Wall clock time and date at job start Tue Mar 31 2020 21:42:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42893 * 113.99984 * 2 1 4 4 C 1.52999 * 109.47295 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.47161 * 184.04502 * 4 3 2 6 6 C 1.36731 * 127.13890 * 266.78005 * 5 4 3 7 7 C 1.50706 * 126.34746 * 0.02562 * 6 5 4 8 8 C 1.52998 * 109.47159 * 269.71652 * 7 6 5 9 9 H 1.08993 * 109.47606 * 54.99537 * 8 7 6 10 10 O 1.42905 * 109.46646 * 294.99648 * 8 7 6 11 11 C 1.50702 * 109.47164 * 174.99962 * 8 7 6 12 12 H 1.07997 * 119.99297 * 359.97438 * 11 8 7 13 13 C 1.37869 * 119.99919 * 179.97438 * 11 8 7 14 14 N 1.31517 * 120.00090 * 179.97438 * 13 11 8 15 15 Si 1.86803 * 120.00187 * 359.97438 * 13 11 8 16 16 H 1.48500 * 109.47340 * 270.00348 * 15 13 11 17 17 H 1.48498 * 109.46849 * 30.00590 * 15 13 11 18 18 H 1.48504 * 109.46910 * 150.00181 * 15 13 11 19 19 N 1.30299 * 107.30777 * 179.76000 * 6 5 4 20 20 N 1.28530 * 110.05008 * 0.23742 * 19 6 5 21 21 C 1.31220 * 109.86397 * 0.02562 * 20 19 6 22 22 N 1.38574 * 126.47578 * 180.02562 * 21 20 19 23 23 C 1.47442 * 110.99957 * 252.14272 * 22 21 20 24 24 C 1.54320 * 107.23671 * 123.25433 * 23 22 21 25 25 H 1.08995 * 110.70361 * 263.89878 * 24 23 22 26 26 C 1.53003 * 110.70438 * 140.66658 * 24 23 22 27 27 C 1.55141 * 103.01642 * 22.28588 * 24 23 22 28 28 C 1.47846 * 111.00113 * 12.98160 * 22 21 20 29 29 H 1.09003 * 110.37284 * 332.46685 * 28 22 21 30 30 C 1.52995 * 110.37371 * 94.80404 * 28 22 21 31 31 H 1.08996 * 109.47084 * 299.99883 * 1 2 3 32 32 H 1.08991 * 109.47225 * 60.00142 * 1 2 3 33 33 H 1.09007 * 109.46721 * 179.97438 * 1 2 3 34 34 H 1.09003 * 109.47297 * 60.00052 * 3 2 1 35 35 H 1.08999 * 109.46989 * 300.00258 * 3 2 1 36 36 H 1.09003 * 109.47182 * 64.04542 * 4 3 2 37 37 H 1.09002 * 109.46922 * 304.04491 * 4 3 2 38 38 H 1.08995 * 109.47170 * 149.70961 * 7 6 5 39 39 H 1.09000 * 109.46879 * 29.71363 * 7 6 5 40 40 H 0.96696 * 114.00135 * 299.99570 * 10 8 7 41 41 H 0.96995 * 120.00089 * 179.97438 * 14 13 11 42 42 H 1.09000 * 109.88814 * 242.66171 * 23 22 21 43 43 H 1.09000 * 109.88935 * 3.84616 * 23 22 21 44 44 H 1.08998 * 109.47266 * 61.45462 * 26 24 23 45 45 H 1.08997 * 109.46681 * 181.45682 * 26 24 23 46 46 H 1.08999 * 109.47030 * 301.45216 * 26 24 23 47 47 H 1.08994 * 110.99349 * 82.43779 * 27 24 23 48 48 H 1.08999 * 110.99005 * 206.25759 * 27 24 23 49 49 H 1.09005 * 109.46847 * 58.55298 * 30 28 22 50 50 H 1.09003 * 109.47354 * 178.54605 * 30 28 22 51 51 H 1.08998 * 109.47600 * 298.55106 * 30 28 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 4.1311 2.5196 0.0968 6 6 4.5282 3.3237 -0.9353 7 6 4.4352 3.0023 -2.4048 8 6 5.7217 2.3092 -2.8577 9 1 5.9032 1.4352 -2.2324 10 8 6.8192 3.2167 -2.7380 11 6 5.5809 1.8781 -4.2949 12 1 4.6652 2.0782 -4.8313 13 6 6.6211 1.2284 -4.9248 14 7 6.4980 0.8518 -6.1788 15 14 8.2053 0.8831 -3.9971 16 1 9.1399 2.0238 -4.1717 17 1 7.9049 0.7058 -2.5536 18 1 8.8302 -0.3548 -4.5284 19 7 4.9968 4.4216 -0.4131 20 7 4.9279 4.3642 0.8690 21 6 4.4078 3.2170 1.2366 22 7 4.1768 2.7960 2.5365 23 6 5.1303 1.7416 2.9278 24 6 5.8602 2.2328 4.1956 25 1 6.8132 2.6943 3.9372 26 6 6.0650 1.0814 5.1822 27 6 4.8804 3.2857 4.7771 28 6 4.3022 3.9207 3.4879 29 1 4.9857 4.6743 3.0966 30 6 2.9303 4.5377 3.7670 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0278 -0.0005 34 1 1.6886 1.8463 0.8900 35 1 1.6886 1.8463 -0.8900 36 1 3.8618 0.7078 -0.9249 37 1 3.8526 0.5823 0.8507 38 1 4.3005 3.9242 -2.9705 39 1 3.5859 2.3417 -2.5791 40 1 6.7254 4.0194 -3.2689 41 1 7.2300 0.3950 -6.6221 42 1 4.5936 0.8177 3.1433 43 1 5.8500 1.5765 2.1260 44 1 6.6848 0.3129 4.7203 45 1 6.5581 1.4552 6.0795 46 1 5.0978 0.6558 5.4497 47 1 4.0954 2.8072 5.3627 48 1 5.4127 4.0273 5.3728 49 1 2.2645 3.7753 4.1715 50 1 3.0362 5.3476 4.4888 51 1 2.5127 4.9298 2.8397 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001650414567.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:42:50 Heat of formation + Delta-G solvation = -12.064166 kcal Electronic energy + Delta-G solvation = -31351.760745 eV Core-core repulsion = 27287.879574 eV Total energy + Delta-G solvation = -4063.881170 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 4.88 seconds Orbital eigenvalues (eV) -42.77342 -39.56390 -38.18313 -36.48350 -35.07877 -33.83129 -32.32679 -32.17237 -31.05754 -29.74110 -28.41287 -27.01714 -26.54698 -25.94766 -25.03541 -23.57146 -22.21051 -21.30071 -20.68475 -20.06515 -19.76108 -17.70892 -17.22818 -17.01478 -16.24894 -16.11873 -15.88358 -15.31400 -14.93015 -14.84893 -14.52143 -14.34795 -14.14282 -14.06734 -13.77045 -13.63123 -13.21616 -13.10024 -12.83961 -12.64601 -12.45190 -12.14081 -12.04113 -11.94015 -11.73734 -11.64152 -11.57739 -11.42247 -11.28054 -11.09888 -10.91985 -10.86725 -10.71846 -10.63085 -10.30239 -10.02253 -9.94590 -9.88923 -9.49912 -9.21806 -8.72072 -8.63750 -8.02862 -6.20417 -4.33729 1.96793 2.27145 3.17044 3.40525 3.45124 3.45899 3.57703 3.86550 4.17507 4.36565 4.44340 4.54537 4.56794 4.75567 4.81201 4.96329 5.06153 5.08795 5.09950 5.12280 5.14177 5.16417 5.18971 5.25876 5.28812 5.39534 5.41772 5.45504 5.48729 5.53408 5.56571 5.62317 5.66597 5.72731 5.75509 5.85701 5.92544 6.03239 6.05751 6.12471 6.20877 6.27405 6.40348 6.57908 6.78860 6.85810 7.17380 7.33741 7.46837 8.19949 8.73760 8.97419 9.10207 9.42564 10.89540 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.010242 B = 0.003866 C = 0.003373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2733.141079 B = 7240.115217 C = 8299.384762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.386 6.386 3 C 0.054 3.946 4 C 0.113 3.887 5 N -0.474 5.474 6 C 0.213 3.787 7 C -0.055 4.055 8 C 0.203 3.797 9 H 0.055 0.945 10 O -0.579 6.579 11 C -0.565 4.565 12 H 0.078 0.922 13 C 0.086 3.914 14 N -0.889 5.889 15 Si 0.913 3.087 16 H -0.276 1.276 17 H -0.272 1.272 18 H -0.305 1.305 19 N -0.281 5.281 20 N -0.320 5.320 21 C 0.335 3.665 22 N -0.446 5.446 23 C 0.049 3.951 24 C -0.112 4.112 25 H 0.081 0.919 26 C -0.139 4.139 27 C -0.119 4.119 28 C 0.078 3.922 29 H 0.089 0.911 30 C -0.132 4.132 31 H 0.041 0.959 32 H 0.044 0.956 33 H 0.089 0.911 34 H 0.059 0.941 35 H 0.057 0.943 36 H 0.111 0.889 37 H 0.099 0.901 38 H 0.097 0.903 39 H 0.083 0.917 40 H 0.366 0.634 41 H 0.267 0.733 42 H 0.088 0.912 43 H 0.060 0.940 44 H 0.057 0.943 45 H 0.058 0.942 46 H 0.059 0.941 47 H 0.079 0.921 48 H 0.080 0.920 49 H 0.058 0.942 50 H 0.063 0.937 51 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.518 0.130 21.921 23.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.304 6.304 3 C -0.024 4.024 4 C -0.011 4.011 5 N -0.170 5.170 6 C -0.054 4.054 7 C -0.095 4.095 8 C 0.144 3.856 9 H 0.072 0.928 10 O -0.386 6.386 11 C -0.602 4.602 12 H 0.096 0.904 13 C -0.119 4.119 14 N -0.525 5.525 15 Si 0.743 3.257 16 H -0.202 1.202 17 H -0.197 1.197 18 H -0.233 1.233 19 N -0.119 5.119 20 N -0.164 5.164 21 C -0.021 4.021 22 N -0.170 5.170 23 C -0.079 4.079 24 C -0.131 4.131 25 H 0.099 0.901 26 C -0.197 4.197 27 C -0.157 4.157 28 C -0.029 4.029 29 H 0.107 0.893 30 C -0.190 4.190 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.107 0.893 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.129 0.871 37 H 0.117 0.883 38 H 0.115 0.885 39 H 0.101 0.899 40 H 0.213 0.787 41 H 0.076 0.924 42 H 0.106 0.894 43 H 0.079 0.921 44 H 0.076 0.924 45 H 0.078 0.922 46 H 0.078 0.922 47 H 0.097 0.903 48 H 0.098 0.902 49 H 0.077 0.923 50 H 0.082 0.918 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -9.038 0.595 22.296 24.065 hybrid contribution 0.442 -0.738 -0.259 0.898 sum -8.596 -0.142 22.037 23.654 Atomic orbital electron populations 1.22760 0.80287 1.02968 1.00185 1.87807 1.20261 1.26781 1.95530 1.22686 0.92769 0.85444 1.01503 1.21532 0.92369 0.80942 1.06222 1.46034 1.48473 1.16472 1.06029 1.25284 0.99036 0.87790 0.93312 1.20985 1.02549 1.03146 0.82832 1.19814 0.81276 0.88065 0.96442 0.92766 1.86388 1.46562 1.34043 1.71580 1.21461 1.03386 1.39965 0.95382 0.90436 1.24969 0.98957 0.93373 0.94610 1.69941 1.32991 1.38479 1.11121 0.86260 0.82982 0.76525 0.79950 1.20220 1.19677 1.23302 1.74012 1.18600 1.19154 1.00181 1.74458 1.18886 1.16827 1.06248 1.22515 1.01316 0.91233 0.87044 1.60274 1.48694 1.11601 0.96453 1.23026 0.93143 0.94490 0.97196 1.22352 0.99024 0.96787 0.94953 0.90106 1.21724 1.02007 0.97403 0.98554 1.22867 0.98461 0.97875 0.96517 1.22634 0.98648 0.91674 0.89988 0.89268 1.21657 0.95555 1.00119 1.01636 0.94033 0.93748 0.89275 0.92238 0.92437 0.87122 0.88267 0.88476 0.89872 0.78684 0.92377 0.89355 0.92120 0.92381 0.92248 0.92203 0.90254 0.90177 0.92256 0.91842 0.92564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 101.05 1.11 1.42 16 2 O -0.39 -4.72 10.70 -35.23 -0.38 -5.10 16 3 C 0.05 0.66 6.26 37.16 0.23 0.89 16 4 C 0.11 1.54 6.28 -4.04 -0.03 1.52 16 5 N -0.47 -7.71 2.81 -114.08 -0.32 -8.03 16 6 C 0.21 4.00 7.09 -154.02 -1.09 2.91 16 7 C -0.05 -1.04 5.02 -27.88 -0.14 -1.18 16 8 C 0.20 4.62 2.29 -27.88 -0.06 4.55 16 9 H 0.05 1.30 7.20 -51.93 -0.37 0.93 16 10 O -0.58 -13.52 10.78 -35.23 -0.38 -13.90 16 11 C -0.56 -14.98 9.34 -34.44 -0.32 -15.30 16 12 H 0.08 2.17 7.99 -52.49 -0.42 1.75 16 13 C 0.09 2.42 5.47 -17.82 -0.10 2.32 16 14 N -0.89 -26.35 13.96 55.43 0.77 -25.57 16 15 Si 0.91 23.14 26.18 -169.99 -4.45 18.69 16 16 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 17 H -0.27 -6.90 6.54 56.52 0.37 -6.53 16 18 H -0.30 -7.65 7.11 56.52 0.40 -7.24 16 19 N -0.28 -5.77 12.18 32.99 0.40 -5.36 16 20 N -0.32 -6.09 10.71 30.32 0.32 -5.76 16 21 C 0.34 5.45 6.66 -318.87 -2.12 3.32 16 22 N -0.45 -5.71 4.86 -163.85 -0.80 -6.50 16 23 C 0.05 0.55 5.55 -2.84 -0.02 0.53 16 24 C -0.11 -1.03 3.54 -88.79 -0.31 -1.34 16 25 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 26 C -0.14 -1.00 9.13 37.16 0.34 -0.66 16 27 C -0.12 -1.01 5.94 -24.59 -0.15 -1.15 16 28 C 0.08 0.88 2.90 -66.19 -0.19 0.68 16 29 H 0.09 1.22 6.79 -51.93 -0.35 0.86 16 30 C -0.13 -1.31 9.59 37.15 0.36 -0.96 16 31 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.09 0.65 8.14 -51.92 -0.42 0.23 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.11 1.59 7.70 -51.93 -0.40 1.19 16 37 H 0.10 1.23 7.26 -51.93 -0.38 0.85 16 38 H 0.10 1.79 8.14 -51.93 -0.42 1.37 16 39 H 0.08 1.45 7.81 -51.93 -0.41 1.04 16 40 H 0.37 7.62 9.04 45.56 0.41 8.03 16 41 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 42 H 0.09 0.87 7.82 -51.93 -0.41 0.46 16 43 H 0.06 0.81 7.57 -51.93 -0.39 0.42 16 44 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 46 H 0.06 0.40 8.13 -51.93 -0.42 -0.03 16 47 H 0.08 0.60 7.95 -51.93 -0.41 0.18 16 48 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 49 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 50 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 51 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 408.42 15.07 6.15 6.15 Total: -1.00 -33.08 408.42 -9.37 -42.45 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: -8.21 Total: 5.37 kcal Atomic # 6 Polarization: 0.05 SS G_CDS: -2.49 Total: -2.44 kcal Atomic # 7 Polarization: -51.61 SS G_CDS: 0.38 Total: -51.23 kcal Atomic # 8 Polarization: -18.24 SS G_CDS: -0.76 Total: -19.00 kcal Atomic # 14 Polarization: 23.14 SS G_CDS: -4.45 Total: 18.69 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -33.08 -9.37 -42.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650414567.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.389 kcal (2) G-P(sol) polarization free energy of solvation -33.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.89 seconds