Wall clock time and date at job start Tue Mar 31 2020 21:34:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50697 * 109.47136 * 2 1 4 4 O 1.21276 * 119.99969 * 0.02562 * 3 2 1 5 5 N 1.34783 * 120.00159 * 179.97438 * 3 2 1 6 6 C 1.47073 * 120.88066 * 180.02562 * 5 3 2 7 7 C 1.53237 * 108.68215 * 128.91850 * 6 5 3 8 8 N 1.46904 * 109.34024 * 53.73120 * 7 6 5 9 9 C 1.46900 * 110.99710 * 172.75041 * 8 7 6 10 10 H 1.09003 * 110.27825 * 59.58092 * 9 8 7 11 11 C 1.54597 * 110.30944 * 297.38407 * 9 8 7 12 12 C 1.54936 * 102.92545 * 219.13091 * 11 9 8 13 13 N 1.48530 * 103.22571 * 37.41187 * 12 11 9 14 14 C 1.46894 * 111.00292 * 200.27841 * 13 12 11 15 15 C 1.50702 * 109.47548 * 287.40169 * 14 13 12 16 16 O 1.21296 * 119.99516 * 359.97438 * 15 14 13 17 17 N 1.34769 * 120.00227 * 179.97438 * 15 14 13 18 18 C 1.37105 * 119.99913 * 179.97438 * 17 15 14 19 19 H 1.08002 * 120.00185 * 359.97438 * 18 17 15 20 20 C 1.38953 * 119.99962 * 179.97438 * 18 17 15 21 21 N 1.31403 * 119.99789 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99763 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47205 * 0.02562 * 22 20 18 24 24 H 1.48496 * 109.47122 * 119.99875 * 22 20 18 25 25 H 1.48501 * 109.46826 * 240.00251 * 22 20 18 26 26 C 1.47903 * 105.82427 * 320.79542 * 13 12 11 27 27 C 1.46900 * 111.26665 * 296.89510 * 8 7 6 28 28 C 1.47148 * 120.92093 * 359.75904 * 5 3 2 29 29 H 1.09004 * 109.47237 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47217 * 299.99860 * 1 2 3 31 31 H 1.09001 * 109.47018 * 60.00498 * 1 2 3 32 32 H 1.08996 * 109.47246 * 239.99633 * 2 1 3 33 33 H 1.09007 * 109.46552 * 120.00019 * 2 1 3 34 34 H 1.08998 * 109.63116 * 9.10792 * 6 5 3 35 35 H 1.09002 * 109.62634 * 248.72271 * 6 5 3 36 36 H 1.09003 * 109.49317 * 173.68885 * 7 6 5 37 37 H 1.09002 * 109.49272 * 293.77213 * 7 6 5 38 38 H 1.09003 * 110.72519 * 337.49070 * 11 9 8 39 39 H 1.08997 * 110.72434 * 100.76968 * 11 9 8 40 40 H 1.09001 * 110.66489 * 278.97792 * 12 11 9 41 41 H 1.08999 * 110.81044 * 155.91596 * 12 11 9 42 42 H 1.08999 * 109.46999 * 47.39805 * 14 13 12 43 43 H 1.08999 * 109.47692 * 167.39782 * 14 13 12 44 44 H 0.96997 * 120.00735 * 359.97438 * 17 15 14 45 45 H 0.97006 * 119.99916 * 180.02562 * 21 20 18 46 46 H 1.08995 * 109.91713 * 265.97938 * 26 13 12 47 47 H 1.08995 * 110.08199 * 144.76988 * 26 13 12 48 48 H 1.08997 * 109.48960 * 183.07085 * 27 8 7 49 49 H 1.09005 * 109.49167 * 303.14100 * 27 8 7 50 50 H 1.08998 * 109.46522 * 111.37527 * 28 5 3 51 51 H 1.09004 * 109.80584 * 350.98055 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3426 0.0005 5 7 3.3574 1.6671 0.0005 6 6 3.8689 3.0460 0.0011 7 6 4.8942 3.1888 1.1309 8 7 5.9197 2.1462 0.9918 9 6 7.0130 2.3518 1.9512 10 1 6.6296 2.3289 2.9714 11 6 7.7251 3.6956 1.6734 12 6 9.2170 3.3533 1.9130 13 7 9.3406 1.9755 1.3719 14 6 10.5224 1.2981 1.9217 15 6 11.7681 1.8841 1.3087 16 8 11.6800 2.7780 0.4935 17 7 12.9800 1.4151 1.6661 18 6 14.1132 1.9480 1.1079 19 1 14.0348 2.7433 0.3815 20 6 15.3627 1.4648 1.4769 21 7 15.4581 0.4968 2.3604 22 14 16.9067 2.1913 0.7169 23 1 16.5303 3.2608 -0.2421 24 1 17.7621 2.7651 1.7865 25 1 17.6551 1.1261 0.0025 26 6 8.0982 1.2754 1.7638 27 6 5.3386 0.8047 1.1355 28 6 4.3315 0.5642 0.0064 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8932 -0.5139 0.8901 34 1 3.0458 3.7418 0.1635 35 1 4.3459 3.2600 -0.9554 36 1 5.3639 4.1708 1.0740 37 1 4.3931 3.0800 2.0928 38 1 7.5627 4.0124 0.6431 39 1 7.3883 4.4621 2.3713 40 1 9.4495 3.3708 2.9777 41 1 9.8643 4.0402 1.3678 42 1 10.5501 1.4358 3.0026 43 1 10.4707 0.2338 1.6924 44 1 13.0505 0.7006 2.3183 45 1 16.3304 0.1597 2.6183 46 1 8.2539 0.7383 2.6993 47 1 7.7985 0.5785 0.9811 48 1 6.1306 0.0577 1.0820 49 1 4.8313 0.7292 2.0974 50 1 4.8539 0.5358 -0.9499 51 1 3.8167 -0.3824 0.1706 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699807078.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:51 Heat of formation + Delta-G solvation = -46.738792 kcal Electronic energy + Delta-G solvation = -29677.758574 eV Core-core repulsion = 25612.373799 eV Total energy + Delta-G solvation = -4065.384775 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.65895 -39.49464 -38.22155 -37.07914 -34.69501 -33.82405 -33.30234 -31.66888 -31.34869 -30.92210 -28.77062 -27.44314 -25.93565 -24.80678 -24.25414 -23.55190 -21.62197 -20.95822 -20.20317 -19.22005 -19.11145 -17.85857 -17.74960 -16.55742 -16.19473 -16.09420 -15.70308 -15.65522 -15.23257 -14.88221 -14.53970 -14.43556 -14.21776 -14.18001 -13.79638 -13.74424 -13.13381 -13.05112 -12.98791 -12.55566 -12.43673 -12.30211 -12.16653 -11.92449 -11.84221 -11.77726 -11.57059 -11.53362 -11.37832 -11.18268 -11.07253 -10.97565 -10.85646 -10.71366 -10.33122 -10.20718 -10.07849 -9.48361 -9.10900 -8.56121 -8.43411 -7.96585 -7.90159 -6.40073 -3.80545 2.30396 2.60334 3.17332 3.27694 3.35054 3.50139 3.93499 4.04124 4.10669 4.27598 4.39214 4.48235 4.60844 4.66507 4.70356 4.78413 4.84609 4.89967 4.96528 5.03627 5.08119 5.18071 5.22436 5.26856 5.31628 5.39114 5.40048 5.43652 5.47874 5.53379 5.57287 5.64806 5.74507 5.77672 5.81620 5.83054 5.84229 5.89710 6.11300 6.19169 6.30619 6.42137 6.74740 6.80973 7.07025 7.19682 7.26512 7.57097 7.84010 8.08825 8.64414 9.20644 9.57143 10.09445 10.77943 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.032623 B = 0.001810 C = 0.001772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.092148 B =15468.210242 C =15800.156786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.144 4.144 3 C 0.513 3.487 4 O -0.545 6.545 5 N -0.615 5.615 6 C 0.116 3.884 7 C 0.042 3.958 8 N -0.523 5.523 9 C 0.077 3.923 10 H 0.045 0.955 11 C -0.115 4.115 12 C 0.042 3.958 13 N -0.485 5.485 14 C 0.036 3.964 15 C 0.447 3.553 16 O -0.575 6.575 17 N -0.567 5.567 18 C -0.297 4.297 19 H 0.103 0.897 20 C 0.021 3.979 21 N -0.903 5.903 22 Si 0.929 3.071 23 H -0.268 1.268 24 H -0.282 1.282 25 H -0.282 1.282 26 C 0.040 3.960 27 C 0.035 3.965 28 C 0.112 3.888 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.077 0.923 36 H 0.091 0.909 37 H 0.035 0.965 38 H 0.088 0.912 39 H 0.065 0.935 40 H 0.036 0.964 41 H 0.100 0.900 42 H 0.048 0.952 43 H 0.087 0.913 44 H 0.391 0.609 45 H 0.270 0.730 46 H 0.041 0.959 47 H 0.088 0.912 48 H 0.095 0.905 49 H 0.036 0.964 50 H 0.081 0.919 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.343 -3.243 0.855 25.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.184 4.184 3 C 0.302 3.698 4 O -0.422 6.422 5 N -0.349 5.349 6 C -0.007 4.007 7 C -0.086 4.086 8 N -0.248 5.248 9 C -0.032 4.032 10 H 0.063 0.937 11 C -0.153 4.153 12 C -0.085 4.085 13 N -0.209 5.209 14 C -0.096 4.096 15 C 0.232 3.768 16 O -0.459 6.459 17 N -0.205 5.205 18 C -0.426 4.426 19 H 0.121 0.879 20 C -0.180 4.180 21 N -0.545 5.545 22 Si 0.756 3.244 23 H -0.192 1.192 24 H -0.208 1.208 25 H -0.208 1.208 26 C -0.088 4.088 27 C -0.094 4.094 28 C -0.012 4.012 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.112 0.888 33 H 0.110 0.890 34 H 0.112 0.888 35 H 0.095 0.905 36 H 0.110 0.890 37 H 0.053 0.947 38 H 0.106 0.894 39 H 0.084 0.916 40 H 0.054 0.946 41 H 0.118 0.882 42 H 0.066 0.934 43 H 0.105 0.895 44 H 0.224 0.776 45 H 0.080 0.920 46 H 0.059 0.941 47 H 0.106 0.894 48 H 0.113 0.887 49 H 0.055 0.945 50 H 0.100 0.900 51 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -25.390 -2.203 -0.664 25.494 hybrid contribution 0.727 -0.452 1.934 2.115 sum -24.663 -2.655 1.270 24.838 Atomic orbital electron populations 1.21535 0.92981 1.01607 1.03332 1.21663 0.98631 0.93877 1.04216 1.20817 0.81527 0.91972 0.75530 1.90688 1.54767 1.46678 1.50072 1.48252 1.05531 1.07699 1.73442 1.21695 0.96708 0.83054 0.99203 1.22477 0.92395 0.96597 0.97167 1.62034 1.09620 1.01759 1.51437 1.22499 0.91074 0.96853 0.92763 0.93711 1.22595 0.94735 0.95008 1.02965 1.23248 0.95912 0.91795 0.97591 1.64463 0.99787 1.01690 1.54934 1.22073 0.91302 0.99249 0.96931 1.19703 0.84016 0.86674 0.86441 1.90512 1.86372 1.32574 1.36396 1.41868 1.04493 1.34680 1.39414 1.19750 0.83031 1.17861 1.21973 0.87879 1.25248 0.99325 0.96550 0.96907 1.69619 1.25556 1.27091 1.32239 0.85809 0.80931 0.78859 0.78805 1.19227 1.20836 1.20781 1.23018 0.90019 0.96269 0.99518 1.22554 0.97504 0.92299 0.97018 1.21886 0.89890 0.89362 1.00020 0.92032 0.92062 0.91975 0.88824 0.88989 0.88812 0.90495 0.89029 0.94656 0.89373 0.91588 0.94554 0.88219 0.93381 0.89459 0.77580 0.92002 0.94086 0.89423 0.88659 0.94542 0.90030 0.89313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.88 9.20 37.16 0.34 -0.54 16 2 C -0.14 -0.86 4.79 -27.89 -0.13 -1.00 16 3 C 0.51 4.94 7.71 -10.98 -0.08 4.86 16 4 O -0.54 -7.30 15.43 5.56 0.09 -7.21 16 5 N -0.61 -5.31 3.02 -172.44 -0.52 -5.83 16 6 C 0.12 1.05 6.59 -3.61 -0.02 1.03 16 7 C 0.04 0.37 5.47 -3.70 -0.02 0.35 16 8 N -0.52 -5.01 4.43 -224.74 -0.99 -6.00 16 9 C 0.08 0.82 2.73 -66.35 -0.18 0.63 16 10 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 11 C -0.11 -1.36 5.44 -24.87 -0.14 -1.49 16 12 C 0.04 0.65 5.94 -1.90 -0.01 0.64 16 13 N -0.48 -7.95 4.90 -231.90 -1.14 -9.08 16 14 C 0.04 0.64 5.19 -4.98 -0.03 0.61 16 15 C 0.45 10.51 7.61 -10.99 -0.08 10.43 16 16 O -0.58 -15.54 14.64 5.54 0.08 -15.45 16 17 N -0.57 -14.35 5.29 -10.96 -0.06 -14.41 16 18 C -0.30 -8.26 9.68 -14.93 -0.14 -8.41 16 19 H 0.10 3.02 7.16 -52.49 -0.38 2.65 16 20 C 0.02 0.56 5.50 -17.47 -0.10 0.46 16 21 N -0.90 -24.54 13.05 55.50 0.72 -23.82 16 22 Si 0.93 21.05 29.55 -169.99 -5.02 16.03 16 23 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 24 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 25 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 26 C 0.04 0.49 5.78 -2.75 -0.02 0.47 16 27 C 0.03 0.27 5.35 -3.72 -0.02 0.25 16 28 C 0.11 0.73 6.49 -3.59 -0.02 0.71 16 29 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.46 8.10 -51.93 -0.42 0.04 16 31 H 0.06 0.47 8.10 -51.93 -0.42 0.05 16 32 H 0.09 0.41 8.01 -51.93 -0.42 -0.01 16 33 H 0.09 0.40 7.66 -51.92 -0.40 0.00 16 34 H 0.09 0.93 7.06 -51.93 -0.37 0.56 16 35 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.09 0.77 6.87 -51.93 -0.36 0.41 16 37 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 38 H 0.09 1.12 7.88 -51.93 -0.41 0.71 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.04 0.54 7.81 -51.93 -0.41 0.13 16 41 H 0.10 1.84 7.10 -51.93 -0.37 1.47 16 42 H 0.05 0.78 7.83 -51.93 -0.41 0.37 16 43 H 0.09 1.39 8.08 -51.93 -0.42 0.97 16 44 H 0.39 9.45 7.90 -40.82 -0.32 9.13 16 45 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 46 H 0.04 0.46 7.77 -51.93 -0.40 0.05 16 47 H 0.09 1.03 6.15 -51.93 -0.32 0.71 16 48 H 0.10 0.68 5.95 -51.93 -0.31 0.37 16 49 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 50 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 51 H 0.09 0.36 6.05 -51.93 -0.31 0.05 16 LS Contribution 395.89 15.07 5.97 5.97 Total: -1.00 -33.63 395.89 -10.06 -43.69 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: -8.53 Total: 7.11 kcal Atomic # 6 Polarization: 9.67 SS G_CDS: -0.66 Total: 9.01 kcal Atomic # 7 Polarization: -57.15 SS G_CDS: -1.99 Total: -59.14 kcal Atomic # 8 Polarization: -22.83 SS G_CDS: 0.17 Total: -22.67 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.63 -10.06 -43.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699807078.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.045 kcal (2) G-P(sol) polarization free energy of solvation -33.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds