Wall clock time and date at job start Tue Mar 31 2020 21:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 110.26902 * 2 1 4 4 C 1.54594 * 110.39292 * 122.14142 * 2 1 3 5 5 C 1.54938 * 102.91921 * 140.91557 * 4 2 1 6 6 N 1.48537 * 103.22728 * 322.59071 * 5 4 2 7 7 C 1.46903 * 111.00014 * 159.71778 * 6 5 4 8 8 C 1.50705 * 109.47046 * 52.60080 * 7 6 5 9 9 O 1.21284 * 119.99591 * 0.02562 * 8 7 6 10 10 N 1.34773 * 120.00044 * 179.97438 * 8 7 6 11 11 C 1.46501 * 120.00101 * 179.97438 * 10 8 7 12 12 H 1.08997 * 110.36955 * 324.28409 * 11 10 8 13 13 C 1.54266 * 110.32047 * 86.46129 * 11 10 8 14 14 C 1.54377 * 105.06190 * 118.89565 * 13 11 10 15 15 N 1.48562 * 104.59407 * 336.14868 * 14 13 11 16 16 C 1.46895 * 111.00142 * 159.03785 * 15 14 13 17 17 C 1.50703 * 109.47036 * 74.57853 * 16 15 14 18 18 O 1.21298 * 119.99939 * 0.02562 * 17 16 15 19 19 N 1.34779 * 120.00134 * 179.97438 * 17 16 15 20 20 C 1.37099 * 119.99975 * 180.02562 * 19 17 16 21 21 H 1.08000 * 119.99717 * 0.02562 * 20 19 17 22 22 C 1.38949 * 119.99954 * 180.02562 * 20 19 17 23 23 N 1.31412 * 120.00163 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 119.99986 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47464 * 59.99344 * 24 22 20 26 26 H 1.48501 * 109.47172 * 179.97438 * 24 22 20 27 27 H 1.48508 * 109.47000 * 299.99456 * 24 22 20 28 28 C 1.48562 * 104.22433 * 39.48055 * 15 14 13 29 29 C 1.47892 * 105.82337 * 39.20411 * 6 5 4 30 30 H 1.08996 * 109.46979 * 182.09134 * 1 2 3 31 31 H 1.08997 * 109.46896 * 302.08881 * 1 2 3 32 32 H 1.08995 * 109.47201 * 62.09016 * 1 2 3 33 33 H 1.08995 * 110.72374 * 259.27636 * 4 2 1 34 34 H 1.08997 * 110.72415 * 22.38374 * 4 2 1 35 35 H 1.08993 * 110.66996 * 204.15085 * 5 4 2 36 36 H 1.09008 * 110.66536 * 81.01839 * 5 4 2 37 37 H 1.08996 * 109.47229 * 292.59988 * 7 6 5 38 38 H 1.08996 * 109.46832 * 172.59948 * 7 6 5 39 39 H 0.96998 * 120.00053 * 0.02562 * 10 8 7 40 40 H 1.09005 * 110.32054 * 237.79480 * 13 11 10 41 41 H 1.09003 * 110.32265 * 359.97438 * 13 11 10 42 42 H 1.09000 * 110.40820 * 94.92490 * 14 13 11 43 43 H 1.08989 * 110.41015 * 217.36711 * 14 13 11 44 44 H 1.09001 * 109.47512 * 194.57738 * 16 15 14 45 45 H 1.09000 * 109.47060 * 314.58314 * 16 15 14 46 46 H 0.96997 * 119.99716 * 0.02562 * 19 17 16 47 47 H 0.96993 * 120.00436 * 180.02562 * 23 22 20 48 48 H 1.08998 * 110.41528 * 201.73764 * 28 15 14 49 49 H 1.08997 * 110.50874 * 79.34552 * 28 15 14 50 50 H 1.09006 * 109.92230 * 94.02172 * 29 6 5 51 51 H 1.08998 * 109.92314 * 215.32180 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0688 -0.7709 1.2270 5 6 3.2882 -1.5325 0.6495 6 7 2.8333 -1.9215 -0.7100 7 6 3.9769 -2.2222 -1.5817 8 6 4.8702 -3.2319 -0.9081 9 8 4.5822 -3.6592 0.1898 10 7 5.9884 -3.6608 -1.5262 11 6 6.8571 -4.6419 -0.8712 12 1 6.8808 -4.4691 0.2047 13 6 6.3705 -6.0743 -1.1732 14 6 7.5438 -6.7483 -1.9163 15 7 8.3091 -5.6208 -2.5081 16 6 9.6877 -6.0243 -2.8156 17 6 9.6932 -6.8995 -4.0424 18 8 8.6511 -7.1610 -4.6055 19 7 10.8560 -7.3909 -4.5145 20 6 10.8610 -8.1867 -5.6309 21 1 9.9332 -8.4194 -6.1322 22 6 12.0598 -8.6936 -6.1173 23 7 13.1888 -8.4100 -5.5076 24 14 12.0667 -9.7773 -7.6388 25 1 11.5043 -9.0221 -8.7871 26 1 13.4604 -10.1849 -7.9499 27 1 11.2410 -10.9862 -7.3893 28 6 8.2835 -4.5709 -1.4574 29 6 2.0645 -0.7672 -1.2236 30 1 -0.3633 -1.0269 0.0375 31 1 -0.3633 0.5459 0.8707 32 1 -0.3633 0.4810 -0.9081 33 1 2.3810 -0.0800 2.0100 34 1 1.3196 -1.4667 1.6047 35 1 3.5091 -2.4158 1.2487 36 1 4.1582 -0.8782 0.5915 37 1 4.5397 -1.3082 -1.7710 38 1 3.6163 -2.6292 -2.5264 39 1 6.2184 -3.3193 -2.4045 40 1 6.1553 -6.6045 -0.2454 41 1 5.4850 -6.0473 -1.8084 42 1 8.1672 -7.3051 -1.2167 43 1 7.1693 -7.4065 -2.7002 44 1 10.2936 -5.1371 -2.9995 45 1 10.1008 -6.5780 -1.9724 46 1 11.6893 -7.1815 -4.0644 47 1 14.0257 -8.7636 -5.8473 48 1 8.4660 -3.5898 -1.8957 49 1 9.0227 -4.7850 -0.6855 50 1 2.7148 -0.1203 -1.8125 51 1 1.2326 -1.1174 -1.8346 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001665487292.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:44:43 Heat of formation + Delta-G solvation = -53.347371 kcal Electronic energy + Delta-G solvation = -29136.741466 eV Core-core repulsion = 25071.070121 eV Total energy + Delta-G solvation = -4065.671345 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.47102 -39.33784 -38.43471 -37.42678 -34.42425 -33.79080 -33.66936 -31.42298 -30.96001 -30.03236 -28.75130 -27.66154 -26.43053 -25.08235 -24.17301 -21.94825 -21.26809 -20.85346 -20.46369 -20.30086 -19.18810 -17.88900 -17.37465 -16.78820 -16.10396 -15.93495 -15.78731 -15.62519 -15.09187 -14.67848 -14.50060 -14.27877 -14.07104 -13.83190 -13.78101 -13.59837 -13.49795 -13.17993 -12.96457 -12.46895 -12.36140 -12.15142 -12.02724 -11.91524 -11.77957 -11.67007 -11.49425 -11.47011 -11.20780 -11.10691 -11.05660 -10.90398 -10.88062 -10.69841 -10.44345 -10.21418 -9.71642 -9.48633 -9.17908 -8.68800 -8.53094 -8.05487 -7.95285 -6.41607 -3.82448 2.50180 2.91195 3.19910 3.25580 3.29894 3.76974 3.90437 4.00480 4.25422 4.26227 4.35064 4.47969 4.51015 4.68624 4.77783 4.91185 5.00225 5.03915 5.07387 5.12755 5.18843 5.20361 5.23701 5.27660 5.32942 5.40739 5.43477 5.53492 5.61160 5.66014 5.69024 5.72353 5.75669 5.78754 5.80249 5.94642 5.96214 5.99946 6.16670 6.26838 6.39448 6.47290 6.59636 6.62158 7.04793 7.14225 7.42500 7.54917 8.06035 8.13693 8.62125 9.18360 9.54677 10.06842 10.76134 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.031803 B = 0.001676 C = 0.001639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.205270 B =16697.980004 C =17080.439823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.105 4.105 3 H 0.072 0.928 4 C -0.122 4.122 5 C 0.032 3.968 6 N -0.500 5.500 7 C 0.026 3.974 8 C 0.514 3.486 9 O -0.529 6.529 10 N -0.716 5.716 11 C 0.146 3.854 12 H 0.093 0.907 13 C -0.131 4.131 14 C 0.037 3.963 15 N -0.483 5.483 16 C 0.034 3.966 17 C 0.445 3.555 18 O -0.577 6.577 19 N -0.566 5.566 20 C -0.299 4.299 21 H 0.102 0.898 22 C 0.022 3.978 23 N -0.903 5.903 24 Si 0.930 3.070 25 H -0.274 1.274 26 H -0.285 1.285 27 H -0.274 1.274 28 C 0.021 3.979 29 C 0.037 3.963 30 H 0.060 0.940 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.113 0.887 36 H 0.035 0.965 37 H 0.064 0.936 38 H 0.107 0.893 39 H 0.405 0.595 40 H 0.072 0.928 41 H 0.076 0.924 42 H 0.040 0.960 43 H 0.097 0.903 44 H 0.088 0.912 45 H 0.052 0.948 46 H 0.391 0.609 47 H 0.272 0.728 48 H 0.086 0.914 49 H 0.056 0.944 50 H 0.044 0.956 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.602 17.235 12.907 27.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.124 4.124 3 H 0.091 0.909 4 C -0.160 4.160 5 C -0.095 4.095 6 N -0.224 5.224 7 C -0.106 4.106 8 C 0.300 3.700 9 O -0.406 6.406 10 N -0.368 5.368 11 C 0.041 3.959 12 H 0.111 0.889 13 C -0.171 4.171 14 C -0.091 4.091 15 N -0.207 5.207 16 C -0.098 4.098 17 C 0.230 3.770 18 O -0.460 6.460 19 N -0.203 5.203 20 C -0.429 4.429 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.544 5.544 24 Si 0.758 3.242 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 C -0.108 4.108 29 C -0.091 4.091 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.094 0.906 35 H 0.131 0.869 36 H 0.054 0.946 37 H 0.082 0.918 38 H 0.125 0.875 39 H 0.240 0.760 40 H 0.091 0.909 41 H 0.095 0.905 42 H 0.058 0.942 43 H 0.115 0.885 44 H 0.106 0.894 45 H 0.070 0.930 46 H 0.225 0.775 47 H 0.081 0.919 48 H 0.104 0.896 49 H 0.074 0.926 50 H 0.062 0.938 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -17.842 16.390 12.762 27.383 hybrid contribution 1.863 0.205 -0.400 1.917 sum -15.978 16.595 12.362 26.144 Atomic orbital electron populations 1.21823 0.94291 1.02250 1.01507 1.22001 0.96543 0.98908 0.94911 0.90927 1.22631 0.97987 0.98648 0.96752 1.23521 0.95380 1.00142 0.90505 1.64681 1.19291 1.36235 1.02242 1.22248 0.92236 0.97982 0.98115 1.20438 0.81123 0.82460 0.85984 1.90632 1.71921 1.57724 1.20276 1.46063 1.24173 1.44480 1.22132 1.21638 0.88721 0.88309 0.97222 0.88943 1.22762 0.99112 0.94694 1.00496 1.23179 0.94278 0.93848 0.97773 1.65157 1.12069 1.07866 1.35631 1.22062 0.90145 0.99782 0.97805 1.19685 0.84860 0.85170 0.87246 1.90514 1.31736 1.62683 1.61097 1.41852 1.07239 1.44572 1.26598 1.19645 0.94971 1.24580 1.03671 0.87998 1.25246 0.94710 0.98509 0.99442 1.69599 0.98167 1.45697 1.40957 0.85924 0.77040 0.80055 0.81227 1.19921 1.20995 1.19936 1.23441 0.95145 0.97916 0.94287 1.23052 0.98159 0.90901 0.96948 0.92071 0.92685 0.92707 0.91323 0.90565 0.86947 0.94625 0.91828 0.87529 0.75987 0.90930 0.90501 0.94169 0.88450 0.89351 0.93027 0.77547 0.91855 0.89573 0.92563 0.93763 0.89959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.83 8.90 37.16 0.33 -0.50 16 2 C -0.10 -0.71 3.58 -89.26 -0.32 -1.03 16 3 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 4 C -0.12 -0.95 6.61 -24.87 -0.16 -1.11 16 5 C 0.03 0.31 5.30 -1.90 -0.01 0.30 16 6 N -0.50 -4.90 5.26 -231.89 -1.22 -6.12 16 7 C 0.03 0.22 5.52 -4.97 -0.03 0.20 16 8 C 0.51 5.73 7.53 -10.98 -0.08 5.65 16 9 O -0.53 -7.53 13.22 5.55 0.07 -7.46 16 10 N -0.72 -7.34 5.00 -52.46 -0.26 -7.60 16 11 C 0.15 1.67 3.36 -66.54 -0.22 1.44 16 12 H 0.09 1.07 7.65 -51.93 -0.40 0.67 16 13 C -0.13 -1.70 6.78 -25.35 -0.17 -1.87 16 14 C 0.04 0.57 5.92 -2.18 -0.01 0.56 16 15 N -0.48 -7.55 4.98 -231.42 -1.15 -8.71 16 16 C 0.03 0.58 5.32 -4.98 -0.03 0.55 16 17 C 0.45 10.34 7.63 -10.98 -0.08 10.25 16 18 O -0.58 -15.39 14.80 5.54 0.08 -15.30 16 19 N -0.57 -14.18 5.29 -10.96 -0.06 -14.24 16 20 C -0.30 -8.29 9.68 -14.93 -0.14 -8.43 16 21 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 22 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -24.40 13.05 55.50 0.72 -23.68 16 24 Si 0.93 20.98 29.55 -169.99 -5.02 15.96 16 25 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 26 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 27 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 28 C 0.02 0.24 6.06 -2.18 -0.01 0.23 16 29 C 0.04 0.28 6.36 -2.76 -0.02 0.27 16 30 H 0.06 0.40 8.11 -51.93 -0.42 -0.02 16 31 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.08 0.62 7.85 -51.93 -0.41 0.22 16 35 H 0.11 1.37 5.97 -51.93 -0.31 1.06 16 36 H 0.04 0.34 8.02 -51.92 -0.42 -0.08 16 37 H 0.06 0.45 7.81 -51.93 -0.41 0.04 16 38 H 0.11 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.41 3.60 8.55 -40.82 -0.35 3.25 16 40 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.08 1.07 7.95 -51.93 -0.41 0.65 16 42 H 0.04 0.59 7.75 -51.93 -0.40 0.19 16 43 H 0.10 1.80 7.24 -51.93 -0.38 1.42 16 44 H 0.09 1.36 8.08 -51.93 -0.42 0.94 16 45 H 0.05 0.81 7.77 -51.93 -0.40 0.41 16 46 H 0.39 9.37 7.90 -40.82 -0.32 9.05 16 47 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 48 H 0.09 0.89 7.99 -51.93 -0.41 0.48 16 49 H 0.06 0.60 8.00 -51.93 -0.42 0.18 16 50 H 0.04 0.30 7.57 -51.93 -0.39 -0.10 16 51 H 0.08 0.61 7.68 -51.93 -0.40 0.21 16 LS Contribution 402.73 15.07 6.07 6.07 Total: -1.00 -32.45 402.73 -10.54 -42.99 By element: Atomic # 1 Polarization: 19.80 SS G_CDS: -8.71 Total: 11.09 kcal Atomic # 6 Polarization: 8.06 SS G_CDS: -1.06 Total: 7.00 kcal Atomic # 7 Polarization: -58.37 SS G_CDS: -1.97 Total: -60.34 kcal Atomic # 8 Polarization: -22.92 SS G_CDS: 0.16 Total: -22.77 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -32.45 -10.54 -42.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665487292.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.360 kcal (2) G-P(sol) polarization free energy of solvation -32.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds