Wall clock time and date at job start Tue Mar 31 2020 20:39:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53009 * 109.46958 * 2 1 4 4 N 1.46493 * 109.46824 * 179.97438 * 3 2 1 5 5 C 1.36945 * 119.99909 * 179.97438 * 4 3 2 6 6 H 1.07998 * 119.99522 * 0.02562 * 5 4 3 7 7 C 1.38805 * 120.00196 * 180.02562 * 5 4 3 8 8 N 1.31622 * 120.00056 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00223 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47066 * 59.99494 * 9 7 5 11 11 H 1.48498 * 109.47281 * 179.97438 * 9 7 5 12 12 H 1.48506 * 109.46713 * 299.99694 * 9 7 5 13 13 N 1.46498 * 109.47039 * 119.99818 * 2 1 3 14 14 C 1.34777 * 120.00023 * 304.29638 * 13 2 1 15 15 O 1.21287 * 120.00179 * 354.99137 * 14 13 2 16 16 C 1.50696 * 119.99995 * 174.98718 * 14 13 2 17 17 N 1.46495 * 109.47238 * 179.97438 * 16 14 13 18 18 C 1.34781 * 119.99955 * 180.02562 * 17 16 14 19 19 O 1.21585 * 120.00059 * 0.02562 * 18 17 16 20 20 N 1.34781 * 120.00025 * 179.97438 * 18 17 16 21 21 C 1.47027 * 125.64566 * 359.69755 * 20 18 17 22 22 C 1.54324 * 107.27036 * 181.32294 * 21 20 18 23 23 C 1.55160 * 102.94198 * 22.18943 * 22 21 20 24 24 C 1.47418 * 125.64975 * 179.97438 * 20 18 17 25 25 C 1.52994 * 109.47157 * 240.00361 * 2 1 3 26 26 C 1.53000 * 117.50124 * 12.73584 * 25 2 1 27 27 C 1.53002 * 117.49747 * 304.07485 * 25 2 1 28 28 H 1.08996 * 109.47068 * 300.00079 * 1 2 3 29 29 H 1.09006 * 109.46645 * 59.99858 * 1 2 3 30 30 H 1.08991 * 109.46928 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46877 * 300.00072 * 3 2 1 32 32 H 1.09004 * 109.47103 * 59.99779 * 3 2 1 33 33 H 0.97001 * 120.00731 * 0.02562 * 4 3 2 34 34 H 0.97005 * 120.00135 * 180.02562 * 8 7 5 35 35 H 0.96994 * 119.99784 * 124.30089 * 13 2 1 36 36 H 1.09004 * 109.46911 * 60.00624 * 16 14 13 37 37 H 1.08997 * 109.47786 * 300.00356 * 16 14 13 38 38 H 0.97002 * 120.00424 * 0.02562 * 17 16 14 39 39 H 1.09000 * 109.88002 * 300.73690 * 21 20 18 40 40 H 1.09000 * 109.88419 * 61.90375 * 21 20 18 41 41 H 1.09006 * 110.71778 * 263.82770 * 22 21 20 42 42 H 1.08995 * 110.72192 * 140.55595 * 22 21 20 43 43 H 1.09001 * 111.00442 * 206.43119 * 23 22 21 44 44 H 1.09000 * 111.00513 * 82.57492 * 23 22 21 45 45 H 1.08996 * 110.37252 * 274.44667 * 24 20 18 46 46 H 1.09001 * 110.36817 * 36.66627 * 24 20 18 47 47 H 1.09000 * 115.54836 * 158.41028 * 25 2 1 48 48 H 1.09000 * 117.49477 * 0.02562 * 26 25 2 49 49 H 1.08999 * 117.49719 * 145.02937 * 26 25 2 50 50 H 1.09001 * 117.50023 * 214.98401 * 27 25 2 51 51 H 1.09001 * 117.49851 * 0.02562 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1897 2.6285 0.0002 6 1 3.6496 3.5638 -0.0002 7 6 5.5777 2.6286 0.0002 8 7 6.2359 1.4887 0.0002 9 14 6.5118 4.2463 0.0004 10 1 6.1529 5.0249 1.2129 11 1 7.9718 3.9750 0.0011 12 1 6.1531 5.0250 -1.2122 13 7 2.0184 -0.6906 1.1962 14 6 1.6229 -0.2827 2.4184 15 8 0.9364 0.7105 2.5336 16 6 2.0336 -1.0609 3.6418 17 7 1.4819 -0.4183 4.8372 18 6 1.7214 -0.9428 6.0555 19 8 2.3957 -1.9488 6.1624 20 7 1.2143 -0.3513 7.1553 21 6 0.3924 0.8677 7.1709 22 6 0.0729 1.1860 8.6467 23 6 1.2034 0.4502 9.4135 24 6 1.3966 -0.8163 8.5423 25 6 2.0400 -0.7211 -1.2492 26 6 1.0275 -1.0156 -2.3578 27 6 1.5586 -2.1544 -1.4835 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 3.9901 0.6026 0.0006 34 1 7.2060 1.4887 0.0006 35 1 2.6263 -1.4412 1.1085 36 1 3.1213 -1.0823 3.7106 37 1 1.6540 -2.0800 3.5687 38 1 0.9443 0.3845 4.7520 39 1 0.9463 1.6938 6.7250 40 1 -0.5324 0.6983 6.6195 41 1 -0.9034 0.7886 8.9243 42 1 0.1192 2.2597 8.8284 43 1 0.8838 0.1857 10.4215 44 1 2.1132 1.0501 9.4386 45 1 0.6470 -1.5670 8.7925 46 1 2.3991 -1.2224 8.6776 47 1 3.0589 -0.4769 -1.5500 48 1 -0.0019 -0.6952 -2.1973 49 1 1.3804 -0.9657 -3.3879 50 1 2.2606 -2.8531 -1.9388 51 1 0.8782 -2.5834 -0.7479 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001665996127.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:46 Heat of formation + Delta-G solvation = -16.047138 kcal Electronic energy + Delta-G solvation = -30428.236903 eV Core-core repulsion = 26364.183018 eV Total energy + Delta-G solvation = -4064.053885 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.51919 -39.94863 -38.08104 -37.42329 -34.79647 -34.25693 -33.51081 -31.88579 -31.22704 -29.82100 -29.25285 -27.29709 -25.82787 -23.86907 -23.29357 -22.36261 -22.06172 -21.46715 -20.29575 -20.03012 -18.85346 -18.53020 -17.16413 -16.89439 -16.72678 -16.12843 -15.61992 -15.38029 -15.25585 -14.74379 -14.53915 -14.38841 -13.88163 -13.83361 -13.52754 -13.33259 -13.19887 -13.02260 -12.72064 -12.65799 -12.42284 -12.24104 -12.11872 -11.89946 -11.65188 -11.50857 -11.38162 -11.07391 -11.06501 -10.85653 -10.79253 -10.74300 -10.26508 -10.19524 -10.11070 -9.84673 -9.66065 -9.43510 -9.20590 -8.78471 -8.68738 -8.61183 -6.83910 -5.72813 -2.99289 2.41705 2.84810 3.17336 3.30605 3.46666 3.50940 3.51986 3.92358 4.10415 4.28927 4.37586 4.60909 4.62999 4.74937 4.88562 4.98315 5.07988 5.09014 5.17340 5.32827 5.33538 5.38980 5.42115 5.43964 5.53311 5.54478 5.58015 5.62718 5.67880 5.68359 5.77996 5.84797 5.96615 6.03144 6.07648 6.19315 6.24330 6.26326 6.37873 6.42260 6.52777 6.67502 6.87008 6.96321 7.08150 7.74259 7.80038 7.91199 8.45371 8.46728 8.55024 9.58048 10.15920 10.51537 11.50196 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.008855 B = 0.003255 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3161.212408 B = 8598.960478 C =10639.167810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.203 3.797 3 C 0.145 3.855 4 N -0.726 5.726 5 C -0.233 4.233 6 H 0.067 0.933 7 C -0.015 4.015 8 N -0.936 5.936 9 Si 0.905 3.095 10 H -0.287 1.287 11 H -0.292 1.292 12 H -0.287 1.287 13 N -0.703 5.703 14 C 0.518 3.482 15 O -0.536 6.536 16 C 0.119 3.881 17 N -0.728 5.728 18 C 0.725 3.275 19 O -0.592 6.592 20 N -0.638 5.638 21 C 0.096 3.904 22 C -0.129 4.129 23 C -0.135 4.135 24 C 0.125 3.875 25 C -0.151 4.151 26 C -0.173 4.173 27 C -0.182 4.182 28 H 0.079 0.921 29 H 0.066 0.934 30 H 0.052 0.948 31 H 0.023 0.977 32 H 0.044 0.956 33 H 0.382 0.618 34 H 0.254 0.746 35 H 0.402 0.598 36 H 0.099 0.901 37 H 0.094 0.906 38 H 0.408 0.592 39 H 0.069 0.931 40 H 0.067 0.933 41 H 0.076 0.924 42 H 0.083 0.917 43 H 0.084 0.916 44 H 0.077 0.923 45 H 0.064 0.936 46 H 0.079 0.921 47 H 0.123 0.877 48 H 0.099 0.901 49 H 0.093 0.907 50 H 0.093 0.907 51 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.352 -7.005 11.132 20.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.117 3.883 3 C 0.017 3.983 4 N -0.370 5.370 5 C -0.364 4.364 6 H 0.085 0.915 7 C -0.210 4.210 8 N -0.585 5.585 9 Si 0.737 3.263 10 H -0.214 1.214 11 H -0.218 1.218 12 H -0.214 1.214 13 N -0.353 5.353 14 C 0.303 3.697 15 O -0.413 6.413 16 C -0.009 4.009 17 N -0.386 5.386 18 C 0.427 3.573 19 O -0.470 6.470 20 N -0.377 5.377 21 C -0.027 4.027 22 C -0.167 4.167 23 C -0.173 4.173 24 C 0.002 3.998 25 C -0.169 4.169 26 C -0.210 4.210 27 C -0.219 4.219 28 H 0.098 0.902 29 H 0.085 0.915 30 H 0.071 0.929 31 H 0.041 0.959 32 H 0.062 0.938 33 H 0.216 0.784 34 H 0.064 0.936 35 H 0.236 0.764 36 H 0.117 0.883 37 H 0.112 0.888 38 H 0.245 0.755 39 H 0.088 0.912 40 H 0.086 0.914 41 H 0.095 0.905 42 H 0.101 0.899 43 H 0.103 0.897 44 H 0.096 0.904 45 H 0.083 0.917 46 H 0.097 0.903 47 H 0.141 0.859 48 H 0.117 0.883 49 H 0.111 0.889 50 H 0.111 0.889 51 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -15.288 -6.900 11.178 20.157 hybrid contribution 0.937 0.713 -0.234 1.200 sum -14.351 -6.187 10.945 19.080 Atomic orbital electron populations 1.22281 0.94640 1.01650 1.03638 1.20055 0.93079 0.93160 0.81957 1.21056 0.86497 0.91594 0.99159 1.42225 0.99153 1.06171 1.89476 1.19177 0.89004 0.86188 1.42025 0.91452 1.24674 0.96302 0.96678 1.03360 1.69632 1.06744 1.23837 1.58279 0.86291 0.78961 0.83306 0.77792 1.21426 1.21761 1.21368 1.45797 1.49027 1.35511 1.04963 1.20221 0.80043 0.84824 0.84567 1.90614 1.39303 1.25442 1.85986 1.20903 1.00907 0.96451 0.82681 1.44702 1.57675 1.32496 1.03758 1.15279 0.79828 0.82630 0.79549 1.90926 1.44248 1.26399 1.85466 1.47507 1.55566 1.28983 1.05660 1.22045 0.95062 0.87472 0.98169 1.22602 0.99172 1.01468 0.93480 1.22820 0.99346 0.96466 0.98686 1.22063 1.02313 0.96263 0.79180 1.22568 1.00811 0.97043 0.96495 1.23059 0.99229 1.02805 0.95895 1.22955 1.03978 0.91512 1.03464 0.90204 0.91511 0.92930 0.95925 0.93810 0.78422 0.93618 0.76410 0.88303 0.88837 0.75467 0.91244 0.91448 0.90494 0.89854 0.89705 0.90418 0.91733 0.90295 0.85928 0.88292 0.88882 0.88887 0.89002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.27 6.98 37.16 0.26 -2.01 16 2 C 0.20 3.21 0.54 -131.82 -0.07 3.14 16 3 C 0.15 3.02 5.03 -4.04 -0.02 3.00 16 4 N -0.73 -18.11 5.04 -59.91 -0.30 -18.41 16 5 C -0.23 -6.59 9.99 -15.06 -0.15 -6.74 16 6 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 7 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 8 N -0.94 -28.11 13.06 55.49 0.72 -27.39 16 9 Si 0.91 22.83 29.55 -169.99 -5.02 17.80 16 10 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 11 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 12 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 13 N -0.70 -10.48 4.73 -47.60 -0.22 -10.71 16 14 C 0.52 8.14 7.31 -10.99 -0.08 8.06 16 15 O -0.54 -9.66 11.90 5.55 0.07 -9.59 16 16 C 0.12 1.67 6.16 -5.20 -0.03 1.64 16 17 N -0.73 -10.38 5.49 -66.42 -0.36 -10.74 16 18 C 0.73 11.02 8.49 -86.91 -0.74 10.28 16 19 O -0.59 -10.90 16.59 5.29 0.09 -10.81 16 20 N -0.64 -7.60 3.33 -176.22 -0.59 -8.19 16 21 C 0.10 0.86 6.15 -3.06 -0.02 0.84 16 22 C -0.13 -0.82 6.95 -24.89 -0.17 -0.99 16 23 C -0.14 -0.90 7.09 -24.57 -0.17 -1.07 16 24 C 0.12 1.20 6.91 -2.52 -0.02 1.18 16 25 C -0.15 -2.22 4.84 -90.62 -0.44 -2.65 16 26 C -0.17 -2.10 9.64 -26.69 -0.26 -2.36 16 27 C -0.18 -2.11 9.82 -26.69 -0.26 -2.37 16 28 H 0.08 1.24 6.04 -51.93 -0.31 0.92 16 29 H 0.07 0.86 6.78 -51.93 -0.35 0.51 16 30 H 0.05 0.64 6.98 -51.93 -0.36 0.28 16 31 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.04 1.01 6.32 -51.93 -0.33 0.68 16 33 H 0.38 9.77 6.62 -40.82 -0.27 9.50 16 34 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 35 H 0.40 5.33 8.48 -40.82 -0.35 4.98 16 36 H 0.10 1.48 8.14 -51.93 -0.42 1.06 16 37 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.41 5.62 6.42 -40.82 -0.26 5.36 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.08 0.85 8.03 -51.93 -0.42 0.43 16 47 H 0.12 2.19 7.09 -51.93 -0.37 1.83 16 48 H 0.10 1.11 5.88 -51.93 -0.31 0.81 16 49 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 50 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 51 H 0.09 0.98 7.35 -51.93 -0.38 0.60 16 LS Contribution 402.22 15.07 6.06 6.06 Total: -1.00 -34.67 402.22 -10.16 -44.82 By element: Atomic # 1 Polarization: 26.06 SS G_CDS: -8.33 Total: 17.73 kcal Atomic # 6 Polarization: 11.70 SS G_CDS: -2.27 Total: 9.43 kcal Atomic # 7 Polarization: -74.69 SS G_CDS: -0.75 Total: -75.44 kcal Atomic # 8 Polarization: -20.56 SS G_CDS: 0.15 Total: -20.41 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -5.02 Total: 17.80 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.67 -10.16 -44.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665996127.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.776 kcal (2) G-P(sol) polarization free energy of solvation -34.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds