Wall clock time and date at job start Tue Mar 31 2020 22:02:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42907 * 113.99815 * 2 1 4 4 C 1.52999 * 109.47197 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.47136 * 185.08719 * 4 3 2 6 6 C 1.36458 * 127.13736 * 274.75769 * 5 4 3 7 7 N 1.38580 * 126.46855 * 0.03894 * 6 5 4 8 8 C 1.47017 * 111.00117 * 290.51019 * 7 6 5 9 9 C 1.53101 * 109.26094 * 177.61340 * 8 7 6 10 10 O 1.43015 * 109.25787 * 56.84274 * 9 8 7 11 11 C 1.43015 * 113.74180 * 301.33640 * 10 9 8 12 12 H 1.08995 * 109.50444 * 298.73389 * 11 10 9 13 13 C 1.53005 * 109.50414 * 178.64905 * 11 10 9 14 14 C 1.47016 * 110.99994 * 166.87859 * 7 6 5 15 15 N 1.31211 * 107.05467 * 179.77758 * 6 5 4 16 16 N 1.28534 * 109.86185 * 0.22261 * 15 6 5 17 17 C 1.30298 * 110.04933 * 0.02562 * 16 15 6 18 18 C 1.50695 * 126.34173 * 180.02562 * 17 16 15 19 19 C 1.53004 * 109.46902 * 126.36831 * 18 17 16 20 20 C 1.53001 * 109.47168 * 246.36978 * 18 17 16 21 21 C 1.50696 * 109.47310 * 6.37238 * 18 17 16 22 22 H 1.07998 * 120.00403 * 0.98572 * 21 18 17 23 23 C 1.37887 * 120.00036 * 180.98970 * 21 18 17 24 24 N 1.31512 * 119.99785 * 191.18919 * 23 21 18 25 25 Si 1.86800 * 119.99757 * 11.19418 * 23 21 18 26 26 H 1.48491 * 109.47216 * 94.15350 * 25 23 21 27 27 H 1.48499 * 109.46653 * 214.15283 * 25 23 21 28 28 H 1.48497 * 109.47305 * 334.15077 * 25 23 21 29 29 H 1.09000 * 109.46810 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47258 * 300.00088 * 1 2 3 31 31 H 1.09004 * 109.47263 * 59.99780 * 1 2 3 32 32 H 1.09003 * 109.47087 * 59.99775 * 3 2 1 33 33 H 1.08998 * 109.47321 * 299.99927 * 3 2 1 34 34 H 1.08998 * 109.47079 * 65.08822 * 4 3 2 35 35 H 1.09005 * 109.47125 * 305.08763 * 4 3 2 36 36 H 1.08996 * 109.50428 * 57.67532 * 8 7 6 37 37 H 1.09002 * 109.50645 * 297.54452 * 8 7 6 38 38 H 1.09002 * 109.49835 * 296.91260 * 9 8 7 39 39 H 1.08997 * 109.50768 * 176.78341 * 9 8 7 40 40 H 1.08993 * 109.47070 * 60.08281 * 13 11 10 41 41 H 1.09000 * 109.46750 * 180.08772 * 13 11 10 42 42 H 1.09000 * 109.46779 * 300.08129 * 13 11 10 43 43 H 1.09004 * 109.50869 * 62.45099 * 14 7 6 44 44 H 1.09005 * 109.50553 * 302.32888 * 14 7 6 45 45 H 1.09005 * 109.46837 * 74.36756 * 19 18 17 46 46 H 1.09006 * 109.47167 * 194.35834 * 19 18 17 47 47 H 1.08994 * 109.47644 * 314.36425 * 19 18 17 48 48 H 1.09000 * 109.47404 * 52.50821 * 20 18 17 49 49 H 1.09001 * 109.47180 * 172.50783 * 20 18 17 50 50 H 1.09003 * 109.47226 * 292.50653 * 20 18 17 51 51 H 0.96997 * 119.99460 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 7 4.1307 2.5177 0.1231 6 6 4.3911 3.3995 -0.8852 7 7 4.1405 3.2055 -2.2343 8 6 5.0378 2.1851 -2.7954 9 6 4.6879 1.9600 -4.2688 10 8 4.7763 3.2034 -4.9699 11 6 3.9151 4.2200 -4.4501 12 1 2.8778 3.8955 -4.5329 13 6 4.1114 5.5119 -5.2460 14 6 4.2572 4.4679 -2.9787 15 7 4.9182 4.4680 -0.3355 16 7 5.0057 4.3066 0.9367 17 6 4.5438 3.1350 1.2711 18 6 4.4717 2.5684 2.6656 19 6 3.0403 2.1137 2.9579 20 6 5.4199 1.3731 2.7801 21 6 4.8754 3.6268 3.6595 22 1 5.1407 4.6161 3.3170 23 6 4.9060 3.3322 5.0062 24 7 5.0409 4.2987 5.8877 25 14 4.7561 1.5603 5.5782 26 1 6.1119 0.9839 5.7646 27 1 4.0184 1.5168 6.8662 28 1 4.0189 0.7716 4.5586 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 1.6885 1.8465 0.8900 33 1 1.6886 1.8465 -0.8900 34 1 3.8638 0.7244 -0.9312 35 1 3.8506 0.5674 0.8418 36 1 4.9164 1.2517 -2.2458 37 1 6.0706 2.5243 -2.7144 38 1 3.6731 1.5698 -4.3463 39 1 5.3872 1.2462 -4.7041 40 1 3.8694 5.3335 -6.2937 41 1 3.4559 6.2867 -4.8484 42 1 5.1488 5.8358 -5.1627 43 1 5.2775 4.8436 -2.9005 44 1 3.5660 5.2010 -2.5628 45 1 2.8361 1.1880 2.4199 46 1 2.9242 1.9448 4.0286 47 1 2.3409 2.8843 2.6337 48 1 6.4148 1.6650 2.4438 49 1 5.4689 1.0463 3.8188 50 1 5.0516 0.5563 2.1592 51 1 5.0621 4.0914 6.8351 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001650407200.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:02:53 Heat of formation + Delta-G solvation = 6.454185 kcal Electronic energy + Delta-G solvation = -32034.301193 eV Core-core repulsion = 27971.223039 eV Total energy + Delta-G solvation = -4063.078155 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -44.10982 -40.79870 -39.15666 -38.06878 -37.03694 -35.91646 -33.88785 -33.74053 -31.00765 -30.94542 -29.10797 -28.24129 -27.46757 -27.12717 -26.76303 -24.97874 -24.04241 -23.74703 -22.30966 -21.40707 -20.95832 -18.60511 -18.24187 -17.83789 -17.50195 -17.31969 -17.24899 -17.05644 -16.60204 -16.36454 -16.14892 -15.92406 -15.58256 -15.33913 -15.15847 -14.93196 -14.76065 -14.12909 -13.98682 -13.82393 -13.73449 -13.36798 -13.22758 -13.17031 -13.04797 -12.69986 -12.59523 -12.44091 -12.34226 -12.26108 -12.20629 -12.16899 -11.99333 -11.83539 -11.55544 -11.23829 -11.09060 -10.87405 -10.74119 -10.67963 -10.55657 -10.45263 -9.42599 -8.25452 -6.29599 0.72343 1.05670 1.35844 1.36949 1.49351 1.86566 2.34184 2.35970 2.72752 2.85585 3.07938 3.41889 3.46824 3.65234 3.69668 3.82003 3.83046 4.00279 4.02300 4.05009 4.13602 4.23469 4.27520 4.34268 4.41865 4.43316 4.46685 4.52805 4.53332 4.56089 4.61810 4.65130 4.69407 4.75416 4.80378 4.82280 4.85602 4.90179 4.95346 5.02103 5.04176 5.19248 5.28276 5.42294 5.49656 5.53826 5.63582 5.99839 6.12335 6.13411 6.39351 6.82324 7.32387 7.85416 8.91958 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.013219 B = 0.003955 C = 0.003338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2117.595871 B = 7077.775740 C = 8385.511920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.395 6.395 3 C 0.054 3.946 4 C 0.104 3.896 5 N -0.469 5.469 6 C 0.343 3.657 7 N -0.442 5.442 8 C 0.013 3.987 9 C 0.073 3.927 10 O -0.393 6.393 11 C 0.097 3.903 12 H 0.082 0.918 13 C -0.142 4.142 14 C 0.043 3.957 15 N -0.360 5.360 16 N -0.323 5.323 17 C 0.234 3.766 18 C 0.120 3.880 19 C -0.138 4.138 20 C -0.143 4.143 21 C -0.508 4.508 22 H 0.040 0.960 23 C 0.017 3.983 24 N -0.945 5.945 25 Si 0.932 3.068 26 H -0.281 1.281 27 H -0.305 1.305 28 H -0.197 1.197 29 H 0.109 0.891 30 H 0.042 0.958 31 H 0.053 0.947 32 H 0.050 0.950 33 H 0.064 0.936 34 H 0.123 0.877 35 H 0.113 0.887 36 H 0.103 0.897 37 H 0.040 0.960 38 H 0.079 0.921 39 H 0.130 0.870 40 H 0.081 0.919 41 H 0.085 0.915 42 H 0.057 0.943 43 H 0.044 0.956 44 H 0.085 0.915 45 H 0.071 0.929 46 H 0.059 0.941 47 H 0.039 0.961 48 H 0.046 0.954 49 H 0.050 0.950 50 H 0.076 0.924 51 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.730 -13.056 -22.619 27.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.314 6.314 3 C -0.024 4.024 4 C -0.018 4.018 5 N -0.165 5.165 6 C -0.014 4.014 7 N -0.167 5.167 8 C -0.114 4.114 9 C -0.004 4.004 10 O -0.312 6.312 11 C 0.039 3.961 12 H 0.100 0.900 13 C -0.199 4.199 14 C -0.085 4.085 15 N -0.203 5.203 16 N -0.159 5.159 17 C -0.035 4.035 18 C 0.116 3.884 19 C -0.196 4.196 20 C -0.201 4.201 21 C -0.547 4.547 22 H 0.058 0.942 23 C -0.180 4.180 24 N -0.585 5.585 25 Si 0.759 3.241 26 H -0.208 1.208 27 H -0.234 1.234 28 H -0.120 1.120 29 H 0.127 0.873 30 H 0.061 0.939 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.082 0.918 34 H 0.141 0.859 35 H 0.131 0.869 36 H 0.122 0.878 37 H 0.059 0.941 38 H 0.097 0.903 39 H 0.148 0.852 40 H 0.100 0.900 41 H 0.104 0.896 42 H 0.076 0.924 43 H 0.062 0.938 44 H 0.104 0.896 45 H 0.090 0.910 46 H 0.078 0.922 47 H 0.058 0.942 48 H 0.065 0.935 49 H 0.068 0.932 50 H 0.095 0.905 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.371 -11.920 -22.581 26.872 hybrid contribution 0.231 -0.429 1.436 1.516 sum -8.140 -12.349 -21.146 25.805 Atomic orbital electron populations 1.22988 0.78768 1.04412 1.00819 1.87753 1.21891 1.26071 1.95638 1.22687 0.92198 0.85909 1.01624 1.21971 0.93152 0.79703 1.06940 1.46090 1.48486 1.16455 1.05487 1.22717 1.00187 0.88776 0.89725 1.59130 1.50940 1.12026 0.94564 1.23197 0.94063 0.95260 0.98882 1.22819 1.03885 0.86309 0.87400 1.88004 1.64846 1.21979 1.56371 1.22272 0.94534 0.90097 0.89181 0.90023 1.21758 1.03070 0.94242 1.00866 1.22814 1.02022 0.88973 0.94663 1.74526 1.20669 1.22948 1.02193 1.74101 1.20820 1.16211 1.04780 1.25168 0.97954 0.90091 0.90317 1.17076 0.94752 0.93597 0.82957 1.22416 0.95433 0.99706 1.02043 1.22370 0.99622 0.97063 1.00999 1.20886 1.45687 0.97469 0.90613 0.94210 1.25851 0.94126 1.01788 0.96231 1.70094 1.51777 1.34571 1.02014 0.86508 0.78923 0.81172 0.77451 1.20809 1.23403 1.11987 0.87286 0.93893 0.92884 0.93225 0.91814 0.85866 0.86873 0.87844 0.94136 0.90288 0.85223 0.90025 0.89617 0.92434 0.93769 0.89637 0.90985 0.92238 0.94208 0.93496 0.93171 0.90497 0.92570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 113.37 1.25 1.63 16 2 O -0.40 -8.07 10.70 -148.98 -1.59 -9.67 16 3 C 0.05 1.23 5.68 71.98 0.41 1.63 16 4 C 0.10 2.51 5.51 86.38 0.48 2.99 16 5 N -0.47 -15.75 2.81 -514.86 -1.45 -17.20 16 6 C 0.34 11.91 7.00 260.11 1.82 13.73 16 7 N -0.44 -11.33 4.74 -705.05 -3.35 -14.68 16 8 C 0.01 0.26 5.50 86.31 0.47 0.73 16 9 C 0.07 1.05 7.01 72.02 0.50 1.55 16 10 O -0.39 -7.50 10.47 -148.98 -1.56 -9.06 16 11 C 0.10 1.76 3.42 30.63 0.10 1.86 16 12 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 13 C -0.14 -2.09 9.57 71.98 0.69 -1.40 16 14 C 0.04 1.06 4.34 86.31 0.37 1.43 16 15 N -0.36 -15.96 11.37 -58.00 -0.66 -16.62 16 16 N -0.32 -16.42 11.01 -49.54 -0.55 -16.97 16 17 C 0.23 10.24 6.28 137.64 0.86 11.10 16 18 C 0.12 5.34 0.47 -53.68 -0.03 5.31 16 19 C -0.14 -5.33 6.20 71.98 0.45 -4.88 16 20 C -0.14 -5.51 7.56 71.98 0.54 -4.97 16 21 C -0.51 -29.29 8.52 25.60 0.22 -29.07 16 22 H 0.04 2.70 7.20 -2.91 -0.02 2.68 16 23 C 0.02 0.98 5.33 84.66 0.45 1.43 16 24 N -0.95 -59.79 13.96 21.45 0.30 -59.49 16 25 Si 0.93 41.73 22.76 68.60 1.56 43.29 16 26 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 27 H -0.31 -13.92 7.11 99.48 0.71 -13.22 16 28 H -0.20 -7.25 4.47 99.48 0.44 -6.80 16 29 H 0.11 1.15 8.14 -2.39 -0.02 1.14 16 30 H 0.04 0.65 8.14 -2.39 -0.02 0.64 16 31 H 0.05 0.67 8.14 -2.38 -0.02 0.65 16 32 H 0.05 1.32 5.90 -2.39 -0.01 1.30 16 33 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.12 2.26 5.78 -2.39 -0.01 2.24 16 35 H 0.11 2.67 4.49 -2.38 -0.01 2.66 16 36 H 0.10 1.73 5.76 -2.39 -0.01 1.72 16 37 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.13 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.04 1.29 8.06 -2.38 -0.02 1.27 16 44 H 0.09 2.27 8.14 -2.38 -0.02 2.25 16 45 H 0.07 2.21 5.04 -2.38 -0.01 2.19 16 46 H 0.06 2.38 4.35 -2.38 -0.01 2.37 16 47 H 0.04 1.57 7.56 -2.39 -0.02 1.55 16 48 H 0.05 1.88 8.13 -2.39 -0.02 1.86 16 49 H 0.05 1.98 2.35 -2.39 -0.01 1.97 16 50 H 0.08 2.27 5.82 -2.39 -0.01 2.25 16 51 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 Total: -1.00 -78.69 376.37 2.00 -76.69 By element: Atomic # 1 Polarization: 19.93 SS G_CDS: 0.68 Total: 20.61 kcal Atomic # 6 Polarization: -5.52 SS G_CDS: 8.60 Total: 3.09 kcal Atomic # 7 Polarization: -119.25 SS G_CDS: -5.70 Total: -124.95 kcal Atomic # 8 Polarization: -15.58 SS G_CDS: -3.15 Total: -18.73 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 1.56 Total: 43.29 kcal Total: -78.69 2.00 -76.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650407200.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.149 kcal (2) G-P(sol) polarization free energy of solvation -78.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.694 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds