Wall clock time and date at job start Tue Mar 31 2020 21:53:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.49759 * 2 1 4 4 C 1.53191 * 109.49945 * 239.92958 * 2 1 3 5 5 N 1.46927 * 108.77447 * 185.41332 * 4 2 1 6 6 C 1.34777 * 120.63068 * 233.63085 * 5 4 2 7 7 O 1.21281 * 119.99955 * 359.97438 * 6 5 4 8 8 C 1.50700 * 119.99934 * 180.02562 * 6 5 4 9 9 N 1.46507 * 109.47018 * 179.97438 * 8 6 5 10 10 C 1.34776 * 120.00276 * 179.97438 * 9 8 6 11 11 O 1.21590 * 119.99413 * 359.97438 * 10 9 8 12 12 N 1.34775 * 120.00329 * 179.97438 * 10 9 8 13 13 C 1.47018 * 125.64640 * 359.69567 * 12 10 9 14 14 C 1.54313 * 107.27667 * 180.96646 * 13 12 10 15 15 C 1.55165 * 102.86088 * 22.52587 * 14 13 12 16 16 C 1.47416 * 125.64901 * 179.97438 * 12 10 9 17 17 C 1.46928 * 118.74229 * 53.60932 * 5 4 2 18 18 C 1.53189 * 108.77461 * 306.39163 * 17 5 4 19 19 C 1.53041 * 109.49790 * 120.05906 * 2 1 3 20 20 H 1.08997 * 109.45920 * 61.29882 * 19 2 1 21 21 N 1.46506 * 109.46025 * 301.33776 * 19 2 1 22 22 C 1.36938 * 119.99914 * 154.99605 * 21 19 2 23 23 H 1.07998 * 119.99693 * 0.02562 * 22 21 19 24 24 C 1.38809 * 119.99672 * 179.97438 * 22 21 19 25 25 N 1.31618 * 120.00134 * 0.02562 * 24 22 21 26 26 Si 1.86804 * 119.99690 * 180.02562 * 24 22 21 27 27 H 1.48502 * 109.47215 * 60.00032 * 26 24 22 28 28 H 1.48500 * 109.47234 * 180.02562 * 26 24 22 29 29 H 1.48500 * 109.47205 * 300.00304 * 26 24 22 30 30 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46832 * 60.00551 * 1 2 3 32 32 H 1.09004 * 109.47261 * 300.00532 * 1 2 3 33 33 H 1.08998 * 109.58530 * 305.19958 * 4 2 1 34 34 H 1.08994 * 109.58660 * 65.48618 * 4 2 1 35 35 H 1.09000 * 109.47005 * 299.99639 * 8 6 5 36 36 H 1.08996 * 109.47443 * 60.00113 * 8 6 5 37 37 H 0.96997 * 119.99896 * 359.97438 * 9 8 6 38 38 H 1.09008 * 109.88187 * 300.50749 * 13 12 10 39 39 H 1.09004 * 109.88687 * 61.67231 * 13 12 10 40 40 H 1.08995 * 110.92365 * 264.10956 * 14 13 12 41 41 H 1.09004 * 110.74491 * 140.84942 * 14 13 12 42 42 H 1.09004 * 111.00065 * 206.23122 * 15 14 13 43 43 H 1.08996 * 111.03389 * 82.39212 * 15 14 13 44 44 H 1.09003 * 110.37180 * 274.67326 * 16 12 10 45 45 H 1.09007 * 110.36992 * 36.88914 * 16 12 10 46 46 H 1.09002 * 109.57977 * 66.17684 * 17 5 4 47 47 H 1.08993 * 109.59036 * 186.45739 * 17 5 4 48 48 H 1.09000 * 109.49772 * 174.57938 * 18 17 5 49 49 H 1.09002 * 109.49978 * 294.65387 * 18 17 5 50 50 H 0.96992 * 119.99884 * 334.99833 * 21 19 2 51 51 H 0.97003 * 119.99443 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7236 -1.2497 5 7 3.5046 -0.8289 -1.1696 6 6 4.2812 -0.3851 -2.1779 7 8 3.7732 0.1063 -3.1634 8 6 5.7806 -0.5007 -2.0810 9 7 6.3920 0.0476 -3.2943 10 6 7.7329 0.0509 -3.4309 11 8 8.4350 -0.4008 -2.5470 12 7 8.2953 0.5548 -4.5473 13 6 7.5680 1.1239 -5.6912 14 6 8.6197 1.5477 -6.7379 15 6 9.8454 0.6699 -6.3710 16 6 9.7413 0.6213 -4.8260 17 6 4.1054 -1.4266 0.0306 18 6 3.5709 -0.6952 1.2659 19 6 2.0408 -0.7226 1.2486 20 1 1.6967 -1.7568 1.2359 21 7 1.5265 -0.0520 2.4454 22 6 1.3963 -0.7479 3.6176 23 1 1.6732 -1.7909 3.6599 24 6 0.9095 -0.1123 4.7515 25 7 0.5726 1.1589 4.7000 26 14 0.7326 -1.0614 6.3507 27 1 2.0608 -1.5763 6.7703 28 1 0.1948 -0.1623 7.4031 29 1 -0.1988 -2.2004 6.1500 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 0.5139 0.8900 33 1 1.6053 -1.7213 -1.2983 34 1 1.7617 -0.1588 -2.1390 35 1 6.1327 0.0563 -1.2128 36 1 6.0583 -1.5495 -1.9769 37 1 5.8318 0.4082 -3.9993 38 1 6.9004 0.3743 -6.1162 39 1 6.9953 1.9942 -5.3706 40 1 8.8605 2.6063 -6.6412 41 1 8.2727 1.3231 -7.7466 42 1 10.7746 1.1455 -6.6851 43 1 9.7549 -0.3277 -6.8006 44 1 10.1711 1.5222 -4.3881 45 1 10.2437 -0.2650 -4.4381 46 1 3.8376 -2.4818 0.0863 47 1 5.1898 -1.3268 -0.0151 48 1 3.9334 -1.1901 2.1669 49 1 3.9163 0.3385 1.2545 50 1 1.2781 0.8848 2.4074 51 1 0.2321 1.6029 5.4924 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698898370.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:53:26 Heat of formation + Delta-G solvation = -72.115477 kcal Electronic energy + Delta-G solvation = -29810.626103 eV Core-core repulsion = 25744.140912 eV Total energy + Delta-G solvation = -4066.485191 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 2.94 seconds Orbital eigenvalues (eV) -41.71882 -41.01614 -39.18432 -38.44478 -36.23663 -35.63402 -34.48642 -33.07441 -32.60944 -31.08205 -30.08264 -29.22183 -27.23223 -26.40943 -24.59475 -24.12845 -23.08154 -22.07389 -21.34325 -21.16004 -20.36887 -19.32495 -19.00387 -18.00830 -17.66653 -17.22475 -16.90284 -16.74292 -16.60391 -15.77927 -15.69525 -15.55816 -15.39757 -14.94261 -14.77420 -14.50358 -14.34754 -14.15156 -14.11335 -13.91181 -13.57693 -13.55614 -13.20891 -13.16857 -12.91660 -12.81565 -12.75186 -12.46818 -12.20716 -12.19722 -12.13671 -12.04726 -11.83007 -11.66647 -11.59242 -11.48289 -11.14449 -11.08266 -10.81567 -10.42108 -9.74770 -9.57983 -8.95638 -7.90356 -5.17707 1.32788 1.39986 1.49150 1.50993 1.56779 1.98034 2.00534 2.58607 2.92842 3.27199 3.43011 3.68124 3.71596 3.79820 3.82845 4.01087 4.07277 4.08534 4.25068 4.26385 4.30671 4.31965 4.40076 4.48817 4.50027 4.63046 4.67389 4.78668 4.80144 4.83829 4.86049 4.93039 4.97410 4.99515 5.02092 5.12008 5.14322 5.23320 5.24991 5.32171 5.36567 5.41596 5.50132 5.56554 5.63523 5.93999 6.26621 6.31330 6.81374 6.93177 7.37704 7.39871 8.14430 8.36930 9.32910 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.022305 B = 0.002051 C = 0.001948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.010723 B =13648.284431 C =14368.391883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.100 4.100 3 H 0.052 0.948 4 C 0.128 3.872 5 N -0.599 5.599 6 C 0.515 3.485 7 O -0.571 6.571 8 C 0.123 3.877 9 N -0.728 5.728 10 C 0.718 3.282 11 O -0.630 6.630 12 N -0.639 5.639 13 C 0.089 3.911 14 C -0.122 4.122 15 C -0.124 4.124 16 C 0.114 3.886 17 C 0.111 3.889 18 C -0.144 4.144 19 C 0.177 3.823 20 H 0.051 0.949 21 N -0.732 5.732 22 C -0.230 4.230 23 H 0.078 0.922 24 C -0.078 4.078 25 N -0.971 5.971 26 Si 0.968 3.032 27 H -0.279 1.279 28 H -0.301 1.301 29 H -0.279 1.279 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.039 0.961 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.100 0.900 36 H 0.111 0.889 37 H 0.411 0.589 38 H 0.072 0.928 39 H 0.068 0.932 40 H 0.086 0.914 41 H 0.102 0.898 42 H 0.107 0.893 43 H 0.078 0.922 44 H 0.068 0.932 45 H 0.064 0.936 46 H 0.094 0.906 47 H 0.104 0.896 48 H 0.067 0.933 49 H 0.045 0.955 50 H 0.370 0.630 51 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.175 -2.921 -25.847 30.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.120 4.120 3 H 0.071 0.929 4 C 0.005 3.995 5 N -0.330 5.330 6 C 0.304 3.696 7 O -0.452 6.452 8 C -0.004 4.004 9 N -0.387 5.387 10 C 0.419 3.581 11 O -0.512 6.512 12 N -0.377 5.377 13 C -0.034 4.034 14 C -0.160 4.160 15 C -0.162 4.162 16 C -0.008 4.008 17 C -0.012 4.012 18 C -0.185 4.185 19 C 0.069 3.931 20 H 0.069 0.931 21 N -0.371 5.371 22 C -0.362 4.362 23 H 0.096 0.904 24 C -0.270 4.270 25 N -0.622 5.622 26 Si 0.798 3.202 27 H -0.205 1.205 28 H -0.228 1.228 29 H -0.205 1.205 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.058 0.942 33 H 0.105 0.895 34 H 0.107 0.893 35 H 0.118 0.882 36 H 0.129 0.871 37 H 0.249 0.751 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.105 0.895 41 H 0.120 0.880 42 H 0.125 0.875 43 H 0.097 0.903 44 H 0.086 0.914 45 H 0.082 0.918 46 H 0.112 0.888 47 H 0.122 0.878 48 H 0.086 0.914 49 H 0.063 0.937 50 H 0.202 0.798 51 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 15.349 -3.180 -25.517 29.947 hybrid contribution -0.772 0.438 1.380 1.641 sum 14.577 -2.743 -24.137 28.330 Atomic orbital electron populations 1.21575 0.93925 1.02080 1.01203 1.21611 0.96700 0.99115 0.94600 0.92920 1.21644 0.78385 1.01636 0.97792 1.48113 1.07190 1.59588 1.18128 1.20583 0.89429 0.77125 0.82501 1.90645 1.75644 1.46559 1.32308 1.20956 0.88592 1.02203 0.88688 1.44712 1.04906 1.66886 1.22168 1.15483 0.81770 0.78896 0.81924 1.90904 1.62472 1.55168 1.42628 1.47680 1.08936 1.63820 1.17221 1.22273 0.96249 0.98350 0.86500 1.22626 0.93871 1.00823 0.98658 1.22799 0.99959 1.01394 0.92015 1.22294 0.79206 1.01808 0.97526 1.21984 0.98957 0.97992 0.82246 1.22491 0.98432 1.00092 0.97501 1.20461 0.91656 0.95492 0.85514 0.93121 1.42588 1.76859 1.10881 1.06733 1.19565 1.33682 0.94455 0.88486 0.90375 1.25494 1.03296 0.96929 1.01309 1.69813 1.52027 1.11081 1.29274 0.85291 0.77856 0.77346 0.79744 1.20513 1.22797 1.20498 0.92210 0.91619 0.94221 0.89459 0.89308 0.88209 0.87078 0.75129 0.90959 0.91316 0.89502 0.87965 0.87478 0.90335 0.91407 0.91779 0.88807 0.87819 0.91393 0.93654 0.79820 0.94335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.02 9.02 71.98 0.65 -3.37 16 2 C -0.10 -3.11 2.46 -10.72 -0.03 -3.13 16 3 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 4 C 0.13 3.23 5.71 86.36 0.49 3.73 16 5 N -0.60 -14.41 2.97 -818.92 -2.43 -16.84 16 6 C 0.52 12.78 7.77 87.66 0.68 13.46 16 7 O -0.57 -16.84 15.08 -3.03 -0.05 -16.89 16 8 C 0.12 2.70 4.50 85.63 0.39 3.09 16 9 N -0.73 -16.50 5.49 -482.28 -2.65 -19.14 16 10 C 0.72 18.29 8.49 179.06 1.52 19.81 16 11 O -0.63 -20.67 16.60 -4.00 -0.07 -20.74 16 12 N -0.64 -12.03 3.33 -829.75 -2.76 -14.79 16 13 C 0.09 1.06 6.14 86.73 0.53 1.59 16 14 C -0.12 -0.75 6.95 31.78 0.22 -0.53 16 15 C -0.12 -0.89 7.08 32.00 0.23 -0.66 16 16 C 0.11 1.69 6.91 86.86 0.60 2.29 16 17 C 0.11 2.44 6.34 86.36 0.55 2.99 16 18 C -0.14 -4.49 5.66 30.67 0.17 -4.32 16 19 C 0.18 6.36 2.19 45.02 0.10 6.46 16 20 H 0.05 1.81 8.08 -2.39 -0.02 1.80 16 21 N -0.73 -34.94 4.41 -322.80 -1.42 -36.37 16 22 C -0.23 -12.18 9.93 84.03 0.83 -11.35 16 23 H 0.08 3.93 7.83 -2.91 -0.02 3.91 16 24 C -0.08 -4.40 5.50 84.86 0.47 -3.94 16 25 N -0.97 -58.85 13.06 21.65 0.28 -58.57 16 26 Si 0.97 45.51 29.55 68.60 2.03 47.54 16 27 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 28 H -0.30 -14.52 7.11 99.48 0.71 -13.82 16 29 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 30 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.04 1.50 7.36 -2.38 -0.02 1.49 16 33 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.09 2.32 7.01 -2.39 -0.02 2.30 16 35 H 0.10 2.22 7.69 -2.39 -0.02 2.20 16 36 H 0.11 2.16 7.94 -2.39 -0.02 2.14 16 37 H 0.41 8.71 6.42 -92.71 -0.60 8.12 16 38 H 0.07 0.80 8.14 -2.38 -0.02 0.79 16 39 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.09 0.43 8.14 -2.39 -0.02 0.41 16 41 H 0.10 0.30 8.14 -2.38 -0.02 0.28 16 42 H 0.11 0.35 8.14 -2.38 -0.02 0.34 16 43 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 44 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 45 H 0.06 1.13 8.03 -2.38 -0.02 1.12 16 46 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 47 H 0.10 1.87 5.93 -2.39 -0.01 1.85 16 48 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 49 H 0.04 1.54 8.14 -2.39 -0.02 1.53 16 50 H 0.37 19.56 7.50 -92.71 -0.70 18.87 16 51 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 Total: -1.00 -72.76 402.58 -0.02 -72.79 By element: Atomic # 1 Polarization: 37.25 SS G_CDS: -0.36 Total: 36.89 kcal Atomic # 6 Polarization: 18.72 SS G_CDS: 7.40 Total: 26.12 kcal Atomic # 7 Polarization: -136.73 SS G_CDS: -8.98 Total: -145.71 kcal Atomic # 8 Polarization: -37.52 SS G_CDS: -0.11 Total: -37.63 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -72.76 -0.02 -72.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698898370.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.670 kcal (2) G-P(sol) polarization free energy of solvation -72.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.94 seconds