Wall clock time and date at job start Tue Mar 31 2020 21:41:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.58797 * 2 1 4 4 C 1.53164 * 109.70390 * 239.63806 * 2 1 3 5 5 C 1.53045 * 109.32804 * 185.50406 * 4 2 1 6 6 H 1.08992 * 109.45827 * 181.38682 * 5 4 2 7 7 N 1.46508 * 109.45692 * 301.35790 * 5 4 2 8 8 C 1.36932 * 119.99870 * 205.02650 * 7 5 4 9 9 H 1.08001 * 120.00087 * 0.02562 * 8 7 5 10 10 C 1.38812 * 120.00134 * 179.97438 * 8 7 5 11 11 N 1.31619 * 120.00187 * 179.97438 * 10 8 7 12 12 Si 1.86806 * 119.99661 * 0.02562 * 10 8 7 13 13 H 1.48496 * 109.46999 * 89.99672 * 12 10 8 14 14 H 1.48498 * 109.47034 * 329.99480 * 12 10 8 15 15 H 1.48504 * 109.46673 * 209.99705 * 12 10 8 16 16 C 1.53035 * 109.52845 * 61.36787 * 5 4 2 17 17 C 1.53190 * 109.31591 * 298.65021 * 16 5 4 18 18 N 1.46920 * 109.58582 * 120.28586 * 2 1 3 19 19 C 1.34773 * 120.63471 * 353.51548 * 18 2 1 20 20 O 1.21288 * 119.99741 * 354.24660 * 19 18 2 21 21 C 1.50697 * 120.00528 * 174.24791 * 19 18 2 22 22 N 1.46501 * 109.47546 * 179.97438 * 21 19 18 23 23 C 1.34775 * 120.00324 * 180.02562 * 22 21 19 24 24 O 1.21587 * 120.00059 * 359.97438 * 23 22 21 25 25 N 1.34779 * 120.00127 * 180.02562 * 23 22 21 26 26 C 1.47022 * 125.64786 * 359.68347 * 25 23 22 27 27 C 1.54314 * 107.27451 * 180.97072 * 26 25 23 28 28 C 1.55147 * 102.86287 * 22.52989 * 27 26 25 29 29 C 1.47423 * 125.64695 * 179.97438 * 25 23 22 30 30 H 1.09007 * 109.46487 * 305.47016 * 1 2 3 31 31 H 1.09004 * 109.47176 * 65.46508 * 1 2 3 32 32 H 1.08993 * 109.47548 * 185.46813 * 1 2 3 33 33 H 1.09003 * 109.48160 * 65.55541 * 4 2 1 34 34 H 1.08998 * 109.50410 * 305.46613 * 4 2 1 35 35 H 0.96995 * 119.99779 * 25.02993 * 7 5 4 36 36 H 0.96999 * 119.99803 * 179.97438 * 11 10 8 37 37 H 1.09006 * 109.49428 * 58.59676 * 16 5 4 38 38 H 1.08992 * 109.49946 * 178.65573 * 16 5 4 39 39 H 1.09000 * 109.59030 * 174.42604 * 17 16 5 40 40 H 1.09008 * 109.58238 * 294.70306 * 17 16 5 41 41 H 1.09003 * 109.47367 * 300.00188 * 21 19 18 42 42 H 1.08999 * 109.47208 * 59.99859 * 21 19 18 43 43 H 0.97008 * 119.99622 * 359.97438 * 22 21 19 44 44 H 1.08998 * 109.88215 * 300.52144 * 26 25 23 45 45 H 1.09003 * 109.88341 * 61.68134 * 26 25 23 46 46 H 1.08996 * 110.92416 * 264.11084 * 27 26 25 47 47 H 1.09005 * 110.73858 * 140.86171 * 27 26 25 48 48 H 1.09004 * 111.00481 * 206.23102 * 28 27 26 49 49 H 1.09001 * 111.04315 * 82.38961 * 28 27 26 50 50 H 1.08996 * 110.36767 * 274.67084 * 29 25 23 51 51 H 1.08998 * 110.36736 * 36.88805 * 29 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0464 -0.7289 -1.2442 5 6 3.5706 -0.8444 -1.1675 6 1 3.9426 -1.3410 -2.0635 7 7 4.1573 0.4946 -1.0721 8 6 5.4414 0.7111 -1.4955 9 1 6.0215 -0.1051 -1.9001 10 6 5.9973 1.9799 -1.4057 11 7 7.2317 2.1880 -1.8121 12 14 4.9936 3.3919 -0.7065 13 1 5.2016 3.4675 0.7619 14 1 3.5541 3.1646 -0.9916 15 1 5.4275 4.6659 -1.3342 16 6 3.9602 -1.6608 0.0669 17 6 3.4653 -0.9426 1.3263 18 7 2.0225 -0.6981 1.1953 19 6 1.1672 -1.1061 2.1536 20 8 -0.0064 -0.8075 2.0860 21 6 1.6689 -1.9331 3.3091 22 7 0.5538 -2.2458 4.2064 23 6 0.7673 -2.9805 5.3159 24 8 1.8852 -3.3843 5.5719 25 7 -0.2587 -3.2686 6.1412 26 6 -1.6533 -2.8415 5.9559 27 6 -2.4611 -3.3820 7.1544 28 6 -1.3714 -3.5930 8.2385 29 6 -0.1672 -4.0590 7.3822 30 1 -0.3632 0.5964 0.8370 31 1 -0.3634 0.4267 -0.9349 32 1 -0.3634 -1.0229 0.0979 33 1 1.7686 -0.1671 -2.1361 34 1 1.6079 -1.7257 -1.2903 35 1 3.6362 1.2277 -0.7090 36 1 7.6199 3.0747 -1.7497 37 1 3.5036 -2.6489 0.0085 38 1 5.0445 -1.7631 0.1081 39 1 3.6524 -1.5667 2.2002 40 1 3.9904 0.0063 1.4359 41 1 2.1027 -2.8592 2.9318 42 1 2.4277 -1.3724 3.8548 43 1 -0.3380 -1.9233 4.0023 44 1 -1.7074 -1.7532 5.9304 45 1 -2.0478 -3.2561 5.0282 46 1 -2.9441 -4.3265 6.9041 47 1 -3.1976 -2.6497 7.4852 48 1 -1.6694 -4.3662 8.9467 49 1 -1.1465 -2.6594 8.7542 50 1 -0.2479 -5.1232 7.1610 51 1 0.7703 -3.8493 7.8973 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671230099.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:41:00 Heat of formation + Delta-G solvation = -49.836558 kcal Electronic energy + Delta-G solvation = -30568.414651 eV Core-core repulsion = 26502.895547 eV Total energy + Delta-G solvation = -4065.519104 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.91142 -41.14175 -39.13518 -38.44983 -36.06851 -35.70425 -34.08792 -33.70562 -32.53381 -31.47999 -30.02540 -28.94271 -28.01457 -25.72014 -25.00303 -24.48814 -23.10559 -22.07155 -21.45040 -21.10299 -19.94044 -19.78817 -19.10891 -17.77602 -17.65109 -17.32544 -16.94659 -16.74929 -16.50286 -16.07368 -15.73096 -15.50098 -15.24696 -14.96200 -14.89347 -14.51307 -14.41653 -14.20170 -14.15564 -14.03248 -13.84205 -13.59492 -13.29060 -13.18040 -13.06656 -12.98207 -12.67683 -12.56050 -12.21042 -12.14618 -12.08453 -11.99519 -11.97076 -11.72217 -11.59817 -11.48838 -11.45488 -10.94996 -10.41373 -10.23433 -9.65416 -9.57381 -9.26517 -7.99543 -5.31323 1.33399 1.36187 1.37841 1.42212 1.45156 1.96957 2.00408 2.48337 2.93097 3.29077 3.32812 3.60039 3.67698 3.71105 3.85245 3.92926 4.01703 4.06787 4.21737 4.25317 4.28972 4.30380 4.31194 4.44174 4.48279 4.58375 4.62736 4.70818 4.81492 4.85540 4.90742 4.92685 4.98994 5.02862 5.07132 5.11682 5.17060 5.22651 5.23554 5.27618 5.29365 5.36058 5.40233 5.66013 5.82985 5.94714 6.24401 6.33775 6.82508 6.99263 7.11168 7.40592 7.87766 8.05536 9.22163 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.019671 B = 0.002459 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.051808 B =11385.740325 C =11718.005906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.142 3.858 3 H 0.055 0.945 4 C -0.125 4.125 5 C 0.169 3.831 6 H 0.051 0.949 7 N -0.746 5.746 8 C -0.216 4.216 9 H 0.062 0.938 10 C -0.062 4.062 11 N -0.984 5.984 12 Si 0.942 3.058 13 H -0.282 1.282 14 H -0.254 1.254 15 H -0.300 1.300 16 C -0.142 4.142 17 C 0.112 3.888 18 N -0.594 5.594 19 C 0.516 3.484 20 O -0.552 6.552 21 C 0.121 3.879 22 N -0.725 5.725 23 C 0.717 3.283 24 O -0.632 6.632 25 N -0.639 5.639 26 C 0.089 3.911 27 C -0.122 4.122 28 C -0.125 4.125 29 C 0.114 3.886 30 H 0.064 0.936 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.362 0.638 36 H 0.255 0.745 37 H 0.082 0.918 38 H 0.063 0.937 39 H 0.103 0.897 40 H 0.060 0.940 41 H 0.105 0.895 42 H 0.097 0.903 43 H 0.411 0.589 44 H 0.069 0.931 45 H 0.072 0.928 46 H 0.089 0.911 47 H 0.100 0.900 48 H 0.107 0.893 49 H 0.075 0.925 50 H 0.070 0.930 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.866 -12.661 17.350 32.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.039 3.961 3 H 0.073 0.927 4 C -0.164 4.164 5 C 0.061 3.939 6 H 0.069 0.931 7 N -0.391 5.391 8 C -0.347 4.347 9 H 0.080 0.920 10 C -0.254 4.254 11 N -0.635 5.635 12 Si 0.771 3.229 13 H -0.208 1.208 14 H -0.179 1.179 15 H -0.227 1.227 16 C -0.182 4.182 17 C -0.010 4.010 18 N -0.327 5.327 19 C 0.304 3.696 20 O -0.432 6.432 21 C -0.007 4.007 22 N -0.384 5.384 23 C 0.419 3.581 24 O -0.513 6.513 25 N -0.377 5.377 26 C -0.033 4.033 27 C -0.159 4.159 28 C -0.163 4.163 29 C -0.008 4.008 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.097 0.903 34 H 0.107 0.893 35 H 0.196 0.804 36 H 0.064 0.936 37 H 0.100 0.900 38 H 0.082 0.918 39 H 0.121 0.879 40 H 0.078 0.922 41 H 0.123 0.877 42 H 0.115 0.885 43 H 0.250 0.750 44 H 0.088 0.912 45 H 0.090 0.910 46 H 0.107 0.893 47 H 0.119 0.881 48 H 0.126 0.874 49 H 0.094 0.906 50 H 0.088 0.912 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -23.426 -12.817 17.319 31.828 hybrid contribution 0.209 1.460 -0.151 1.482 sum -23.217 -11.358 17.168 31.028 Atomic orbital electron populations 1.22054 0.91731 1.03004 1.01223 1.21267 0.95934 0.94817 0.84074 0.92697 1.22179 0.94985 1.01998 0.97201 1.20427 0.91947 0.85157 0.96324 0.93081 1.42859 1.12572 1.07160 1.76465 1.19019 0.89345 0.94684 1.31674 0.92044 1.25364 0.97146 0.99913 1.02931 1.69863 1.15671 1.22259 1.55729 0.85605 0.79533 0.79640 0.78166 1.20820 1.17904 1.22730 1.22353 1.01281 0.99058 0.95526 1.21773 0.78553 1.01183 0.99532 1.48110 1.07801 1.56733 1.20007 1.20481 0.85892 0.79870 0.83324 1.90709 1.17626 1.57906 1.76992 1.20960 0.89597 1.00515 0.89596 1.44676 1.12906 1.57132 1.23683 1.15496 0.83538 0.79145 0.79942 1.90907 1.23418 1.60484 1.76528 1.47682 1.08079 1.56438 1.25467 1.22268 0.80085 1.00115 1.00823 1.22622 0.97245 1.03093 0.92967 1.22801 0.93236 1.03024 0.97221 1.22289 1.00185 0.95088 0.83239 0.91668 0.92460 0.91998 0.90346 0.89307 0.80376 0.93596 0.89980 0.91819 0.87865 0.92192 0.87717 0.88480 0.75023 0.91233 0.90957 0.89265 0.88104 0.87426 0.90600 0.91157 0.92038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.08 7.62 71.98 0.55 -2.53 16 2 C 0.14 3.92 3.19 44.97 0.14 4.06 16 3 H 0.06 1.73 6.64 -2.39 -0.02 1.72 16 4 C -0.12 -3.38 5.08 30.66 0.16 -3.23 16 5 C 0.17 5.68 3.10 45.02 0.14 5.82 16 6 H 0.05 1.83 8.08 -2.39 -0.02 1.81 16 7 N -0.75 -31.88 4.11 -322.81 -1.33 -33.21 16 8 C -0.22 -11.61 10.41 84.03 0.87 -10.73 16 9 H 0.06 3.62 8.06 -2.91 -0.02 3.60 16 10 C -0.06 -3.57 5.50 84.86 0.47 -3.10 16 11 N -0.98 -62.03 13.97 21.65 0.30 -61.73 16 12 Si 0.94 44.78 27.74 68.60 1.90 46.68 16 13 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 14 H -0.25 -10.92 6.52 99.48 0.65 -10.27 16 15 H -0.30 -14.69 7.11 99.48 0.71 -13.98 16 16 C -0.14 -4.09 5.78 30.67 0.18 -3.92 16 17 C 0.11 3.02 6.09 86.36 0.53 3.55 16 18 N -0.59 -15.55 2.97 -795.08 -2.36 -17.91 16 19 C 0.52 12.86 7.57 87.66 0.66 13.52 16 20 O -0.55 -15.08 11.23 -3.05 -0.03 -15.11 16 21 C 0.12 2.74 4.51 85.63 0.39 3.13 16 22 N -0.73 -16.32 5.49 -482.30 -2.65 -18.96 16 23 C 0.72 18.38 8.49 179.05 1.52 19.90 16 24 O -0.63 -21.11 16.60 -3.99 -0.07 -21.17 16 25 N -0.64 -11.99 3.33 -829.74 -2.76 -14.75 16 26 C 0.09 1.04 6.14 86.73 0.53 1.57 16 27 C -0.12 -0.72 6.95 31.78 0.22 -0.50 16 28 C -0.12 -0.92 7.08 31.99 0.23 -0.70 16 29 C 0.11 1.71 6.91 86.86 0.60 2.31 16 30 H 0.06 1.79 6.54 -2.38 -0.02 1.77 16 31 H 0.06 1.27 8.14 -2.38 -0.02 1.26 16 32 H 0.06 1.57 6.95 -2.39 -0.02 1.55 16 33 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.36 15.26 3.92 -92.71 -0.36 14.90 16 36 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 37 H 0.08 1.95 8.14 -2.38 -0.02 1.93 16 38 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 39 H 0.10 2.26 5.93 -2.39 -0.01 2.24 16 40 H 0.06 1.94 7.74 -2.38 -0.02 1.92 16 41 H 0.11 2.26 7.93 -2.39 -0.02 2.24 16 42 H 0.10 2.22 7.71 -2.39 -0.02 2.20 16 43 H 0.41 8.42 6.42 -92.70 -0.60 7.83 16 44 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 45 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 46 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 47 H 0.10 0.31 8.14 -2.38 -0.02 0.29 16 48 H 0.11 0.37 8.14 -2.38 -0.02 0.35 16 49 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 50 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 51 H 0.06 1.13 8.03 -2.39 -0.02 1.11 16 Total: -1.00 -72.80 390.56 0.11 -72.69 By element: Atomic # 1 Polarization: 34.41 SS G_CDS: -0.08 Total: 34.33 kcal Atomic # 6 Polarization: 21.97 SS G_CDS: 7.18 Total: 29.15 kcal Atomic # 7 Polarization: -137.77 SS G_CDS: -8.80 Total: -146.57 kcal Atomic # 8 Polarization: -36.18 SS G_CDS: -0.10 Total: -36.28 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 1.90 Total: 46.68 kcal Total: -72.80 0.11 -72.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671230099.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.852 kcal (2) G-P(sol) polarization free energy of solvation -72.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds