Wall clock time and date at job start Tue Mar 31 2020 22:04:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.09001 * 109.47259 * 2 1
4 4 N 1.46503 * 109.47044 * 240.00395 * 2 1 3
5 5 C 1.34776 * 120.00199 * 84.99871 * 4 2 1
6 6 O 1.21281 * 119.99999 * 0.02562 * 5 4 2
7 7 C 1.50703 * 120.00004 * 179.97438 * 5 4 2
8 8 N 1.46498 * 109.46890 * 180.02562 * 7 5 4
9 9 C 1.46386 * 119.32714 * 90.00499 * 8 7 5
10 10 C 1.53244 * 109.15144 * 150.91703 * 9 8 7
11 11 C 1.53240 * 108.56107 * 55.47937 * 10 9 8
12 12 N 1.46376 * 109.15454 * 304.51216 * 11 10 9
13 13 C 1.34137 * 121.33906 * 29.32692 * 12 11 10
14 14 O 1.21589 * 118.70016 * 179.14566 * 13 12 11
15 15 C 1.52997 * 109.47268 * 120.00301 * 2 1 3
16 16 C 1.53047 * 109.46045 * 60.02638 * 15 2 1
17 17 C 1.53190 * 109.31316 * 178.60219 * 16 15 2
18 18 N 1.46922 * 108.76586 * 54.65540 * 17 16 15
19 19 C 1.36938 * 120.63430 * 126.40377 * 18 17 16
20 20 H 1.07996 * 119.99617 * 331.83071 * 19 18 17
21 21 C 1.38808 * 120.00427 * 151.82207 * 19 18 17
22 22 N 1.31623 * 119.99673 * 343.08091 * 21 19 18
23 23 Si 1.86800 * 120.00175 * 163.07264 * 21 19 18
24 24 H 1.48499 * 109.46562 * 90.00444 * 23 21 19
25 25 H 1.48493 * 109.47340 * 210.00127 * 23 21 19
26 26 H 1.48495 * 109.47172 * 330.00963 * 23 21 19
27 27 C 1.46934 * 118.73868 * 306.38534 * 18 17 16
28 28 C 1.53033 * 109.46083 * 299.97229 * 15 2 1
29 29 H 1.09001 * 109.46737 * 179.97438 * 1 2 3
30 30 H 1.08993 * 109.46826 * 299.99560 * 1 2 3
31 31 H 1.09000 * 109.47060 * 59.99718 * 1 2 3
32 32 H 0.97003 * 119.99519 * 264.99938 * 4 2 1
33 33 H 1.09001 * 109.46934 * 60.00083 * 7 5 4
34 34 H 1.08998 * 109.47450 * 300.00293 * 7 5 4
35 35 H 1.08996 * 109.52661 * 31.01044 * 9 8 7
36 36 H 1.09003 * 109.52134 * 270.81606 * 9 8 7
37 37 H 1.08997 * 109.62193 * 295.75179 * 10 9 8
38 38 H 1.09002 * 109.77119 * 175.28960 * 10 9 8
39 39 H 1.09006 * 109.51978 * 184.61913 * 11 10 9
40 40 H 1.08994 * 109.58397 * 64.45763 * 11 10 9
41 41 H 0.97003 * 119.33622 * 209.04095 * 12 11 10
42 42 H 1.08996 * 109.46364 * 179.97438 * 15 2 1
43 43 H 1.08999 * 109.49490 * 298.56631 * 16 15 2
44 44 H 1.09000 * 109.49745 * 58.66309 * 16 15 2
45 45 H 1.09002 * 109.59744 * 294.86653 * 17 16 15
46 46 H 1.08997 * 109.70526 * 174.50391 * 17 16 15
47 47 H 0.97005 * 119.99220 * 179.97438 * 22 21 19
48 48 H 1.08996 * 109.58291 * 293.81952 * 27 18 17
49 49 H 1.09000 * 109.70031 * 173.46415 * 27 18 17
50 50 H 1.08997 * 109.50162 * 301.33929 * 28 15 2
51 51 H 1.09010 * 109.49742 * 61.40117 * 28 15 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 7 2.0183 -0.6905 -1.1962
5 6 2.1470 -0.0182 -2.3572
6 8 1.8590 1.1587 -2.4115
7 6 2.6499 -0.7284 -3.5876
8 7 2.6996 0.2131 -4.7088
9 6 3.9225 0.9821 -4.9457
10 6 4.0385 1.2938 -6.4416
11 6 2.7611 2.0111 -6.8909
12 7 1.6014 1.1863 -6.5485
13 6 1.6221 0.3565 -5.4948
14 8 0.6263 -0.2949 -5.2450
15 6 2.0400 -0.7213 1.2492
16 6 1.5303 -2.1644 1.2485
17 6 2.0714 -2.8934 2.4824
18 7 1.7086 -2.1261 3.6817
19 6 1.0455 -2.7252 4.7192
20 1 0.3979 -3.5687 4.5308
21 6 1.2057 -2.2486 6.0130
22 7 2.2202 -1.4618 6.3035
23 14 -0.0183 -2.7236 7.3417
24 1 0.4355 -3.9696 8.0101
25 1 -0.1114 -1.6306 8.3426
26 1 -1.3520 -2.9483 6.7286
27 6 2.0712 -0.7037 3.7468
28 6 1.5304 0.0006 2.4986
29 1 -0.3633 -1.0277 -0.0005
30 1 -0.3633 0.5137 0.8900
31 1 -0.3633 0.5139 -0.8900
32 1 2.2490 -1.6317 -1.1527
33 1 1.9777 -1.5507 -3.8326
34 1 3.6492 -1.1202 -3.3980
35 1 4.7867 0.3994 -4.6269
36 1 3.8819 1.9138 -4.3815
37 1 4.1532 0.3655 -7.0011
38 1 4.9009 1.9367 -6.6185
39 1 2.7913 2.1674 -7.9693
40 1 2.6856 2.9737 -6.3853
41 1 0.8001 1.2439 -7.0922
42 1 3.1300 -0.7216 1.2488
43 1 0.4406 -2.1653 1.2740
44 1 1.8741 -2.6712 0.3468
45 1 3.1564 -2.9727 2.4137
46 1 1.6352 -3.8906 2.5408
47 1 2.3319 -1.1285 7.2076
48 1 3.1561 -0.6044 3.7812
49 1 1.6346 -0.2537 4.6384
50 1 1.8741 1.0349 2.4868
51 1 0.4406 -0.0204 2.5118
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001701013449.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:04:45
Heat of formation + Delta-G solvation = -42.652989 kcal
Electronic energy + Delta-G solvation = -30391.139519 eV
Core-core repulsion = 26325.931917 eV
Total energy + Delta-G solvation = -4065.207601 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.211 amu
Computer time = 1.19 seconds
Orbital eigenvalues (eV)
-41.04231 -39.67367 -37.98393 -36.69904 -35.44102 -34.91819 -32.86176 -31.51418
-31.13696 -29.84644 -29.05843 -28.02352 -25.85305 -25.34853 -23.64129 -23.08090
-22.32057 -20.97664 -20.22436 -19.27661 -18.61165 -17.86479 -17.50961 -17.41276
-16.62455 -16.00952 -15.88131 -15.15600 -14.85541 -14.71760 -14.50048 -14.35715
-14.15375 -14.09708 -13.83835 -13.59599 -13.37541 -13.12854 -12.85403 -12.50289
-12.45692 -12.12777 -12.00786 -11.81625 -11.70513 -11.58607 -11.35768 -11.20257
-10.89169 -10.68085 -10.41752 -10.33684 -10.15786 -10.12837 -10.07039 -9.86691
-9.50275 -9.41265 -9.38372 -8.92508 -8.80891 -8.44614 -6.64249 -5.77231
-3.19322 2.29691 2.68208 2.94573 3.30445 3.38363 3.45620 3.48235
3.53740 4.19816 4.33585 4.51253 4.57599 4.69811 4.80633 4.90820
5.06721 5.10208 5.14403 5.18887 5.21001 5.22151 5.37935 5.42471
5.56909 5.59999 5.72664 5.78793 5.90550 5.93298 6.08667 6.15825
6.19402 6.26005 6.32819 6.42719 6.47651 6.62550 6.67973 6.77317
6.78061 6.80673 6.85185 7.01966 7.40453 7.52221 7.59690 7.68627
7.81358 8.28548 8.36505 8.47342 9.23584 9.87314 10.44112 11.31229
Molecular weight = 338.21amu
Principal moments of inertia in cm(-1)
A = 0.033743 B = 0.002057 C = 0.002037
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 829.595764 B =13606.924988 C =13742.297177
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.162 4.162
2 C 0.147 3.853
3 H 0.081 0.919
4 N -0.721 5.721
5 C 0.496 3.504
6 O -0.536 6.536
7 C 0.112 3.888
8 N -0.604 5.604
9 C 0.112 3.888
10 C -0.151 4.151
11 C 0.109 3.891
12 N -0.738 5.738
13 C 0.717 3.283
14 O -0.595 6.595
15 C -0.084 4.084
16 C -0.129 4.129
17 C 0.146 3.854
18 N -0.592 5.592
19 C -0.251 4.251
20 H 0.064 0.936
21 C 0.001 3.999
22 N -0.903 5.903
23 Si 0.901 3.099
24 H -0.287 1.287
25 H -0.290 1.290
26 H -0.280 1.280
27 C 0.172 3.828
28 C -0.134 4.134
29 H 0.060 0.940
30 H 0.069 0.931
31 H 0.050 0.950
32 H 0.399 0.601
33 H 0.115 0.885
34 H 0.107 0.893
35 H 0.083 0.917
36 H 0.070 0.930
37 H 0.077 0.923
38 H 0.097 0.903
39 H 0.082 0.918
40 H 0.065 0.935
41 H 0.414 0.586
42 H 0.067 0.933
43 H 0.065 0.935
44 H 0.044 0.956
45 H 0.015 0.985
46 H 0.052 0.948
47 H 0.253 0.747
48 H 0.016 0.984
49 H 0.087 0.913
50 H 0.049 0.951
51 H 0.061 0.939
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.108 5.360 -26.768 27.974
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.220 4.220
2 C 0.043 3.957
3 H 0.099 0.901
4 N -0.374 5.374
5 C 0.280 3.720
6 O -0.413 6.413
7 C -0.016 4.016
8 N -0.341 5.341
9 C -0.011 4.011
10 C -0.190 4.190
11 C -0.015 4.015
12 N -0.396 5.396
13 C 0.418 3.582
14 O -0.474 6.474
15 C -0.103 4.103
16 C -0.168 4.168
17 C 0.019 3.981
18 N -0.314 5.314
19 C -0.380 4.380
20 H 0.082 0.918
21 C -0.197 4.197
22 N -0.548 5.548
23 Si 0.731 3.269
24 H -0.214 1.214
25 H -0.216 1.216
26 H -0.205 1.205
27 C 0.046 3.954
28 C -0.174 4.174
29 H 0.079 0.921
30 H 0.088 0.912
31 H 0.069 0.931
32 H 0.234 0.766
33 H 0.133 0.867
34 H 0.125 0.875
35 H 0.101 0.899
36 H 0.088 0.912
37 H 0.096 0.904
38 H 0.116 0.884
39 H 0.101 0.899
40 H 0.084 0.916
41 H 0.251 0.749
42 H 0.085 0.915
43 H 0.083 0.917
44 H 0.063 0.937
45 H 0.033 0.967
46 H 0.071 0.929
47 H 0.063 0.937
48 H 0.034 0.966
49 H 0.105 0.895
50 H 0.067 0.933
51 H 0.079 0.921
Dipole moment (debyes) X Y Z Total
from point charges 5.591 5.931 -26.402 27.631
hybrid contribution -0.619 -0.463 0.573 0.962
sum 4.973 5.468 -25.829 26.866
Atomic orbital electron populations
1.22211 0.95430 1.02359 1.01966 1.21090 0.94232 0.96797 0.83541
0.90110 1.46213 1.67192 1.14180 1.09798 1.21150 0.78093 0.87898
0.84862 1.90677 1.49731 1.16118 1.84748 1.21220 1.03803 0.92322
0.84260 1.46270 1.13364 1.44768 1.29677 1.21624 0.86675 0.96907
0.95892 1.22194 0.98470 1.02259 0.96028 1.21518 0.85061 0.94016
1.00946 1.44875 1.18264 1.45158 1.31260 1.15329 0.82849 0.80401
0.79638 1.90965 1.32834 1.50004 1.73568 1.21309 0.99897 0.95758
0.93317 1.22121 1.01298 0.95014 0.98381 1.20880 0.96108 0.94301
0.86787 1.44035 1.66818 1.05085 1.15500 1.19160 1.18980 1.14303
0.85583 0.91810 1.25041 0.97129 1.00497 0.97072 1.70036 1.27939
1.37588 1.19216 0.86322 0.81323 0.77585 0.81708 1.21449 1.21584
1.20504 1.20755 0.96334 0.83723 0.94579 1.22258 1.01041 0.97931
0.96143 0.92118 0.91212 0.93054 0.76574 0.86672 0.87481 0.89854
0.91150 0.90410 0.88419 0.89922 0.91635 0.74859 0.91505 0.91681
0.93721 0.96705 0.92923 0.93684 0.96580 0.89495 0.93266 0.92062
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.44 8.78 37.16 0.33 -2.11 16
2 C 0.15 2.16 2.40 -67.93 -0.16 1.99 16
3 H 0.08 1.30 7.58 -51.93 -0.39 0.91 16
4 N -0.72 -8.98 5.00 -53.80 -0.27 -9.25 16
5 C 0.50 6.65 7.86 -10.98 -0.09 6.57 16
6 O -0.54 -9.35 16.09 5.56 0.09 -9.26 16
7 C 0.11 1.10 5.83 -5.19 -0.03 1.07 16
8 N -0.60 -6.29 2.30 -181.15 -0.42 -6.71 16
9 C 0.11 0.77 6.55 -3.98 -0.03 0.74 16
10 C -0.15 -0.65 6.20 -26.48 -0.16 -0.82 16
11 C 0.11 0.56 7.20 -3.99 -0.03 0.53 16
12 N -0.74 -6.49 5.58 -65.53 -0.37 -6.86 16
13 C 0.72 9.07 8.18 -88.05 -0.72 8.35 16
14 O -0.60 -10.00 16.50 5.29 0.09 -9.91 16
15 C -0.08 -1.33 2.14 -90.58 -0.19 -1.52 16
16 C -0.13 -2.07 4.81 -26.61 -0.13 -2.20 16
17 C 0.15 2.94 6.52 -3.71 -0.02 2.92 16
18 N -0.59 -14.58 2.99 -172.32 -0.52 -15.09 16
19 C -0.25 -6.84 9.58 -15.06 -0.14 -6.98 16
20 H 0.06 1.71 7.88 -52.49 -0.41 1.30 16
21 C 0.00 0.03 4.92 -17.43 -0.09 -0.06 16
22 N -0.90 -26.18 11.19 55.49 0.62 -25.56 16
23 Si 0.90 21.73 29.59 -169.99 -5.03 16.70 16
24 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16
25 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16
26 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16
27 C 0.17 4.04 5.30 -3.71 -0.02 4.02 16
28 C -0.13 -2.50 4.97 -26.62 -0.13 -2.63 16
29 H 0.06 0.90 6.46 -51.93 -0.34 0.56 16
30 H 0.07 1.06 6.46 -51.93 -0.34 0.72 16
31 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16
32 H 0.40 4.05 6.85 -40.82 -0.28 3.77 16
33 H 0.12 1.17 7.32 -51.93 -0.38 0.79 16
34 H 0.11 0.65 7.86 -51.93 -0.41 0.24 16
35 H 0.08 0.40 7.86 -51.93 -0.41 -0.01 16
36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16
37 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16
38 H 0.10 0.19 8.14 -51.93 -0.42 -0.23 16
39 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16
40 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16
41 H 0.41 3.17 8.88 -40.82 -0.36 2.81 16
42 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16
43 H 0.06 1.12 6.51 -51.93 -0.34 0.78 16
44 H 0.04 0.58 6.46 -51.93 -0.34 0.24 16
45 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16
46 H 0.05 1.05 7.93 -51.93 -0.41 0.64 16
47 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16
48 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16
49 H 0.09 2.31 6.07 -51.93 -0.31 1.99 16
50 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16
51 H 0.06 1.17 6.51 -51.92 -0.34 0.83 16
LS Contribution 392.18 15.07 5.91 5.91
Total: -1.00 -36.36 392.18 -9.93 -46.29
By element:
Atomic # 1 Polarization: 12.29 SS G_CDS: -8.42 Total: 3.87 kcal
Atomic # 6 Polarization: 11.49 SS G_CDS: -1.62 Total: 9.87 kcal
Atomic # 7 Polarization: -62.51 SS G_CDS: -0.95 Total: -63.46 kcal
Atomic # 8 Polarization: -19.35 SS G_CDS: 0.18 Total: -19.18 kcal
Atomic # 14 Polarization: 21.73 SS G_CDS: -5.03 Total: 16.70 kcal
Total LS contribution 5.91 Total: 5.91 kcal
Total: -36.36 -9.93 -46.29 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001701013449.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 3.634 kcal
(2) G-P(sol) polarization free energy of solvation -36.359 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.725 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.928 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.287 kcal
(6) G-S(sol) free energy of system = (1) + (5) -42.653 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.19 seconds