Wall clock time and date at job start Tue Mar 31 2020 21:34:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50697 * 109.47136 * 2 1 4 4 O 1.21276 * 119.99969 * 0.02562 * 3 2 1 5 5 N 1.34783 * 120.00159 * 179.97438 * 3 2 1 6 6 C 1.47073 * 120.88066 * 180.02562 * 5 3 2 7 7 C 1.53237 * 108.68215 * 128.91850 * 6 5 3 8 8 N 1.46904 * 109.34024 * 53.73120 * 7 6 5 9 9 C 1.46900 * 110.99710 * 172.75041 * 8 7 6 10 10 H 1.09003 * 110.27825 * 59.58092 * 9 8 7 11 11 C 1.54597 * 110.30944 * 297.38407 * 9 8 7 12 12 C 1.54936 * 102.92545 * 219.13091 * 11 9 8 13 13 N 1.48530 * 103.22571 * 37.41187 * 12 11 9 14 14 C 1.46894 * 111.00292 * 200.27841 * 13 12 11 15 15 C 1.50702 * 109.47548 * 287.40169 * 14 13 12 16 16 O 1.21296 * 119.99516 * 359.97438 * 15 14 13 17 17 N 1.34769 * 120.00227 * 179.97438 * 15 14 13 18 18 C 1.37105 * 119.99913 * 179.97438 * 17 15 14 19 19 H 1.08002 * 120.00185 * 359.97438 * 18 17 15 20 20 C 1.38953 * 119.99962 * 179.97438 * 18 17 15 21 21 N 1.31403 * 119.99789 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99763 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47205 * 0.02562 * 22 20 18 24 24 H 1.48496 * 109.47122 * 119.99875 * 22 20 18 25 25 H 1.48501 * 109.46826 * 240.00251 * 22 20 18 26 26 C 1.47903 * 105.82427 * 320.79542 * 13 12 11 27 27 C 1.46900 * 111.26665 * 296.89510 * 8 7 6 28 28 C 1.47148 * 120.92093 * 359.75904 * 5 3 2 29 29 H 1.09004 * 109.47237 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47217 * 299.99860 * 1 2 3 31 31 H 1.09001 * 109.47018 * 60.00498 * 1 2 3 32 32 H 1.08996 * 109.47246 * 239.99633 * 2 1 3 33 33 H 1.09007 * 109.46552 * 120.00019 * 2 1 3 34 34 H 1.08998 * 109.63116 * 9.10792 * 6 5 3 35 35 H 1.09002 * 109.62634 * 248.72271 * 6 5 3 36 36 H 1.09003 * 109.49317 * 173.68885 * 7 6 5 37 37 H 1.09002 * 109.49272 * 293.77213 * 7 6 5 38 38 H 1.09003 * 110.72519 * 337.49070 * 11 9 8 39 39 H 1.08997 * 110.72434 * 100.76968 * 11 9 8 40 40 H 1.09001 * 110.66489 * 278.97792 * 12 11 9 41 41 H 1.08999 * 110.81044 * 155.91596 * 12 11 9 42 42 H 1.08999 * 109.46999 * 47.39805 * 14 13 12 43 43 H 1.08999 * 109.47692 * 167.39782 * 14 13 12 44 44 H 0.96997 * 120.00735 * 359.97438 * 17 15 14 45 45 H 0.97006 * 119.99916 * 180.02562 * 21 20 18 46 46 H 1.08995 * 109.91713 * 265.97938 * 26 13 12 47 47 H 1.08995 * 110.08199 * 144.76988 * 26 13 12 48 48 H 1.08997 * 109.48960 * 183.07085 * 27 8 7 49 49 H 1.09005 * 109.49167 * 303.14100 * 27 8 7 50 50 H 1.08998 * 109.46522 * 111.37527 * 28 5 3 51 51 H 1.09004 * 109.80584 * 350.98055 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3426 0.0005 5 7 3.3574 1.6671 0.0005 6 6 3.8689 3.0460 0.0011 7 6 4.8942 3.1888 1.1309 8 7 5.9197 2.1462 0.9918 9 6 7.0130 2.3518 1.9512 10 1 6.6296 2.3289 2.9714 11 6 7.7251 3.6956 1.6734 12 6 9.2170 3.3533 1.9130 13 7 9.3406 1.9755 1.3719 14 6 10.5224 1.2981 1.9217 15 6 11.7681 1.8841 1.3087 16 8 11.6800 2.7780 0.4935 17 7 12.9800 1.4151 1.6661 18 6 14.1132 1.9480 1.1079 19 1 14.0348 2.7433 0.3815 20 6 15.3627 1.4648 1.4769 21 7 15.4581 0.4968 2.3604 22 14 16.9067 2.1913 0.7169 23 1 16.5303 3.2608 -0.2421 24 1 17.7621 2.7651 1.7865 25 1 17.6551 1.1261 0.0025 26 6 8.0982 1.2754 1.7638 27 6 5.3386 0.8047 1.1355 28 6 4.3315 0.5642 0.0064 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8932 -0.5139 0.8901 34 1 3.0458 3.7418 0.1635 35 1 4.3459 3.2600 -0.9554 36 1 5.3639 4.1708 1.0740 37 1 4.3931 3.0800 2.0928 38 1 7.5627 4.0124 0.6431 39 1 7.3883 4.4621 2.3713 40 1 9.4495 3.3708 2.9777 41 1 9.8643 4.0402 1.3678 42 1 10.5501 1.4358 3.0026 43 1 10.4707 0.2338 1.6924 44 1 13.0505 0.7006 2.3183 45 1 16.3304 0.1597 2.6183 46 1 8.2539 0.7383 2.6993 47 1 7.7985 0.5785 0.9811 48 1 6.1306 0.0577 1.0820 49 1 4.8313 0.7292 2.0974 50 1 4.8539 0.5358 -0.9499 51 1 3.8167 -0.3824 0.1706 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699807078.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:50 Heat of formation + Delta-G solvation = -72.549554 kcal Electronic energy + Delta-G solvation = -29678.877813 eV Core-core repulsion = 25612.373799 eV Total energy + Delta-G solvation = -4066.504014 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.39723 -40.62160 -39.68040 -38.19381 -35.97556 -35.42819 -33.86995 -33.28692 -32.43164 -32.00479 -29.69648 -28.64155 -27.19071 -25.81342 -25.42995 -24.34020 -22.32588 -22.11679 -21.06003 -20.96468 -19.88371 -19.78489 -18.44874 -17.85693 -17.09012 -17.00642 -16.74491 -16.69069 -16.36083 -16.11526 -15.89535 -15.63215 -15.36511 -15.14027 -14.83496 -14.80477 -14.50326 -14.09481 -13.85968 -13.65228 -13.50024 -13.15183 -13.09174 -13.04788 -12.94539 -12.79710 -12.69907 -12.50455 -12.38662 -12.24814 -12.16671 -12.09980 -12.03188 -11.94791 -11.80676 -11.68230 -11.46668 -10.81132 -10.28037 -9.98345 -9.82212 -9.30803 -9.17221 -8.45090 -5.93262 1.37272 1.42315 1.56400 1.61136 1.97188 2.08876 2.29807 2.75202 2.90281 3.21777 3.40095 3.53750 3.60667 3.75943 3.91734 4.00226 4.14881 4.19082 4.23989 4.25534 4.30343 4.32670 4.34374 4.37108 4.46083 4.47887 4.54940 4.55964 4.67534 4.72055 4.76310 4.84649 4.87737 4.92638 4.94004 4.99280 5.04914 5.06625 5.12129 5.23489 5.32373 5.42835 5.46802 5.89712 5.96850 6.04572 6.11023 6.17681 6.42425 6.63546 7.14965 7.15749 7.59597 8.16242 8.72640 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.032623 B = 0.001810 C = 0.001772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.092148 B =15468.210242 C =15800.156786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.138 4.138 3 C 0.504 3.496 4 O -0.592 6.592 5 N -0.615 5.615 6 C 0.117 3.883 7 C 0.051 3.949 8 N -0.535 5.535 9 C 0.087 3.913 10 H 0.060 0.940 11 C -0.105 4.105 12 C 0.041 3.959 13 N -0.511 5.511 14 C 0.050 3.950 15 C 0.442 3.558 16 O -0.616 6.616 17 N -0.576 5.576 18 C -0.331 4.331 19 H 0.077 0.923 20 C -0.013 4.013 21 N -0.921 5.921 22 Si 0.992 3.008 23 H -0.275 1.275 24 H -0.271 1.271 25 H -0.271 1.271 26 C 0.043 3.957 27 C 0.034 3.966 28 C 0.111 3.889 29 H 0.085 0.915 30 H 0.044 0.956 31 H 0.044 0.956 32 H 0.117 0.883 33 H 0.117 0.883 34 H 0.080 0.920 35 H 0.072 0.928 36 H 0.092 0.908 37 H 0.034 0.966 38 H 0.074 0.926 39 H 0.086 0.914 40 H 0.043 0.957 41 H 0.057 0.943 42 H 0.069 0.931 43 H 0.110 0.890 44 H 0.396 0.604 45 H 0.277 0.723 46 H 0.060 0.940 47 H 0.094 0.906 48 H 0.105 0.895 49 H 0.042 0.958 50 H 0.079 0.921 51 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.967 -5.306 1.701 26.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.177 4.177 3 C 0.295 3.705 4 O -0.473 6.473 5 N -0.348 5.348 6 C -0.007 4.007 7 C -0.078 4.078 8 N -0.260 5.260 9 C -0.022 4.022 10 H 0.077 0.923 11 C -0.143 4.143 12 C -0.087 4.087 13 N -0.236 5.236 14 C -0.082 4.082 15 C 0.230 3.770 16 O -0.501 6.501 17 N -0.214 5.214 18 C -0.461 4.461 19 H 0.095 0.905 20 C -0.213 4.213 21 N -0.562 5.562 22 Si 0.816 3.184 23 H -0.199 1.199 24 H -0.196 1.196 25 H -0.196 1.196 26 C -0.084 4.084 27 C -0.094 4.094 28 C -0.011 4.011 29 H 0.104 0.896 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.135 0.865 33 H 0.135 0.865 34 H 0.098 0.902 35 H 0.091 0.909 36 H 0.110 0.890 37 H 0.052 0.948 38 H 0.093 0.907 39 H 0.105 0.895 40 H 0.061 0.939 41 H 0.076 0.924 42 H 0.087 0.913 43 H 0.128 0.872 44 H 0.229 0.771 45 H 0.086 0.914 46 H 0.078 0.922 47 H 0.112 0.888 48 H 0.123 0.877 49 H 0.060 0.940 50 H 0.098 0.902 51 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -26.011 -4.308 0.200 26.366 hybrid contribution 0.890 0.203 1.642 1.878 sum -25.121 -4.106 1.842 25.521 Atomic orbital electron populations 1.21536 0.93609 1.02611 1.01698 1.21733 0.98038 0.91527 1.06424 1.21558 0.81367 0.93117 0.74470 1.90667 1.55942 1.48397 1.52332 1.48377 1.05807 1.07950 1.72633 1.21593 0.96282 0.83621 0.99158 1.22380 0.92033 0.96592 0.96792 1.62004 1.09779 1.02957 1.51302 1.22359 0.90956 0.95191 0.93698 0.92262 1.22497 0.92459 0.96564 1.02772 1.23145 0.97514 0.90936 0.97119 1.64371 1.00907 1.02365 1.55968 1.21919 0.88914 0.99870 0.97450 1.20807 0.85234 0.85607 0.85377 1.90487 1.87207 1.34298 1.38145 1.41934 1.04695 1.35044 1.39768 1.19680 0.84824 1.18564 1.22983 0.90489 1.26002 1.01587 0.96653 0.97028 1.69673 1.26635 1.27410 1.32504 0.84889 0.77312 0.78134 0.78107 1.19942 1.19635 1.19597 1.23071 0.88263 0.96480 1.00623 1.22640 0.97943 0.91198 0.97617 1.22066 0.89494 0.89876 0.99627 0.89592 0.93698 0.93702 0.86507 0.86475 0.90169 0.90936 0.88970 0.94759 0.90688 0.89546 0.93892 0.92426 0.91301 0.87227 0.77056 0.91372 0.92173 0.88764 0.87725 0.94007 0.90239 0.86107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.20 71.98 0.66 -0.91 16 2 C -0.14 -1.28 4.79 29.85 0.14 -1.13 16 3 C 0.50 9.14 7.71 87.66 0.68 9.81 16 4 O -0.59 -16.13 15.43 -3.02 -0.05 -16.17 16 5 N -0.61 -9.64 3.02 -817.86 -2.47 -12.11 16 6 C 0.12 2.07 6.59 86.35 0.57 2.64 16 7 C 0.05 0.82 5.47 86.38 0.47 1.30 16 8 N -0.53 -9.04 4.43 -864.93 -3.83 -12.87 16 9 C 0.09 1.62 2.73 45.80 0.13 1.75 16 10 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 11 C -0.10 -2.36 5.44 31.80 0.17 -2.19 16 12 C 0.04 1.26 5.94 86.65 0.51 1.77 16 13 N -0.51 -16.20 4.90 -887.60 -4.35 -20.56 16 14 C 0.05 1.70 5.19 85.56 0.44 2.15 16 15 C 0.44 21.16 7.61 87.66 0.67 21.83 16 16 O -0.62 -34.50 14.64 -3.08 -0.05 -34.54 16 17 N -0.58 -29.65 5.29 -306.98 -1.62 -31.27 16 18 C -0.33 -18.90 9.68 84.04 0.81 -18.09 16 19 H 0.08 4.72 7.16 -2.91 -0.02 4.70 16 20 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 21 N -0.92 -49.59 13.05 21.66 0.28 -49.31 16 22 Si 0.99 43.11 29.55 68.60 2.03 45.14 16 23 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 24 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 25 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 26 C 0.04 0.93 5.78 86.45 0.50 1.43 16 27 C 0.03 0.41 5.35 86.37 0.46 0.87 16 28 C 0.11 1.12 6.49 86.32 0.56 1.68 16 29 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.04 0.65 8.10 -2.39 -0.02 0.63 16 31 H 0.04 0.66 8.10 -2.39 -0.02 0.64 16 32 H 0.12 0.58 8.01 -2.39 -0.02 0.56 16 33 H 0.12 0.54 7.66 -2.38 -0.02 0.52 16 34 H 0.08 1.64 7.06 -2.39 -0.02 1.63 16 35 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.09 1.47 6.87 -2.39 -0.02 1.45 16 37 H 0.03 0.57 8.14 -2.39 -0.02 0.55 16 38 H 0.07 1.90 7.88 -2.39 -0.02 1.88 16 39 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.04 1.23 7.81 -2.39 -0.02 1.22 16 41 H 0.06 2.24 7.10 -2.39 -0.02 2.22 16 42 H 0.07 2.07 7.83 -2.39 -0.02 2.06 16 43 H 0.11 3.24 8.08 -2.39 -0.02 3.22 16 44 H 0.40 19.22 7.90 -92.71 -0.73 18.49 16 45 H 0.28 13.91 8.31 -92.70 -0.77 13.14 16 46 H 0.06 1.10 7.77 -2.39 -0.02 1.08 16 47 H 0.09 1.92 6.15 -2.39 -0.01 1.90 16 48 H 0.10 1.09 5.95 -2.39 -0.01 1.07 16 49 H 0.04 0.48 8.14 -2.38 -0.02 0.46 16 50 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 51 H 0.12 0.45 6.05 -2.38 -0.01 0.43 16 Total: -1.00 -75.86 395.89 -2.61 -78.47 By element: Atomic # 1 Polarization: 30.37 SS G_CDS: 0.20 Total: 30.57 kcal Atomic # 6 Polarization: 15.42 SS G_CDS: 7.25 Total: 22.67 kcal Atomic # 7 Polarization: -114.13 SS G_CDS: -11.99 Total: -126.12 kcal Atomic # 8 Polarization: -50.63 SS G_CDS: -0.09 Total: -50.72 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -75.86 -2.61 -78.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699807078.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.916 kcal (2) G-P(sol) polarization free energy of solvation -75.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds