Wall clock time and date at job start Tue Mar 31 2020 21:42:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42893 * 113.99984 * 2 1 4 4 C 1.52999 * 109.47295 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.47161 * 184.04502 * 4 3 2 6 6 C 1.36731 * 127.13890 * 266.78005 * 5 4 3 7 7 C 1.50706 * 126.34746 * 0.02562 * 6 5 4 8 8 C 1.52998 * 109.47159 * 269.71652 * 7 6 5 9 9 H 1.08993 * 109.47606 * 54.99537 * 8 7 6 10 10 O 1.42905 * 109.46646 * 294.99648 * 8 7 6 11 11 C 1.50702 * 109.47164 * 174.99962 * 8 7 6 12 12 H 1.07997 * 119.99297 * 359.97438 * 11 8 7 13 13 C 1.37869 * 119.99919 * 179.97438 * 11 8 7 14 14 N 1.31517 * 120.00090 * 179.97438 * 13 11 8 15 15 Si 1.86803 * 120.00187 * 359.97438 * 13 11 8 16 16 H 1.48500 * 109.47340 * 270.00348 * 15 13 11 17 17 H 1.48498 * 109.46849 * 30.00590 * 15 13 11 18 18 H 1.48504 * 109.46910 * 150.00181 * 15 13 11 19 19 N 1.30299 * 107.30777 * 179.76000 * 6 5 4 20 20 N 1.28530 * 110.05008 * 0.23742 * 19 6 5 21 21 C 1.31220 * 109.86397 * 0.02562 * 20 19 6 22 22 N 1.38574 * 126.47578 * 180.02562 * 21 20 19 23 23 C 1.47442 * 110.99957 * 252.14272 * 22 21 20 24 24 C 1.54320 * 107.23671 * 123.25433 * 23 22 21 25 25 H 1.08995 * 110.70361 * 263.89878 * 24 23 22 26 26 C 1.53003 * 110.70438 * 140.66658 * 24 23 22 27 27 C 1.55141 * 103.01642 * 22.28588 * 24 23 22 28 28 C 1.47846 * 111.00113 * 12.98160 * 22 21 20 29 29 H 1.09003 * 110.37284 * 332.46685 * 28 22 21 30 30 C 1.52995 * 110.37371 * 94.80404 * 28 22 21 31 31 H 1.08996 * 109.47084 * 299.99883 * 1 2 3 32 32 H 1.08991 * 109.47225 * 60.00142 * 1 2 3 33 33 H 1.09007 * 109.46721 * 179.97438 * 1 2 3 34 34 H 1.09003 * 109.47297 * 60.00052 * 3 2 1 35 35 H 1.08999 * 109.46989 * 300.00258 * 3 2 1 36 36 H 1.09003 * 109.47182 * 64.04542 * 4 3 2 37 37 H 1.09002 * 109.46922 * 304.04491 * 4 3 2 38 38 H 1.08995 * 109.47170 * 149.70961 * 7 6 5 39 39 H 1.09000 * 109.46879 * 29.71363 * 7 6 5 40 40 H 0.96696 * 114.00135 * 299.99570 * 10 8 7 41 41 H 0.96995 * 120.00089 * 179.97438 * 14 13 11 42 42 H 1.09000 * 109.88814 * 242.66171 * 23 22 21 43 43 H 1.09000 * 109.88935 * 3.84616 * 23 22 21 44 44 H 1.08998 * 109.47266 * 61.45462 * 26 24 23 45 45 H 1.08997 * 109.46681 * 181.45682 * 26 24 23 46 46 H 1.08999 * 109.47030 * 301.45216 * 26 24 23 47 47 H 1.08994 * 110.99349 * 82.43779 * 27 24 23 48 48 H 1.08999 * 110.99005 * 206.25759 * 27 24 23 49 49 H 1.09005 * 109.46847 * 58.55298 * 30 28 22 50 50 H 1.09003 * 109.47354 * 178.54605 * 30 28 22 51 51 H 1.08998 * 109.47600 * 298.55106 * 30 28 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 4.1311 2.5196 0.0968 6 6 4.5282 3.3237 -0.9353 7 6 4.4352 3.0023 -2.4048 8 6 5.7217 2.3092 -2.8577 9 1 5.9032 1.4352 -2.2324 10 8 6.8192 3.2167 -2.7380 11 6 5.5809 1.8781 -4.2949 12 1 4.6652 2.0782 -4.8313 13 6 6.6211 1.2284 -4.9248 14 7 6.4980 0.8518 -6.1788 15 14 8.2053 0.8831 -3.9971 16 1 9.1399 2.0238 -4.1717 17 1 7.9049 0.7058 -2.5536 18 1 8.8302 -0.3548 -4.5284 19 7 4.9968 4.4216 -0.4131 20 7 4.9279 4.3642 0.8690 21 6 4.4078 3.2170 1.2366 22 7 4.1768 2.7960 2.5365 23 6 5.1303 1.7416 2.9278 24 6 5.8602 2.2328 4.1956 25 1 6.8132 2.6943 3.9372 26 6 6.0650 1.0814 5.1822 27 6 4.8804 3.2857 4.7771 28 6 4.3022 3.9207 3.4879 29 1 4.9857 4.6743 3.0966 30 6 2.9303 4.5377 3.7670 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0278 -0.0005 34 1 1.6886 1.8463 0.8900 35 1 1.6886 1.8463 -0.8900 36 1 3.8618 0.7078 -0.9249 37 1 3.8526 0.5823 0.8507 38 1 4.3005 3.9242 -2.9705 39 1 3.5859 2.3417 -2.5791 40 1 6.7254 4.0194 -3.2689 41 1 7.2300 0.3950 -6.6221 42 1 4.5936 0.8177 3.1433 43 1 5.8500 1.5765 2.1260 44 1 6.6848 0.3129 4.7203 45 1 6.5581 1.4552 6.0795 46 1 5.0978 0.6558 5.4497 47 1 4.0954 2.8072 5.3627 48 1 5.4127 4.0273 5.3728 49 1 2.2645 3.7753 4.1715 50 1 3.0362 5.3476 4.4888 51 1 2.5127 4.9298 2.8397 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001650414567.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:42:44 Heat of formation + Delta-G solvation = -33.706146 kcal Electronic energy + Delta-G solvation = -31352.699212 eV Core-core repulsion = 27287.879574 eV Total energy + Delta-G solvation = -4064.819637 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 2.59 seconds Orbital eigenvalues (eV) -44.12042 -40.49434 -39.10955 -38.31680 -36.31840 -34.77932 -34.46895 -33.23507 -32.37566 -30.85482 -29.94108 -27.90465 -27.48064 -27.25538 -26.17299 -24.64333 -23.53430 -22.84478 -21.81183 -21.16749 -20.84370 -19.46157 -18.55047 -18.09979 -17.38820 -17.14626 -16.96420 -16.81552 -16.47336 -16.20667 -15.85540 -15.65451 -15.32310 -15.29084 -14.94609 -14.71030 -14.56148 -14.25162 -13.87736 -13.67641 -13.47181 -13.37694 -13.17087 -12.93892 -12.88166 -12.86337 -12.78465 -12.63340 -12.60813 -12.43794 -12.31953 -11.92156 -11.87286 -11.69193 -11.57590 -11.45249 -11.39293 -11.20238 -10.90271 -10.82752 -10.73922 -10.36964 -9.35995 -8.38992 -6.53214 0.65731 1.05565 1.35833 1.39870 1.53459 1.75415 2.33806 2.46174 2.86436 2.96043 3.27195 3.43726 3.47699 3.57733 3.76498 3.81587 3.84551 4.00290 4.05852 4.11090 4.17002 4.28360 4.34018 4.35666 4.43070 4.43371 4.48700 4.52603 4.55111 4.60757 4.64833 4.74544 4.79807 4.82449 4.86191 4.87465 4.93929 5.01111 5.09693 5.11769 5.26185 5.31255 5.34760 5.36088 5.40050 5.49531 5.64283 5.99488 6.05389 6.13573 6.59431 7.12266 7.28507 7.70173 8.74583 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.010242 B = 0.003866 C = 0.003373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2733.141079 B = 7240.115217 C = 8299.384762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.402 6.402 3 C 0.065 3.935 4 C 0.110 3.890 5 N -0.472 5.472 6 C 0.202 3.798 7 C -0.041 4.041 8 C 0.211 3.789 9 H 0.046 0.954 10 O -0.589 6.589 11 C -0.558 4.558 12 H 0.056 0.944 13 C 0.041 3.959 14 N -0.929 5.929 15 Si 0.965 3.035 16 H -0.279 1.279 17 H -0.273 1.273 18 H -0.300 1.300 19 N -0.310 5.310 20 N -0.351 5.351 21 C 0.351 3.649 22 N -0.440 5.440 23 C 0.046 3.954 24 C -0.109 4.109 25 H 0.065 0.935 26 C -0.133 4.133 27 C -0.106 4.106 28 C 0.069 3.931 29 H 0.062 0.938 30 C -0.125 4.125 31 H 0.054 0.946 32 H 0.047 0.953 33 H 0.105 0.895 34 H 0.063 0.937 35 H 0.053 0.947 36 H 0.102 0.898 37 H 0.113 0.887 38 H 0.100 0.900 39 H 0.097 0.903 40 H 0.377 0.623 41 H 0.269 0.731 42 H 0.108 0.892 43 H 0.034 0.966 44 H 0.054 0.946 45 H 0.071 0.929 46 H 0.071 0.929 47 H 0.099 0.901 48 H 0.095 0.905 49 H 0.072 0.928 50 H 0.082 0.918 51 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.299 -0.629 24.946 26.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.321 6.321 3 C -0.013 4.013 4 C -0.013 4.013 5 N -0.167 5.167 6 C -0.067 4.067 7 C -0.081 4.081 8 C 0.152 3.848 9 H 0.063 0.937 10 O -0.396 6.396 11 C -0.595 4.595 12 H 0.074 0.926 13 C -0.160 4.160 14 N -0.568 5.568 15 Si 0.794 3.206 16 H -0.205 1.205 17 H -0.198 1.198 18 H -0.227 1.227 19 N -0.148 5.148 20 N -0.195 5.195 21 C -0.006 4.006 22 N -0.165 5.165 23 C -0.080 4.080 24 C -0.128 4.128 25 H 0.084 0.916 26 C -0.191 4.191 27 C -0.144 4.144 28 C -0.037 4.037 29 H 0.080 0.920 30 C -0.183 4.183 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.124 0.876 34 H 0.081 0.919 35 H 0.071 0.929 36 H 0.120 0.880 37 H 0.132 0.868 38 H 0.119 0.881 39 H 0.115 0.885 40 H 0.225 0.775 41 H 0.078 0.922 42 H 0.126 0.874 43 H 0.053 0.947 44 H 0.074 0.926 45 H 0.090 0.910 46 H 0.090 0.910 47 H 0.117 0.883 48 H 0.114 0.886 49 H 0.091 0.909 50 H 0.101 0.899 51 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -9.832 -0.167 25.334 27.176 hybrid contribution 0.602 -0.499 -1.145 1.386 sum -9.230 -0.665 24.190 25.899 Atomic orbital electron populations 1.22989 0.78527 1.04380 1.00972 1.87781 1.22171 1.26472 1.95639 1.22497 0.91595 0.85713 1.01457 1.21693 0.93456 0.79688 1.06417 1.46103 1.48171 1.16996 1.05465 1.25037 0.99975 0.88211 0.93444 1.20698 1.00898 1.03163 0.83319 1.19594 0.82953 0.88233 0.93998 0.93671 1.86334 1.46872 1.34591 1.71832 1.21725 1.02157 1.38666 0.96967 0.92566 1.25607 1.01551 0.93717 0.95113 1.70028 1.34062 1.40218 1.12500 0.85438 0.80102 0.76329 0.78727 1.20518 1.19779 1.22749 1.73917 1.19414 1.20314 1.01139 1.74404 1.20751 1.18614 1.05710 1.22885 0.99107 0.90293 0.88267 1.60521 1.48643 1.12372 0.95012 1.23144 0.92749 0.94775 0.97339 1.22340 0.98230 0.97769 0.94477 0.91607 1.21690 1.02779 0.96390 0.98233 1.22862 0.98642 0.97771 0.95149 1.22776 0.99133 0.90932 0.90873 0.91977 1.21622 0.94718 1.00972 1.00960 0.92740 0.93470 0.87625 0.91864 0.92865 0.87994 0.86845 0.88125 0.88481 0.77476 0.92166 0.87364 0.94725 0.92645 0.91009 0.91041 0.88286 0.88634 0.90911 0.89887 0.95049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 113.37 1.25 1.68 16 2 O -0.40 -9.15 10.70 -148.98 -1.59 -10.75 16 3 C 0.07 1.52 6.26 71.98 0.45 1.97 16 4 C 0.11 2.91 6.28 86.38 0.54 3.45 16 5 N -0.47 -15.18 2.81 -514.83 -1.45 -16.63 16 6 C 0.20 7.59 7.09 137.64 0.98 8.57 16 7 C -0.04 -1.54 5.02 29.85 0.15 -1.39 16 8 C 0.21 9.59 2.29 29.85 0.07 9.66 16 9 H 0.05 2.16 7.20 -2.39 -0.02 2.14 16 10 O -0.59 -27.29 10.78 -148.98 -1.61 -28.90 16 11 C -0.56 -29.80 9.34 25.60 0.24 -29.56 16 12 H 0.06 3.20 7.99 -2.91 -0.02 3.18 16 13 C 0.04 2.33 5.47 84.65 0.46 2.79 16 14 N -0.93 -55.74 13.96 21.44 0.30 -55.44 16 15 Si 0.97 47.82 26.18 68.60 1.80 49.62 16 16 H -0.28 -13.88 7.11 99.48 0.71 -13.17 16 17 H -0.27 -13.44 6.54 99.48 0.65 -12.79 16 18 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 19 N -0.31 -12.84 12.18 -49.53 -0.60 -13.45 16 20 N -0.35 -13.51 10.71 -58.00 -0.62 -14.13 16 21 C 0.35 11.31 6.66 260.11 1.73 13.04 16 22 N -0.44 -10.70 4.86 -672.30 -3.26 -13.97 16 23 C 0.05 0.97 5.55 86.65 0.48 1.45 16 24 C -0.11 -1.76 3.54 -9.61 -0.03 -1.80 16 25 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 26 C -0.13 -1.50 9.13 71.98 0.66 -0.84 16 27 C -0.11 -1.49 5.94 31.98 0.19 -1.30 16 28 C 0.07 1.47 2.90 45.38 0.13 1.60 16 29 H 0.06 1.68 6.79 -2.39 -0.02 1.67 16 30 C -0.13 -2.25 9.59 71.98 0.69 -1.56 16 31 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.11 1.30 8.14 -2.38 -0.02 1.28 16 34 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.10 2.89 7.70 -2.39 -0.02 2.87 16 37 H 0.11 2.64 7.26 -2.39 -0.02 2.62 16 38 H 0.10 3.71 8.14 -2.39 -0.02 3.69 16 39 H 0.10 3.35 7.81 -2.39 -0.02 3.33 16 40 H 0.38 15.62 9.04 -74.06 -0.67 14.95 16 41 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 42 H 0.11 1.84 7.82 -2.39 -0.02 1.82 16 43 H 0.03 0.91 7.57 -2.39 -0.02 0.89 16 44 H 0.05 0.66 8.14 -2.39 -0.02 0.65 16 45 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 46 H 0.07 0.66 8.13 -2.39 -0.02 0.64 16 47 H 0.10 1.05 7.95 -2.39 -0.02 1.03 16 48 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 49 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 50 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 51 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 Total: -1.00 -71.59 408.42 1.13 -70.46 By element: Atomic # 1 Polarization: 25.23 SS G_CDS: 0.19 Total: 25.41 kcal Atomic # 6 Polarization: -0.22 SS G_CDS: 7.99 Total: 7.77 kcal Atomic # 7 Polarization: -107.97 SS G_CDS: -5.64 Total: -113.61 kcal Atomic # 8 Polarization: -36.45 SS G_CDS: -3.20 Total: -39.65 kcal Atomic # 14 Polarization: 47.82 SS G_CDS: 1.80 Total: 49.62 kcal Total: -71.59 1.13 -70.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650414567.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.753 kcal (2) G-P(sol) polarization free energy of solvation -71.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.59 seconds