 * 109.47180 * 172.50783 * 20 18 17 50 50 H 1.09003 * 109.47226 * 292.50653 * 20 18 17 51 51 H 0.96997 * 119.99460 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 7 4.1307 2.5177 0.1231 6 6 4.3911 3.3995 -0.8852 7 7 4.1405 3.2055 -2.2343 8 6 5.0378 2.1851 -2.7954 9 6 4.6879 1.9600 -4.2688 10 8 4.7763 3.2034 -4.9699 11 6 3.9151 4.2200 -4.4501 12 1 2.8778 3.8955 -4.5329 13 6 4.1114 5.5119 -5.2460 14 6 4.2572 4.4679 -2.9787 15 7 4.9182 4.4680 -0.3355 16 7 5.0057 4.3066 0.9367 17 6 4.5438 3.1350 1.2711 18 6 4.4717 2.5684 2.6656 19 6 3.0403 2.1137 2.9579 20 6 5.4199 1.3731 2.7801 21 6 4.8754 3.6268 3.6595 22 1 5.1407 4.6161 3.3170 23 6 4.9060 3.3322 5.0062 24 7 5.0409 4.2987 5.8877 25 14 4.7561 1.5603 5.5782 26 1 6.1119 0.9839 5.7646 27 1 4.0184 1.5168 6.8662 28 1 4.0189 0.7716 4.5586 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 1.6885 1.8465 0.8900 33 1 1.6886 1.8465 -0.8900 34 1 3.8638 0.7244 -0.9312 35 1 3.8506 0.5674 0.8418 36 1 4.9164 1.2517 -2.2458 37 1 6.0706 2.5243 -2.7144 38 1 3.6731 1.5698 -4.3463 39 1 5.3872 1.2462 -4.7041 40 1 3.8694 5.3335 -6.2937 41 1 3.4559 6.2867 -4.8484 42 1 5.1488 5.8358 -5.1627 43 1 5.2775 4.8436 -2.9005 44 1 3.5660 5.2010 -2.5628 45 1 2.8361 1.1880 2.4199 46 1 2.9242 1.9448 4.0286 47 1 2.3409 2.8843 2.6337 48 1 6.4148 1.6650 2.4438 49 1 5.4689 1.0463 3.8188 50 1 5.0516 0.5563 2.1592 51 1 5.0621 4.0914 6.8351 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001650407200.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:02:54 Heat of formation + Delta-G solvation = 29.841757 kcal Electronic energy + Delta-G solvation = -32033.287032 eV Core-core repulsion = 27971.223039 eV Total energy + Delta-G solvation = -4062.063993 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.60638 -39.85415 -38.19105 -36.51186 -35.85855 -34.54648 -33.05392 -31.71739 -29.86458 -29.68555 -27.99818 -26.63932 -26.53107 -25.99070 -24.93184 -23.84423 -23.04738 -22.28324 -21.14232 -20.29165 -19.37159 -17.41434 -16.83876 -16.61308 -16.37368 -16.10424 -15.93075 -15.66630 -15.50825 -15.24471 -15.04525 -14.94455 -14.53730 -14.14935 -13.77684 -13.56383 -13.03631 -12.94043 -12.56944 -12.55723 -12.48760 -12.26224 -12.17507 -12.09208 -11.81313 -11.58133 -11.51661 -11.41901 -11.35598 -10.90947 -10.77944 -10.57154 -10.31368 -10.28043 -10.24472 -9.93145 -9.80545 -9.76125 -9.34608 -9.03684 -8.85486 -8.52566 -7.95971 -6.10909 -4.09396 2.14506 2.37763 3.20822 3.26208 3.35622 3.36506 3.47527 3.52805 3.91247 4.33172 4.46078 4.54430 4.63502 4.72905 4.82332 4.86738 4.92853 5.02854 5.07872 5.13685 5.16321 5.19789 5.21298 5.30426 5.32985 5.39273 5.45033 5.46327 5.52383 5.58408 5.61745 5.65627 5.77478 5.84183 5.94506 6.06718 6.09962 6.16735 6.25539 6.32405 6.45679 6.56454 6.66514 6.81148 6.89752 6.89897 7.02346 7.14973 7.48023 7.61423 8.47649 9.08481 9.42689 9.48825 11.01725 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.013219 B = 0.003955 C = 0.003338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2117.595871 B = 7077.775740 C = 8385.511920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.389 6.389 3 C 0.045 3.955 4 C 0.112 3.888 5 N -0.479 5.479 6 C 0.319 3.681 7 N -0.451 5.451 8 C 0.015 3.985 9 C 0.070 3.930 10 O -0.381 6.381 11 C 0.089 3.911 12 H 0.068 0.932 13 C -0.144 4.144 14 C 0.043 3.957 15 N -0.319 5.319 16 N -0.267 5.267 17 C 0.245 3.755 18 C 0.122 3.878 19 C -0.146 4.146 20 C -0.145 4.145 21 C -0.502 4.502 22 H 0.098 0.902 23 C 0.076 3.924 24 N -0.886 5.886 25 Si 0.868 3.132 26 H -0.284 1.284 27 H -0.299 1.299 28 H -0.246 1.246 29 H 0.088 0.912 30 H 0.044 0.956 31 H 0.041 0.959 32 H 0.067 0.933 33 H 0.059 0.941 34 H 0.093 0.907 35 H 0.109 0.891 36 H 0.087 0.913 37 H 0.057 0.943 38 H 0.061 0.939 39 H 0.104 0.896 40 H 0.066 0.934 41 H 0.075 0.925 42 H 0.066 0.934 43 H 0.065 0.935 44 H 0.095 0.905 45 H 0.033 0.967 46 H 0.067 0.933 47 H 0.047 0.953 48 H 0.056 0.944 49 H 0.055 0.945 50 H 0.032 0.968 51 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.997 -8.762 -19.848 22.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.307 6.307 3 C -0.033 4.033 4 C -0.012 4.012 5 N -0.176 5.176 6 C -0.037 4.037 7 N -0.176 5.176 8 C -0.113 4.113 9 C -0.007 4.007 10 O -0.300 6.300 11 C 0.031 3.969 12 H 0.085 0.915 13 C -0.201 4.201 14 C -0.085 4.085 15 N -0.163 5.163 16 N -0.103 5.103 17 C -0.021 4.021 18 C 0.118 3.882 19 C -0.204 4.204 20 C -0.203 4.203 21 C -0.540 4.540 22 H 0.116 0.884 23 C -0.126 4.126 24 N -0.523 5.523 25 Si 0.700 3.300 26 H -0.211 1.211 27 H -0.227 1.227 28 H -0.172 1.172 29 H 0.106 0.894 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.112 0.888 35 H 0.127 0.873 36 H 0.106 0.894 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.122 0.878 40 H 0.085 0.915 41 H 0.094 0.906 42 H 0.085 0.915 43 H 0.084 0.916 44 H 0.114 0.886 45 H 0.052 0.948 46 H 0.085 0.915 47 H 0.066 0.934 48 H 0.075 0.925 49 H 0.073 0.927 50 H 0.051 0.949 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.624 -7.600 -19.758 22.181 hybrid contribution -0.283 -1.868 0.734 2.027 sum -6.907 -9.468 -19.023 22.343 Atomic orbital electron populations 1.22751 0.80366 1.02805 1.00309 1.87769 1.20227 1.27072 1.95593 1.22891 0.92855 0.85339 1.02168 1.21631 0.92552 0.81780 1.05204 1.46120 1.48966 1.15429 1.07063 1.22325 1.03127 0.90050 0.88196 1.58879 1.50893 1.11108 0.96707 1.23014 0.95523 0.95797 0.96924 1.22621 1.02087 0.86554 0.89478 1.88001 1.64505 1.21255 1.56192 1.22244 0.94024 0.89274 0.91316 0.91452 1.21735 1.03325 0.94816 1.00244 1.22742 1.03485 0.89452 0.92777 1.74641 1.18121 1.20586 1.02961 1.74201 1.18867 1.14126 1.03105 1.25497 0.97071 0.90082 0.89486 1.17165 0.93009 0.94235 0.83763 1.22537 0.97428 0.98210 1.02186 1.22443 1.00464 0.96884 1.00501 1.20768 1.46192 0.98098 0.88991 0.88407 1.24944 0.94600 0.96658 0.96414 1.69911 1.49324 1.31490 1.01597 0.87544 0.78297 0.86847 0.77359 1.21145 1.22737 1.17177 0.89396 0.93714 0.94013 0.91502 0.92270 0.88846 0.87252 0.89447 0.92421 0.92037 0.87844 0.91463 0.90610 0.91513 0.91620 0.88644 0.94795 0.91460 0.93427 0.92539 0.92695 0.94897 0.92510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 101.05 1.11 1.43 16 2 O -0.39 -4.81 10.70 -35.23 -0.38 -5.19 16 3 C 0.05 0.59 5.68 37.16 0.21 0.80 16 4 C 0.11 1.56 5.51 -4.04 -0.02 1.54 16 5 N -0.48 -8.38 2.81 -114.09 -0.32 -8.70 16 6 C 0.32 5.60 7.00 -318.88 -2.23 3.37 16 7 N -0.45 -6.16 4.74 -174.20 -0.83 -6.99 16 8 C 0.02 0.17 5.50 -3.71 -0.02 0.15 16 9 C 0.07 0.64 7.01 37.21 0.26 0.90 16 10 O -0.38 -4.17 10.47 -35.23 -0.37 -4.54 16 11 C 0.09 0.90 3.42 -26.68 -0.09 0.81 16 12 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 13 C -0.14 -1.18 9.57 37.16 0.36 -0.82 16 14 C 0.04 0.54 4.34 -3.71 -0.02 0.53 16 15 N -0.32 -6.79 11.37 30.31 0.34 -6.45 16 16 N -0.27 -6.44 11.01 32.99 0.36 -6.07 16 17 C 0.25 5.32 6.28 -154.02 -0.97 4.35 16 18 C 0.12 2.74 0.47 -156.81 -0.07 2.66 16 19 C -0.15 -2.95 6.20 37.16 0.23 -2.72 16 20 C -0.15 -2.98 7.56 37.16 0.28 -2.70 16 21 C -0.50 -13.83 8.52 -34.44 -0.29 -14.12 16 22 H 0.10 3.06 7.20 -52.49 -0.38 2.68 16 23 C 0.08 2.12 5.33 -17.82 -0.09 2.03 16 24 N -0.89 -26.60 13.96 55.43 0.77 -25.83 16 25 Si 0.87 20.37 22.76 -169.99 -3.87 16.50 16 26 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 27 H -0.30 -7.15 7.11 56.52 0.40 -6.75 16 28 H -0.25 -5.15 4.47 56.52 0.25 -4.90 16 29 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.98 5.90 -51.93 -0.31 0.67 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.09 1.09 5.78 -51.93 -0.30 0.79 16 35 H 0.11 1.56 4.49 -51.93 -0.23 1.33 16 36 H 0.09 0.91 5.76 -51.93 -0.30 0.61 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.07 0.93 8.06 -51.93 -0.42 0.51 16 44 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 45 H 0.03 0.58 5.04 -51.93 -0.26 0.32 16 46 H 0.07 1.43 4.35 -51.93 -0.23 1.20 16 47 H 0.05 0.96 7.56 -51.93 -0.39 0.57 16 48 H 0.06 1.16 8.13 -51.93 -0.42 0.74 16 49 H 0.05 1.17 2.35 -51.93 -0.12 1.05 16 50 H 0.03 0.56 5.82 -51.93 -0.30 0.26 16 51 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 376.37 15.07 5.67 5.67 Total: -1.00 -32.94 376.37 -7.99 -40.93 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -8.02 Total: 2.47 kcal Atomic # 6 Polarization: -0.43 SS G_CDS: -1.36 Total: -1.79 kcal Atomic # 7 Polarization: -54.38 SS G_CDS: 0.33 Total: -54.04 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: -0.75 Total: -9.73 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -3.87 Total: 16.50 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.94 -7.99 -40.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650407200.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.767 kcal (2) G-P(sol) polarization free energy of solvation -32.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds