Wall clock time and date at job start Tue Mar 31 2020 21:44:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 110.26902 * 2 1 4 4 C 1.54594 * 110.39292 * 122.14142 * 2 1 3 5 5 C 1.54938 * 102.91921 * 140.91557 * 4 2 1 6 6 N 1.48537 * 103.22728 * 322.59071 * 5 4 2 7 7 C 1.46903 * 111.00014 * 159.71778 * 6 5 4 8 8 C 1.50705 * 109.47046 * 52.60080 * 7 6 5 9 9 O 1.21284 * 119.99591 * 0.02562 * 8 7 6 10 10 N 1.34773 * 120.00044 * 179.97438 * 8 7 6 11 11 C 1.46501 * 120.00101 * 179.97438 * 10 8 7 12 12 H 1.08997 * 110.36955 * 324.28409 * 11 10 8 13 13 C 1.54266 * 110.32047 * 86.46129 * 11 10 8 14 14 C 1.54377 * 105.06190 * 118.89565 * 13 11 10 15 15 N 1.48562 * 104.59407 * 336.14868 * 14 13 11 16 16 C 1.46895 * 111.00142 * 159.03785 * 15 14 13 17 17 C 1.50703 * 109.47036 * 74.57853 * 16 15 14 18 18 O 1.21298 * 119.99939 * 0.02562 * 17 16 15 19 19 N 1.34779 * 120.00134 * 179.97438 * 17 16 15 20 20 C 1.37099 * 119.99975 * 180.02562 * 19 17 16 21 21 H 1.08000 * 119.99717 * 0.02562 * 20 19 17 22 22 C 1.38949 * 119.99954 * 180.02562 * 20 19 17 23 23 N 1.31412 * 120.00163 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 119.99986 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47464 * 59.99344 * 24 22 20 26 26 H 1.48501 * 109.47172 * 179.97438 * 24 22 20 27 27 H 1.48508 * 109.47000 * 299.99456 * 24 22 20 28 28 C 1.48562 * 104.22433 * 39.48055 * 15 14 13 29 29 C 1.47892 * 105.82337 * 39.20411 * 6 5 4 30 30 H 1.08996 * 109.46979 * 182.09134 * 1 2 3 31 31 H 1.08997 * 109.46896 * 302.08881 * 1 2 3 32 32 H 1.08995 * 109.47201 * 62.09016 * 1 2 3 33 33 H 1.08995 * 110.72374 * 259.27636 * 4 2 1 34 34 H 1.08997 * 110.72415 * 22.38374 * 4 2 1 35 35 H 1.08993 * 110.66996 * 204.15085 * 5 4 2 36 36 H 1.09008 * 110.66536 * 81.01839 * 5 4 2 37 37 H 1.08996 * 109.47229 * 292.59988 * 7 6 5 38 38 H 1.08996 * 109.46832 * 172.59948 * 7 6 5 39 39 H 0.96998 * 120.00053 * 0.02562 * 10 8 7 40 40 H 1.09005 * 110.32054 * 237.79480 * 13 11 10 41 41 H 1.09003 * 110.32265 * 359.97438 * 13 11 10 42 42 H 1.09000 * 110.40820 * 94.92490 * 14 13 11 43 43 H 1.08989 * 110.41015 * 217.36711 * 14 13 11 44 44 H 1.09001 * 109.47512 * 194.57738 * 16 15 14 45 45 H 1.09000 * 109.47060 * 314.58314 * 16 15 14 46 46 H 0.96997 * 119.99716 * 0.02562 * 19 17 16 47 47 H 0.96993 * 120.00436 * 180.02562 * 23 22 20 48 48 H 1.08998 * 110.41528 * 201.73764 * 28 15 14 49 49 H 1.08997 * 110.50874 * 79.34552 * 28 15 14 50 50 H 1.09006 * 109.92230 * 94.02172 * 29 6 5 51 51 H 1.08998 * 109.92314 * 215.32180 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0688 -0.7709 1.2270 5 6 3.2882 -1.5325 0.6495 6 7 2.8333 -1.9215 -0.7100 7 6 3.9769 -2.2222 -1.5817 8 6 4.8702 -3.2319 -0.9081 9 8 4.5822 -3.6592 0.1898 10 7 5.9884 -3.6608 -1.5262 11 6 6.8571 -4.6419 -0.8712 12 1 6.8808 -4.4691 0.2047 13 6 6.3705 -6.0743 -1.1732 14 6 7.5438 -6.7483 -1.9163 15 7 8.3091 -5.6208 -2.5081 16 6 9.6877 -6.0243 -2.8156 17 6 9.6932 -6.8995 -4.0424 18 8 8.6511 -7.1610 -4.6055 19 7 10.8560 -7.3909 -4.5145 20 6 10.8610 -8.1867 -5.6309 21 1 9.9332 -8.4194 -6.1322 22 6 12.0598 -8.6936 -6.1173 23 7 13.1888 -8.4100 -5.5076 24 14 12.0667 -9.7773 -7.6388 25 1 11.5043 -9.0221 -8.7871 26 1 13.4604 -10.1849 -7.9499 27 1 11.2410 -10.9862 -7.3893 28 6 8.2835 -4.5709 -1.4574 29 6 2.0645 -0.7672 -1.2236 30 1 -0.3633 -1.0269 0.0375 31 1 -0.3633 0.5459 0.8707 32 1 -0.3633 0.4810 -0.9081 33 1 2.3810 -0.0800 2.0100 34 1 1.3196 -1.4667 1.6047 35 1 3.5091 -2.4158 1.2487 36 1 4.1582 -0.8782 0.5915 37 1 4.5397 -1.3082 -1.7710 38 1 3.6163 -2.6292 -2.5264 39 1 6.2184 -3.3193 -2.4045 40 1 6.1553 -6.6045 -0.2454 41 1 5.4850 -6.0473 -1.8084 42 1 8.1672 -7.3051 -1.2167 43 1 7.1693 -7.4065 -2.7002 44 1 10.2936 -5.1371 -2.9995 45 1 10.1008 -6.5780 -1.9724 46 1 11.6893 -7.1815 -4.0644 47 1 14.0257 -8.7636 -5.8473 48 1 8.4660 -3.5898 -1.8957 49 1 9.0227 -4.7850 -0.6855 50 1 2.7148 -0.1203 -1.8125 51 1 1.2326 -1.1174 -1.8346 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001665487292.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:44:42 Heat of formation + Delta-G solvation = -79.137339 kcal Electronic energy + Delta-G solvation = -29137.859803 eV Core-core repulsion = 25071.070121 eV Total energy + Delta-G solvation = -4066.789682 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.35259 -40.49155 -39.62480 -38.73264 -35.98295 -35.26534 -34.31599 -33.28264 -32.25789 -30.70864 -29.72401 -28.63913 -27.72391 -26.06131 -25.59162 -22.71018 -22.51073 -21.71267 -21.30946 -20.95501 -20.93350 -19.86477 -18.24057 -17.73273 -17.63541 -16.84102 -16.74904 -16.57590 -16.42797 -16.09332 -15.86967 -15.55423 -15.39032 -14.93664 -14.73247 -14.42527 -14.37830 -14.09435 -14.01921 -13.67561 -13.51103 -13.37859 -13.10253 -12.98798 -12.94645 -12.81106 -12.62921 -12.50649 -12.41671 -12.33300 -12.12898 -12.08935 -11.88579 -11.73051 -11.63260 -11.48276 -11.46185 -10.59395 -10.35258 -10.04968 -9.98553 -9.38604 -9.34804 -8.45065 -5.93469 1.40208 1.41981 1.52590 1.64561 2.08760 2.10753 2.29365 2.81235 3.09714 3.21736 3.40374 3.50193 3.68636 3.72657 3.79699 3.95856 3.99523 4.14649 4.27619 4.27942 4.30627 4.36019 4.41607 4.44277 4.49541 4.54871 4.57006 4.66763 4.67590 4.69374 4.75433 4.87338 4.89043 4.95634 5.05226 5.05886 5.13915 5.20086 5.24978 5.27225 5.41908 5.44813 5.57271 5.83431 5.88763 5.92472 5.99085 6.08276 6.61085 6.63016 7.15164 7.29989 7.59292 8.15740 8.72085 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.031803 B = 0.001676 C = 0.001639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.205270 B =16697.980004 C =17080.439823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.102 4.102 3 H 0.084 0.916 4 C -0.120 4.120 5 C 0.035 3.965 6 N -0.522 5.522 7 C 0.029 3.971 8 C 0.512 3.488 9 O -0.563 6.563 10 N -0.709 5.709 11 C 0.153 3.847 12 H 0.097 0.903 13 C -0.123 4.123 14 C 0.039 3.961 15 N -0.503 5.503 16 C 0.047 3.953 17 C 0.442 3.558 18 O -0.617 6.617 19 N -0.576 5.576 20 C -0.333 4.333 21 H 0.077 0.923 22 C -0.012 4.012 23 N -0.920 5.920 24 Si 0.991 3.009 25 H -0.272 1.272 26 H -0.270 1.270 27 H -0.273 1.273 28 C 0.028 3.972 29 C 0.037 3.963 30 H 0.049 0.951 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.080 0.920 34 H 0.066 0.934 35 H 0.084 0.916 36 H 0.037 0.963 37 H 0.086 0.914 38 H 0.117 0.883 39 H 0.413 0.587 40 H 0.080 0.920 41 H 0.062 0.938 42 H 0.047 0.953 43 H 0.057 0.943 44 H 0.115 0.885 45 H 0.072 0.928 46 H 0.396 0.604 47 H 0.277 0.723 48 H 0.105 0.895 49 H 0.076 0.924 50 H 0.057 0.943 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.338 19.042 13.162 28.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.121 4.121 3 H 0.103 0.897 4 C -0.158 4.158 5 C -0.093 4.093 6 N -0.247 5.247 7 C -0.102 4.102 8 C 0.299 3.701 9 O -0.442 6.442 10 N -0.362 5.362 11 C 0.047 3.953 12 H 0.115 0.885 13 C -0.162 4.162 14 C -0.089 4.089 15 N -0.227 5.227 16 C -0.085 4.085 17 C 0.229 3.771 18 O -0.502 6.502 19 N -0.214 5.214 20 C -0.463 4.463 21 H 0.095 0.905 22 C -0.212 4.212 23 N -0.561 5.561 24 Si 0.815 3.185 25 H -0.198 1.198 26 H -0.195 1.195 27 H -0.199 1.199 28 C -0.099 4.099 29 C -0.091 4.091 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.099 0.901 34 H 0.085 0.915 35 H 0.102 0.898 36 H 0.055 0.945 37 H 0.104 0.896 38 H 0.135 0.865 39 H 0.250 0.750 40 H 0.099 0.901 41 H 0.081 0.919 42 H 0.065 0.935 43 H 0.075 0.925 44 H 0.133 0.867 45 H 0.090 0.910 46 H 0.230 0.770 47 H 0.086 0.914 48 H 0.123 0.877 49 H 0.094 0.906 50 H 0.075 0.925 51 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -17.563 18.224 13.019 28.462 hybrid contribution 1.732 -0.358 -0.452 1.825 sum -15.831 17.866 12.567 26.977 Atomic orbital electron populations 1.21795 0.93693 1.01778 1.02318 1.22016 0.97024 0.99158 0.93860 0.89726 1.22614 0.97004 0.98632 0.97541 1.23366 0.96260 0.99097 0.90542 1.64639 1.19945 1.37621 1.02471 1.22279 0.91905 0.98173 0.97883 1.20893 0.81191 0.82434 0.85562 1.90635 1.72699 1.59001 1.21830 1.46016 1.23870 1.43929 1.22364 1.21531 0.88824 0.87419 0.97526 0.88547 1.22666 0.97532 0.95890 1.00132 1.23046 0.95299 0.93789 0.96749 1.65073 1.11110 1.08627 1.37900 1.21926 0.91740 0.99674 0.95152 1.20799 0.83559 0.84472 0.88240 1.90490 1.33035 1.63949 1.62754 1.41922 1.08088 1.44930 1.26413 1.19607 0.94626 1.26686 1.05359 0.90451 1.25990 0.94050 0.99216 1.01909 1.69658 0.98517 1.46052 1.41912 0.85019 0.77581 0.78188 0.77723 1.19763 1.19495 1.19877 1.23496 0.95505 0.97214 0.93716 1.23104 0.98134 0.90473 0.97364 0.93167 0.92005 0.91790 0.90147 0.91473 0.89795 0.94483 0.89581 0.86464 0.75011 0.90133 0.91902 0.93468 0.92455 0.86746 0.90988 0.77038 0.91361 0.87707 0.90624 0.92501 0.89909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 8.90 71.98 0.64 -0.78 16 2 C -0.10 -1.20 3.58 -9.91 -0.04 -1.23 16 3 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 4 C -0.12 -1.75 6.61 31.80 0.21 -1.54 16 5 C 0.03 0.66 5.30 86.65 0.46 1.12 16 6 N -0.52 -9.70 5.26 -887.57 -4.67 -14.37 16 7 C 0.03 0.46 5.52 85.56 0.47 0.93 16 8 C 0.51 10.90 7.53 87.66 0.66 11.56 16 9 O -0.56 -15.96 13.22 -3.04 -0.04 -16.00 16 10 N -0.71 -13.43 5.00 -438.28 -2.19 -15.62 16 11 C 0.15 3.22 3.36 45.89 0.15 3.37 16 12 H 0.10 2.04 7.65 -2.39 -0.02 2.02 16 13 C -0.12 -3.12 6.78 31.49 0.21 -2.91 16 14 C 0.04 1.21 5.92 86.45 0.51 1.72 16 15 N -0.50 -15.04 4.98 -886.07 -4.41 -19.45 16 16 C 0.05 1.52 5.32 85.56 0.46 1.98 16 17 C 0.44 20.69 7.63 87.66 0.67 21.36 16 18 O -0.62 -33.87 14.80 -3.08 -0.05 -33.91 16 19 N -0.58 -29.23 5.29 -306.97 -1.62 -30.85 16 20 C -0.33 -18.86 9.68 84.04 0.81 -18.05 16 21 H 0.08 4.68 7.16 -2.91 -0.02 4.66 16 22 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 23 N -0.92 -49.36 13.05 21.66 0.28 -49.07 16 24 Si 0.99 42.88 29.55 68.60 2.03 44.91 16 25 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 26 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 27 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 28 C 0.03 0.58 6.06 86.45 0.52 1.10 16 29 C 0.04 0.49 6.36 86.45 0.55 1.04 16 30 H 0.05 0.62 8.11 -2.39 -0.02 0.60 16 31 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.07 1.09 7.85 -2.39 -0.02 1.07 16 35 H 0.08 2.10 5.97 -2.39 -0.01 2.09 16 36 H 0.04 0.67 8.02 -2.38 -0.02 0.65 16 37 H 0.09 0.99 7.81 -2.39 -0.02 0.97 16 38 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.41 6.52 8.55 -92.71 -0.79 5.73 16 40 H 0.08 1.90 8.14 -2.38 -0.02 1.88 16 41 H 0.06 1.76 7.95 -2.39 -0.02 1.75 16 42 H 0.05 1.36 7.75 -2.39 -0.02 1.34 16 43 H 0.06 2.22 7.24 -2.39 -0.02 2.20 16 44 H 0.11 3.18 8.08 -2.39 -0.02 3.16 16 45 H 0.07 2.09 7.77 -2.39 -0.02 2.08 16 46 H 0.40 19.00 7.90 -92.71 -0.73 18.27 16 47 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16 48 H 0.10 1.79 7.99 -2.39 -0.02 1.77 16 49 H 0.08 1.31 8.00 -2.39 -0.02 1.29 16 50 H 0.06 0.62 7.57 -2.38 -0.02 0.60 16 51 H 0.08 1.09 7.68 -2.39 -0.02 1.08 16 Total: -1.00 -71.87 402.73 -4.49 -76.36 By element: Atomic # 1 Polarization: 39.09 SS G_CDS: -0.59 Total: 38.50 kcal Atomic # 6 Polarization: 12.74 SS G_CDS: 6.77 Total: 19.50 kcal Atomic # 7 Polarization: -116.75 SS G_CDS: -12.61 Total: -129.36 kcal Atomic # 8 Polarization: -49.83 SS G_CDS: -0.09 Total: -49.91 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Total: -71.87 -4.49 -76.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665487292.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.780 kcal (2) G-P(sol) polarization free energy of solvation -71.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds