Wall clock time and date at job start Tue Mar 31 2020 21:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.49759 * 2 1 4 4 C 1.53191 * 109.49945 * 239.92958 * 2 1 3 5 5 N 1.46927 * 108.77447 * 185.41332 * 4 2 1 6 6 C 1.34777 * 120.63068 * 233.63085 * 5 4 2 7 7 O 1.21281 * 119.99955 * 359.97438 * 6 5 4 8 8 C 1.50700 * 119.99934 * 180.02562 * 6 5 4 9 9 N 1.46507 * 109.47018 * 179.97438 * 8 6 5 10 10 C 1.34776 * 120.00276 * 179.97438 * 9 8 6 11 11 O 1.21590 * 119.99413 * 359.97438 * 10 9 8 12 12 N 1.34775 * 120.00329 * 179.97438 * 10 9 8 13 13 C 1.47018 * 125.64640 * 359.69567 * 12 10 9 14 14 C 1.54313 * 107.27667 * 180.96646 * 13 12 10 15 15 C 1.55165 * 102.86088 * 22.52587 * 14 13 12 16 16 C 1.47416 * 125.64901 * 179.97438 * 12 10 9 17 17 C 1.46928 * 118.74229 * 53.60932 * 5 4 2 18 18 C 1.53189 * 108.77461 * 306.39163 * 17 5 4 19 19 C 1.53041 * 109.49790 * 120.05906 * 2 1 3 20 20 H 1.08997 * 109.45920 * 61.29882 * 19 2 1 21 21 N 1.46506 * 109.46025 * 301.33776 * 19 2 1 22 22 C 1.36938 * 119.99914 * 154.99605 * 21 19 2 23 23 H 1.07998 * 119.99693 * 0.02562 * 22 21 19 24 24 C 1.38809 * 119.99672 * 179.97438 * 22 21 19 25 25 N 1.31618 * 120.00134 * 0.02562 * 24 22 21 26 26 Si 1.86804 * 119.99690 * 180.02562 * 24 22 21 27 27 H 1.48502 * 109.47215 * 60.00032 * 26 24 22 28 28 H 1.48500 * 109.47234 * 180.02562 * 26 24 22 29 29 H 1.48500 * 109.47205 * 300.00304 * 26 24 22 30 30 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46832 * 60.00551 * 1 2 3 32 32 H 1.09004 * 109.47261 * 300.00532 * 1 2 3 33 33 H 1.08998 * 109.58530 * 305.19958 * 4 2 1 34 34 H 1.08994 * 109.58660 * 65.48618 * 4 2 1 35 35 H 1.09000 * 109.47005 * 299.99639 * 8 6 5 36 36 H 1.08996 * 109.47443 * 60.00113 * 8 6 5 37 37 H 0.96997 * 119.99896 * 359.97438 * 9 8 6 38 38 H 1.09008 * 109.88187 * 300.50749 * 13 12 10 39 39 H 1.09004 * 109.88687 * 61.67231 * 13 12 10 40 40 H 1.08995 * 110.92365 * 264.10956 * 14 13 12 41 41 H 1.09004 * 110.74491 * 140.84942 * 14 13 12 42 42 H 1.09004 * 111.00065 * 206.23122 * 15 14 13 43 43 H 1.08996 * 111.03389 * 82.39212 * 15 14 13 44 44 H 1.09003 * 110.37180 * 274.67326 * 16 12 10 45 45 H 1.09007 * 110.36992 * 36.88914 * 16 12 10 46 46 H 1.09002 * 109.57977 * 66.17684 * 17 5 4 47 47 H 1.08993 * 109.59036 * 186.45739 * 17 5 4 48 48 H 1.09000 * 109.49772 * 174.57938 * 18 17 5 49 49 H 1.09002 * 109.49978 * 294.65387 * 18 17 5 50 50 H 0.96992 * 119.99884 * 334.99833 * 21 19 2 51 51 H 0.97003 * 119.99443 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7236 -1.2497 5 7 3.5046 -0.8289 -1.1696 6 6 4.2812 -0.3851 -2.1779 7 8 3.7732 0.1063 -3.1634 8 6 5.7806 -0.5007 -2.0810 9 7 6.3920 0.0476 -3.2943 10 6 7.7329 0.0509 -3.4309 11 8 8.4350 -0.4008 -2.5470 12 7 8.2953 0.5548 -4.5473 13 6 7.5680 1.1239 -5.6912 14 6 8.6197 1.5477 -6.7379 15 6 9.8454 0.6699 -6.3710 16 6 9.7413 0.6213 -4.8260 17 6 4.1054 -1.4266 0.0306 18 6 3.5709 -0.6952 1.2659 19 6 2.0408 -0.7226 1.2486 20 1 1.6967 -1.7568 1.2359 21 7 1.5265 -0.0520 2.4454 22 6 1.3963 -0.7479 3.6176 23 1 1.6732 -1.7909 3.6599 24 6 0.9095 -0.1123 4.7515 25 7 0.5726 1.1589 4.7000 26 14 0.7326 -1.0614 6.3507 27 1 2.0608 -1.5763 6.7703 28 1 0.1948 -0.1623 7.4031 29 1 -0.1988 -2.2004 6.1500 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 0.5139 0.8900 33 1 1.6053 -1.7213 -1.2983 34 1 1.7617 -0.1588 -2.1390 35 1 6.1327 0.0563 -1.2128 36 1 6.0583 -1.5495 -1.9769 37 1 5.8318 0.4082 -3.9993 38 1 6.9004 0.3743 -6.1162 39 1 6.9953 1.9942 -5.3706 40 1 8.8605 2.6063 -6.6412 41 1 8.2727 1.3231 -7.7466 42 1 10.7746 1.1455 -6.6851 43 1 9.7549 -0.3277 -6.8006 44 1 10.1711 1.5222 -4.3881 45 1 10.2437 -0.2650 -4.4381 46 1 3.8376 -2.4818 0.0863 47 1 5.1898 -1.3268 -0.0151 48 1 3.9334 -1.1901 2.1669 49 1 3.9163 0.3385 1.2545 50 1 1.2781 0.8848 2.4074 51 1 0.2321 1.6029 5.4924 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698898370.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:53:30 Heat of formation + Delta-G solvation = -49.976020 kcal Electronic energy + Delta-G solvation = -29809.666064 eV Core-core repulsion = 25744.140912 eV Total energy + Delta-G solvation = -4065.525152 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.96 seconds Orbital eigenvalues (eV) -40.72737 -40.02603 -38.04790 -37.55338 -34.72876 -34.61512 -32.93770 -31.94944 -31.51335 -29.56050 -29.36095 -28.25194 -25.98048 -24.88054 -23.64867 -22.79995 -21.71807 -21.60516 -20.26990 -20.07678 -19.24516 -18.39468 -17.15133 -17.00959 -16.83304 -16.22239 -15.92910 -15.66297 -14.96150 -14.86528 -14.55578 -14.13836 -13.99962 -13.80118 -13.76308 -13.57583 -13.34944 -13.21303 -13.14530 -12.76114 -12.53926 -12.37147 -12.23893 -11.81024 -11.77945 -11.65977 -11.63368 -11.22591 -11.21818 -10.94872 -10.84025 -10.67675 -10.44998 -10.44153 -10.24875 -9.94743 -9.76058 -9.65571 -9.43078 -8.92743 -8.84185 -8.59463 -6.99464 -5.79700 -3.08665 2.20260 2.45748 2.96772 2.98812 3.41622 3.46539 3.47336 3.71479 4.12715 4.20837 4.31079 4.45472 4.55555 4.81864 4.93776 4.98635 5.13088 5.15860 5.19145 5.20684 5.24252 5.27995 5.32230 5.39530 5.42987 5.48830 5.51534 5.56325 5.64583 5.69584 5.72572 5.88467 5.90556 6.03012 6.07418 6.16194 6.27129 6.31881 6.39953 6.46212 6.57319 6.75723 6.77896 6.87907 7.01535 7.34595 7.66055 7.69508 7.99960 8.34549 8.38437 9.49887 10.06876 10.41631 11.42599 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.022305 B = 0.002051 C = 0.001948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.010723 B =13648.284431 C =14368.391883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.110 4.110 3 H 0.069 0.931 4 C 0.120 3.880 5 N -0.599 5.599 6 C 0.511 3.489 7 O -0.550 6.550 8 C 0.120 3.880 9 N -0.732 5.732 10 C 0.725 3.275 11 O -0.589 6.589 12 N -0.638 5.638 13 C 0.096 3.904 14 C -0.130 4.130 15 C -0.135 4.135 16 C 0.124 3.876 17 C 0.102 3.898 18 C -0.153 4.153 19 C 0.183 3.817 20 H 0.049 0.951 21 N -0.720 5.720 22 C -0.240 4.240 23 H 0.070 0.930 24 C -0.012 4.012 25 N -0.932 5.932 26 Si 0.906 3.094 27 H -0.286 1.286 28 H -0.292 1.292 29 H -0.286 1.286 30 H 0.051 0.949 31 H 0.043 0.957 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.089 0.911 35 H 0.100 0.900 36 H 0.098 0.902 37 H 0.407 0.593 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.078 0.922 41 H 0.083 0.917 42 H 0.085 0.915 43 H 0.076 0.924 44 H 0.066 0.934 45 H 0.079 0.921 46 H 0.072 0.928 47 H 0.080 0.920 48 H 0.078 0.922 49 H 0.060 0.940 50 H 0.384 0.616 51 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.123 -1.631 -23.631 27.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.130 4.130 3 H 0.088 0.912 4 C -0.002 4.002 5 N -0.331 5.331 6 C 0.298 3.702 7 O -0.429 6.429 8 C -0.008 4.008 9 N -0.390 5.390 10 C 0.427 3.573 11 O -0.467 6.467 12 N -0.377 5.377 13 C -0.027 4.027 14 C -0.168 4.168 15 C -0.173 4.173 16 C 0.001 3.999 17 C -0.021 4.021 18 C -0.194 4.194 19 C 0.073 3.927 20 H 0.067 0.933 21 N -0.360 5.360 22 C -0.371 4.371 23 H 0.087 0.913 24 C -0.209 4.209 25 N -0.580 5.580 26 Si 0.737 3.263 27 H -0.213 1.213 28 H -0.218 1.218 29 H -0.213 1.213 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.093 0.907 33 H 0.087 0.913 34 H 0.107 0.893 35 H 0.118 0.882 36 H 0.115 0.885 37 H 0.245 0.755 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.097 0.903 41 H 0.101 0.899 42 H 0.104 0.896 43 H 0.095 0.905 44 H 0.084 0.916 45 H 0.097 0.903 46 H 0.090 0.910 47 H 0.098 0.902 48 H 0.097 0.903 49 H 0.079 0.921 50 H 0.218 0.782 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 14.274 -1.860 -23.230 27.328 hybrid contribution -0.465 0.027 0.788 0.916 sum 13.808 -1.833 -22.441 26.413 Atomic orbital electron populations 1.21658 0.94026 1.01807 1.01886 1.21747 0.96654 1.00060 0.94544 0.91217 1.21749 0.77939 1.01028 0.99490 1.48100 1.07383 1.59650 1.17932 1.20401 0.88948 0.77903 0.82935 1.90652 1.75143 1.45677 1.31395 1.20953 0.89882 1.01339 0.88597 1.44762 1.05142 1.67039 1.22103 1.15275 0.81747 0.78817 0.81479 1.90945 1.61644 1.53205 1.40930 1.47515 1.07767 1.64899 1.17487 1.22037 0.95483 0.98329 0.86862 1.22603 0.95037 1.00472 0.98656 1.22818 0.98755 1.00880 0.94828 1.22089 0.80318 1.02451 0.95030 1.21986 0.97773 0.97700 0.84622 1.22703 1.00401 1.00498 0.95786 1.20201 0.90331 0.95749 0.86443 0.93340 1.42395 1.76465 1.11433 1.05734 1.19166 1.36106 0.94107 0.87693 0.91252 1.24736 1.02024 0.96023 0.98068 1.69649 1.49844 1.09472 1.29032 0.86292 0.77748 0.78696 0.83569 1.21291 1.21759 1.21317 0.93015 0.93825 0.90694 0.91349 0.89286 0.88241 0.88460 0.75547 0.91418 0.91363 0.90342 0.89863 0.89601 0.90500 0.91552 0.90257 0.90960 0.90176 0.90307 0.92073 0.78207 0.93458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 9.02 37.16 0.34 -1.80 16 2 C -0.11 -1.74 2.46 -90.50 -0.22 -1.96 16 3 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 4 C 0.12 1.65 5.71 -3.71 -0.02 1.63 16 5 N -0.60 -7.86 2.97 -172.77 -0.51 -8.38 16 6 C 0.51 6.82 7.77 -10.99 -0.09 6.73 16 7 O -0.55 -8.55 15.08 5.56 0.08 -8.47 16 8 C 0.12 1.41 4.50 -5.19 -0.02 1.39 16 9 N -0.73 -8.66 5.49 -66.41 -0.36 -9.03 16 10 C 0.73 9.42 8.49 -86.92 -0.74 8.68 16 11 O -0.59 -9.66 16.60 5.29 0.09 -9.57 16 12 N -0.64 -6.28 3.33 -176.23 -0.59 -6.87 16 13 C 0.10 0.66 6.14 -3.07 -0.02 0.64 16 14 C -0.13 -0.58 6.95 -24.90 -0.17 -0.75 16 15 C -0.13 -0.64 7.08 -24.57 -0.17 -0.81 16 16 C 0.12 0.97 6.91 -2.52 -0.02 0.96 16 17 C 0.10 1.26 6.34 -3.71 -0.02 1.23 16 18 C -0.15 -2.45 5.66 -26.61 -0.15 -2.60 16 19 C 0.18 3.34 2.19 -67.88 -0.15 3.19 16 20 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 21 N -0.72 -16.93 4.41 -53.38 -0.24 -17.17 16 22 C -0.24 -6.33 9.93 -15.06 -0.15 -6.48 16 23 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 24 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 25 N -0.93 -27.45 13.06 55.49 0.72 -26.73 16 26 Si 0.91 21.91 29.55 -169.99 -5.02 16.89 16 27 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 28 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 29 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 1.40 7.36 -51.93 -0.38 1.02 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.09 1.26 7.01 -51.93 -0.36 0.89 16 35 H 0.10 1.18 7.69 -51.93 -0.40 0.78 16 36 H 0.10 1.05 7.94 -51.93 -0.41 0.64 16 37 H 0.41 4.55 6.42 -40.82 -0.26 4.29 16 38 H 0.07 0.44 8.14 -51.92 -0.42 0.01 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 42 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 43 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 44 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.08 0.70 8.03 -51.93 -0.42 0.28 16 46 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 47 H 0.08 0.84 5.93 -51.93 -0.31 0.53 16 48 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 49 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 50 H 0.38 9.79 7.50 -40.82 -0.31 9.48 16 51 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 402.58 15.07 6.07 6.07 Total: -1.00 -32.96 402.58 -10.20 -43.17 By element: Atomic # 1 Polarization: 19.23 SS G_CDS: -8.74 Total: 10.49 kcal Atomic # 6 Polarization: 11.30 SS G_CDS: -1.71 Total: 9.60 kcal Atomic # 7 Polarization: -67.19 SS G_CDS: -0.98 Total: -68.16 kcal Atomic # 8 Polarization: -18.21 SS G_CDS: 0.17 Total: -18.04 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -32.96 -10.20 -43.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698898370.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.811 kcal (2) G-P(sol) polarization free energy of solvation -32.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.96 seconds