Wall clock time and date at job start Tue Mar 31 2020 20:39:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53009 * 109.46958 * 2 1 4 4 N 1.46493 * 109.46824 * 179.97438 * 3 2 1 5 5 C 1.36945 * 119.99909 * 179.97438 * 4 3 2 6 6 H 1.07998 * 119.99522 * 0.02562 * 5 4 3 7 7 C 1.38805 * 120.00196 * 180.02562 * 5 4 3 8 8 N 1.31622 * 120.00056 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00223 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47066 * 59.99494 * 9 7 5 11 11 H 1.48498 * 109.47281 * 179.97438 * 9 7 5 12 12 H 1.48506 * 109.46713 * 299.99694 * 9 7 5 13 13 N 1.46498 * 109.47039 * 119.99818 * 2 1 3 14 14 C 1.34777 * 120.00023 * 304.29638 * 13 2 1 15 15 O 1.21287 * 120.00179 * 354.99137 * 14 13 2 16 16 C 1.50696 * 119.99995 * 174.98718 * 14 13 2 17 17 N 1.46495 * 109.47238 * 179.97438 * 16 14 13 18 18 C 1.34781 * 119.99955 * 180.02562 * 17 16 14 19 19 O 1.21585 * 120.00059 * 0.02562 * 18 17 16 20 20 N 1.34781 * 120.00025 * 179.97438 * 18 17 16 21 21 C 1.47027 * 125.64566 * 359.69755 * 20 18 17 22 22 C 1.54324 * 107.27036 * 181.32294 * 21 20 18 23 23 C 1.55160 * 102.94198 * 22.18943 * 22 21 20 24 24 C 1.47418 * 125.64975 * 179.97438 * 20 18 17 25 25 C 1.52994 * 109.47157 * 240.00361 * 2 1 3 26 26 C 1.53000 * 117.50124 * 12.73584 * 25 2 1 27 27 C 1.53002 * 117.49747 * 304.07485 * 25 2 1 28 28 H 1.08996 * 109.47068 * 300.00079 * 1 2 3 29 29 H 1.09006 * 109.46645 * 59.99858 * 1 2 3 30 30 H 1.08991 * 109.46928 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46877 * 300.00072 * 3 2 1 32 32 H 1.09004 * 109.47103 * 59.99779 * 3 2 1 33 33 H 0.97001 * 120.00731 * 0.02562 * 4 3 2 34 34 H 0.97005 * 120.00135 * 180.02562 * 8 7 5 35 35 H 0.96994 * 119.99784 * 124.30089 * 13 2 1 36 36 H 1.09004 * 109.46911 * 60.00624 * 16 14 13 37 37 H 1.08997 * 109.47786 * 300.00356 * 16 14 13 38 38 H 0.97002 * 120.00424 * 0.02562 * 17 16 14 39 39 H 1.09000 * 109.88002 * 300.73690 * 21 20 18 40 40 H 1.09000 * 109.88419 * 61.90375 * 21 20 18 41 41 H 1.09006 * 110.71778 * 263.82770 * 22 21 20 42 42 H 1.08995 * 110.72192 * 140.55595 * 22 21 20 43 43 H 1.09001 * 111.00442 * 206.43119 * 23 22 21 44 44 H 1.09000 * 111.00513 * 82.57492 * 23 22 21 45 45 H 1.08996 * 110.37252 * 274.44667 * 24 20 18 46 46 H 1.09001 * 110.36817 * 36.66627 * 24 20 18 47 47 H 1.09000 * 115.54836 * 158.41028 * 25 2 1 48 48 H 1.09000 * 117.49477 * 0.02562 * 26 25 2 49 49 H 1.08999 * 117.49719 * 145.02937 * 26 25 2 50 50 H 1.09001 * 117.50023 * 214.98401 * 27 25 2 51 51 H 1.09001 * 117.49851 * 0.02562 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1897 2.6285 0.0002 6 1 3.6496 3.5638 -0.0002 7 6 5.5777 2.6286 0.0002 8 7 6.2359 1.4887 0.0002 9 14 6.5118 4.2463 0.0004 10 1 6.1529 5.0249 1.2129 11 1 7.9718 3.9750 0.0011 12 1 6.1531 5.0250 -1.2122 13 7 2.0184 -0.6906 1.1962 14 6 1.6229 -0.2827 2.4184 15 8 0.9364 0.7105 2.5336 16 6 2.0336 -1.0609 3.6418 17 7 1.4819 -0.4183 4.8372 18 6 1.7214 -0.9428 6.0555 19 8 2.3957 -1.9488 6.1624 20 7 1.2143 -0.3513 7.1553 21 6 0.3924 0.8677 7.1709 22 6 0.0729 1.1860 8.6467 23 6 1.2034 0.4502 9.4135 24 6 1.3966 -0.8163 8.5423 25 6 2.0400 -0.7211 -1.2492 26 6 1.0275 -1.0156 -2.3578 27 6 1.5586 -2.1544 -1.4835 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 3.9901 0.6026 0.0006 34 1 7.2060 1.4887 0.0006 35 1 2.6263 -1.4412 1.1085 36 1 3.1213 -1.0823 3.7106 37 1 1.6540 -2.0800 3.5687 38 1 0.9443 0.3845 4.7520 39 1 0.9463 1.6938 6.7250 40 1 -0.5324 0.6983 6.6195 41 1 -0.9034 0.7886 8.9243 42 1 0.1192 2.2597 8.8284 43 1 0.8838 0.1857 10.4215 44 1 2.1132 1.0501 9.4386 45 1 0.6470 -1.5670 8.7925 46 1 2.3991 -1.2224 8.6776 47 1 3.0589 -0.4769 -1.5500 48 1 -0.0019 -0.6952 -2.1973 49 1 1.3804 -0.9657 -3.3879 50 1 2.2606 -2.8531 -1.9388 51 1 0.8782 -2.5834 -0.7479 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001665996127.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:45 Heat of formation + Delta-G solvation = -40.802629 kcal Electronic energy + Delta-G solvation = -30429.310382 eV Core-core repulsion = 26364.183018 eV Total energy + Delta-G solvation = -4065.127364 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.70223 -41.08683 -39.20126 -38.42251 -36.39239 -35.57950 -35.01708 -33.19502 -32.58262 -31.32657 -29.99100 -28.40470 -27.54654 -25.19756 -24.40429 -24.00670 -23.12100 -22.09810 -21.48029 -21.09201 -20.17892 -19.54170 -19.23572 -17.96554 -17.68926 -17.32700 -16.83409 -16.76836 -16.47027 -16.24560 -15.87497 -15.57973 -15.36997 -15.02442 -14.56088 -14.54651 -14.29560 -14.16118 -13.96073 -13.85898 -13.66152 -13.59305 -13.25679 -13.15808 -13.03662 -12.77640 -12.44774 -12.24458 -12.21892 -12.15163 -12.06116 -12.02125 -11.75328 -11.60293 -11.48532 -11.25266 -11.06913 -10.92415 -10.62720 -10.40309 -9.98431 -9.58100 -8.94463 -7.95452 -5.21448 1.37572 1.43665 1.46222 1.52321 1.57530 2.00362 2.16527 2.54722 2.94103 3.04703 3.37185 3.57739 3.66628 3.68157 3.74440 3.91879 3.96376 4.06216 4.17936 4.25268 4.28717 4.30506 4.35063 4.47353 4.47762 4.62273 4.64120 4.80402 4.84971 4.88985 4.90476 4.91689 4.98261 5.00160 5.04398 5.11005 5.13974 5.22129 5.23998 5.30437 5.34149 5.35924 5.45070 5.48553 5.64689 5.94612 6.26896 6.57162 6.82392 7.20874 7.34477 7.40149 8.10344 8.37337 9.27189 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.008855 B = 0.003255 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3161.212408 B = 8598.960478 C =10639.167810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.212 3.788 3 C 0.146 3.854 4 N -0.730 5.730 5 C -0.244 4.244 6 H 0.064 0.936 7 C -0.069 4.069 8 N -0.964 5.964 9 Si 0.967 3.033 10 H -0.284 1.284 11 H -0.293 1.293 12 H -0.278 1.278 13 N -0.698 5.698 14 C 0.517 3.483 15 O -0.560 6.560 16 C 0.125 3.875 17 N -0.726 5.726 18 C 0.717 3.283 19 O -0.631 6.631 20 N -0.639 5.639 21 C 0.088 3.912 22 C -0.120 4.120 23 C -0.125 4.125 24 C 0.115 3.885 25 C -0.176 4.176 26 C -0.163 4.163 27 C -0.156 4.156 28 H 0.062 0.938 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.018 0.982 32 H 0.021 0.979 33 H 0.377 0.623 34 H 0.250 0.750 35 H 0.410 0.590 36 H 0.088 0.912 37 H 0.115 0.885 38 H 0.410 0.590 39 H 0.061 0.939 40 H 0.074 0.926 41 H 0.093 0.907 42 H 0.098 0.902 43 H 0.111 0.889 44 H 0.072 0.928 45 H 0.075 0.925 46 H 0.060 0.940 47 H 0.085 0.915 48 H 0.114 0.886 49 H 0.097 0.903 50 H 0.102 0.898 51 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.151 -7.202 11.606 21.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.127 3.873 3 C 0.019 3.981 4 N -0.373 5.373 5 C -0.376 4.376 6 H 0.082 0.918 7 C -0.262 4.262 8 N -0.614 5.614 9 Si 0.796 3.204 10 H -0.211 1.211 11 H -0.219 1.219 12 H -0.204 1.204 13 N -0.348 5.348 14 C 0.303 3.697 15 O -0.440 6.440 16 C -0.003 4.003 17 N -0.384 5.384 18 C 0.419 3.581 19 O -0.513 6.513 20 N -0.377 5.377 21 C -0.035 4.035 22 C -0.158 4.158 23 C -0.163 4.163 24 C -0.007 4.007 25 C -0.195 4.195 26 C -0.200 4.200 27 C -0.192 4.192 28 H 0.081 0.919 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.036 0.964 32 H 0.039 0.961 33 H 0.210 0.790 34 H 0.059 0.941 35 H 0.246 0.754 36 H 0.106 0.894 37 H 0.133 0.867 38 H 0.248 0.752 39 H 0.080 0.920 40 H 0.092 0.908 41 H 0.112 0.888 42 H 0.117 0.883 43 H 0.130 0.870 44 H 0.090 0.910 45 H 0.093 0.907 46 H 0.079 0.921 47 H 0.104 0.896 48 H 0.132 0.868 49 H 0.116 0.884 50 H 0.120 0.880 51 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -17.132 -7.075 11.660 21.899 hybrid contribution 1.461 0.804 -0.386 1.711 sum -15.672 -6.271 11.275 20.299 Atomic orbital electron populations 1.22200 0.92527 1.03154 1.03348 1.19872 0.94383 0.90223 0.82861 1.21111 0.84170 0.95259 0.97589 1.42304 1.00831 1.05007 1.89137 1.19513 0.89634 0.87251 1.41223 0.91754 1.25417 0.97126 0.99803 1.03836 1.69776 1.06553 1.25602 1.59499 0.85309 0.77354 0.79716 0.77976 1.21063 1.21862 1.20399 1.45797 1.48912 1.35474 1.04645 1.20479 0.79580 0.84517 0.85104 1.90605 1.40491 1.26484 1.86375 1.20866 1.00244 0.97241 0.81990 1.44681 1.57544 1.32493 1.03708 1.15500 0.79834 0.82489 0.80302 1.90884 1.46109 1.28196 1.86127 1.47681 1.54941 1.29451 1.05629 1.22277 0.94672 0.85953 1.00553 1.22626 0.99697 1.02456 0.90980 1.22811 0.99418 0.94691 0.99388 1.22302 1.01662 0.98164 0.78598 1.22257 0.99790 1.00246 0.97237 1.23190 0.99071 1.02283 0.95447 1.23037 1.03376 0.89947 1.02883 0.91887 0.90425 0.90421 0.96396 0.96064 0.79010 0.94075 0.75437 0.89427 0.86718 0.75227 0.92039 0.90761 0.88820 0.88323 0.87030 0.90973 0.90685 0.92127 0.89631 0.86815 0.88433 0.87952 0.87300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.01 6.98 71.98 0.50 -3.51 16 2 C 0.21 6.64 0.54 3.61 0.00 6.65 16 3 C 0.15 6.22 5.03 86.38 0.43 6.65 16 4 N -0.73 -37.44 5.04 -343.45 -1.73 -39.17 16 5 C -0.24 -14.11 9.99 84.03 0.84 -13.27 16 6 H 0.06 3.68 7.83 -2.91 -0.02 3.65 16 7 C -0.07 -4.05 5.50 84.86 0.47 -3.58 16 8 N -0.96 -58.95 13.06 21.65 0.28 -58.67 16 9 Si 0.97 47.40 29.55 68.60 2.03 49.43 16 10 H -0.28 -13.66 7.11 99.48 0.71 -12.96 16 11 H -0.29 -14.29 7.11 99.48 0.71 -13.58 16 12 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 13 N -0.70 -20.71 4.73 -422.91 -2.00 -22.71 16 14 C 0.52 16.34 7.31 87.66 0.64 16.98 16 15 O -0.56 -20.47 11.90 -3.05 -0.04 -20.51 16 16 C 0.12 3.54 6.16 85.63 0.53 4.07 16 17 N -0.73 -21.02 5.49 -482.31 -2.65 -23.67 16 18 C 0.72 22.17 8.49 179.05 1.52 23.69 16 19 O -0.63 -23.87 16.59 -3.98 -0.07 -23.94 16 20 N -0.64 -15.12 3.33 -829.71 -2.76 -17.88 16 21 C 0.09 1.49 6.15 86.73 0.53 2.03 16 22 C -0.12 -1.22 6.95 31.78 0.22 -1.00 16 23 C -0.13 -1.41 7.09 32.00 0.23 -1.19 16 24 C 0.12 2.14 6.91 86.86 0.60 2.74 16 25 C -0.18 -5.06 4.84 -10.80 -0.05 -5.11 16 26 C -0.16 -3.58 9.64 30.62 0.30 -3.29 16 27 C -0.16 -3.19 9.82 30.62 0.30 -2.89 16 28 H 0.06 1.89 6.04 -2.39 -0.01 1.88 16 29 H 0.08 1.84 6.78 -2.38 -0.02 1.82 16 30 H 0.08 1.64 6.98 -2.39 -0.02 1.63 16 31 H 0.02 0.78 8.14 -2.39 -0.02 0.77 16 32 H 0.02 1.01 6.32 -2.38 -0.02 1.00 16 33 H 0.38 19.93 6.62 -92.71 -0.61 19.32 16 34 H 0.25 14.94 8.31 -92.70 -0.77 14.17 16 35 H 0.41 10.76 8.48 -92.71 -0.79 9.97 16 36 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 37 H 0.12 2.76 8.14 -2.39 -0.02 2.74 16 38 H 0.41 11.48 6.42 -92.71 -0.60 10.88 16 39 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.09 0.69 8.14 -2.38 -0.02 0.67 16 42 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 44 H 0.07 0.91 8.14 -2.39 -0.02 0.90 16 45 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 46 H 0.06 1.34 8.03 -2.39 -0.02 1.32 16 47 H 0.09 3.14 7.09 -2.39 -0.02 3.13 16 48 H 0.11 2.18 5.88 -2.39 -0.01 2.17 16 49 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 50 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 51 H 0.11 1.91 7.35 -2.39 -0.02 1.89 16 Total: -1.00 -76.70 402.22 -0.90 -77.60 By element: Atomic # 1 Polarization: 51.57 SS G_CDS: -1.03 Total: 50.54 kcal Atomic # 6 Polarization: 21.91 SS G_CDS: 7.06 Total: 28.97 kcal Atomic # 7 Polarization: -153.24 SS G_CDS: -8.85 Total: -162.09 kcal Atomic # 8 Polarization: -44.34 SS G_CDS: -0.10 Total: -44.44 kcal Atomic # 14 Polarization: 47.40 SS G_CDS: 2.03 Total: 49.43 kcal Total: -76.70 -0.90 -77.60 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665996127.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.797 kcal (2) G-P(sol) polarization free energy of solvation -76.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds