Wall clock time and date at job start Tue Mar 31 2020 22:04:44
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.09001 * 109.47259 * 2 1
4 4 N 1.46503 * 109.47044 * 240.00395 * 2 1 3
5 5 C 1.34776 * 120.00199 * 84.99871 * 4 2 1
6 6 O 1.21281 * 119.99999 * 0.02562 * 5 4 2
7 7 C 1.50703 * 120.00004 * 179.97438 * 5 4 2
8 8 N 1.46498 * 109.46890 * 180.02562 * 7 5 4
9 9 C 1.46386 * 119.32714 * 90.00499 * 8 7 5
10 10 C 1.53244 * 109.15144 * 150.91703 * 9 8 7
11 11 C 1.53240 * 108.56107 * 55.47937 * 10 9 8
12 12 N 1.46376 * 109.15454 * 304.51216 * 11 10 9
13 13 C 1.34137 * 121.33906 * 29.32692 * 12 11 10
14 14 O 1.21589 * 118.70016 * 179.14566 * 13 12 11
15 15 C 1.52997 * 109.47268 * 120.00301 * 2 1 3
16 16 C 1.53047 * 109.46045 * 60.02638 * 15 2 1
17 17 C 1.53190 * 109.31316 * 178.60219 * 16 15 2
18 18 N 1.46922 * 108.76586 * 54.65540 * 17 16 15
19 19 C 1.36938 * 120.63430 * 126.40377 * 18 17 16
20 20 H 1.07996 * 119.99617 * 331.83071 * 19 18 17
21 21 C 1.38808 * 120.00427 * 151.82207 * 19 18 17
22 22 N 1.31623 * 119.99673 * 343.08091 * 21 19 18
23 23 Si 1.86800 * 120.00175 * 163.07264 * 21 19 18
24 24 H 1.48499 * 109.46562 * 90.00444 * 23 21 19
25 25 H 1.48493 * 109.47340 * 210.00127 * 23 21 19
26 26 H 1.48495 * 109.47172 * 330.00963 * 23 21 19
27 27 C 1.46934 * 118.73868 * 306.38534 * 18 17 16
28 28 C 1.53033 * 109.46083 * 299.97229 * 15 2 1
29 29 H 1.09001 * 109.46737 * 179.97438 * 1 2 3
30 30 H 1.08993 * 109.46826 * 299.99560 * 1 2 3
31 31 H 1.09000 * 109.47060 * 59.99718 * 1 2 3
32 32 H 0.97003 * 119.99519 * 264.99938 * 4 2 1
33 33 H 1.09001 * 109.46934 * 60.00083 * 7 5 4
34 34 H 1.08998 * 109.47450 * 300.00293 * 7 5 4
35 35 H 1.08996 * 109.52661 * 31.01044 * 9 8 7
36 36 H 1.09003 * 109.52134 * 270.81606 * 9 8 7
37 37 H 1.08997 * 109.62193 * 295.75179 * 10 9 8
38 38 H 1.09002 * 109.77119 * 175.28960 * 10 9 8
39 39 H 1.09006 * 109.51978 * 184.61913 * 11 10 9
40 40 H 1.08994 * 109.58397 * 64.45763 * 11 10 9
41 41 H 0.97003 * 119.33622 * 209.04095 * 12 11 10
42 42 H 1.08996 * 109.46364 * 179.97438 * 15 2 1
43 43 H 1.08999 * 109.49490 * 298.56631 * 16 15 2
44 44 H 1.09000 * 109.49745 * 58.66309 * 16 15 2
45 45 H 1.09002 * 109.59744 * 294.86653 * 17 16 15
46 46 H 1.08997 * 109.70526 * 174.50391 * 17 16 15
47 47 H 0.97005 * 119.99220 * 179.97438 * 22 21 19
48 48 H 1.08996 * 109.58291 * 293.81952 * 27 18 17
49 49 H 1.09000 * 109.70031 * 173.46415 * 27 18 17
50 50 H 1.08997 * 109.50162 * 301.33929 * 28 15 2
51 51 H 1.09010 * 109.49742 * 61.40117 * 28 15 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 7 2.0183 -0.6905 -1.1962
5 6 2.1470 -0.0182 -2.3572
6 8 1.8590 1.1587 -2.4115
7 6 2.6499 -0.7284 -3.5876
8 7 2.6996 0.2131 -4.7088
9 6 3.9225 0.9821 -4.9457
10 6 4.0385 1.2938 -6.4416
11 6 2.7611 2.0111 -6.8909
12 7 1.6014 1.1863 -6.5485
13 6 1.6221 0.3565 -5.4948
14 8 0.6263 -0.2949 -5.2450
15 6 2.0400 -0.7213 1.2492
16 6 1.5303 -2.1644 1.2485
17 6 2.0714 -2.8934 2.4824
18 7 1.7086 -2.1261 3.6817
19 6 1.0455 -2.7252 4.7192
20 1 0.3979 -3.5687 4.5308
21 6 1.2057 -2.2486 6.0130
22 7 2.2202 -1.4618 6.3035
23 14 -0.0183 -2.7236 7.3417
24 1 0.4355 -3.9696 8.0101
25 1 -0.1114 -1.6306 8.3426
26 1 -1.3520 -2.9483 6.7286
27 6 2.0712 -0.7037 3.7468
28 6 1.5304 0.0006 2.4986
29 1 -0.3633 -1.0277 -0.0005
30 1 -0.3633 0.5137 0.8900
31 1 -0.3633 0.5139 -0.8900
32 1 2.2490 -1.6317 -1.1527
33 1 1.9777 -1.5507 -3.8326
34 1 3.6492 -1.1202 -3.3980
35 1 4.7867 0.3994 -4.6269
36 1 3.8819 1.9138 -4.3815
37 1 4.1532 0.3655 -7.0011
38 1 4.9009 1.9367 -6.6185
39 1 2.7913 2.1674 -7.9693
40 1 2.6856 2.9737 -6.3853
41 1 0.8001 1.2439 -7.0922
42 1 3.1300 -0.7216 1.2488
43 1 0.4406 -2.1653 1.2740
44 1 1.8741 -2.6712 0.3468
45 1 3.1564 -2.9727 2.4137
46 1 1.6352 -3.8906 2.5408
47 1 2.3319 -1.1285 7.2076
48 1 3.1561 -0.6044 3.7812
49 1 1.6346 -0.2537 4.6384
50 1 1.8741 1.0349 2.4868
51 1 0.4406 -0.0204 2.5118
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001701013449.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:04:44
Heat of formation + Delta-G solvation = -68.950334 kcal
Electronic energy + Delta-G solvation = -30392.279857 eV
Core-core repulsion = 26325.931917 eV
Total energy + Delta-G solvation = -4066.347940 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.211 amu
Computer time = 1.30 seconds
Orbital eigenvalues (eV)
-41.86014 -40.80154 -39.39440 -37.48067 -36.83644 -35.78492 -34.46000 -32.89881
-32.01212 -31.43992 -30.52203 -28.89740 -27.13771 -26.42309 -24.97250 -24.07354
-23.77448 -22.35320 -21.48222 -20.22385 -19.87201 -18.64835 -18.58596 -18.27944
-18.23804 -17.17302 -16.70193 -16.61531 -16.10310 -15.69665 -15.61527 -15.54387
-15.36766 -15.26351 -14.92970 -14.66674 -14.63686 -14.32686 -14.11756 -14.08132
-13.70136 -13.19472 -13.03552 -12.96466 -12.92041 -12.73654 -12.59827 -12.44786
-12.31510 -12.19164 -12.15040 -11.95578 -11.65038 -11.60025 -11.25147 -11.21136
-11.04220 -10.94958 -10.51382 -10.16519 -10.05689 -9.59968 -8.64253 -7.85744
-5.30208 1.45927 1.48103 1.55781 1.57346 1.66508 2.07399 2.38141
2.52281 2.90204 3.28820 3.71253 3.75357 3.79994 3.87889 3.89992
3.99303 4.07090 4.09510 4.32269 4.38865 4.41182 4.42529 4.50953
4.59647 4.62317 4.69205 4.74798 4.78931 4.80976 4.83643 4.93076
4.96143 5.04648 5.18049 5.21840 5.22734 5.29856 5.32964 5.33242
5.45591 5.55235 5.59417 5.60299 5.68866 5.82320 6.08881 6.41749
6.60620 6.77604 7.17562 7.29347 7.52048 7.90348 8.41118 9.20351
Molecular weight = 338.21amu
Principal moments of inertia in cm(-1)
A = 0.033743 B = 0.002057 C = 0.002037
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 829.595764 B =13606.924988 C =13742.297177
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.156 4.156
2 C 0.160 3.840
3 H 0.068 0.932
4 N -0.711 5.711
5 C 0.493 3.507
6 O -0.581 6.581
7 C 0.113 3.887
8 N -0.606 5.606
9 C 0.103 3.897
10 C -0.143 4.143
11 C 0.102 3.898
12 N -0.734 5.734
13 C 0.703 3.297
14 O -0.649 6.649
15 C -0.071 4.071
16 C -0.116 4.116
17 C 0.140 3.860
18 N -0.611 5.611
19 C -0.258 4.258
20 H 0.065 0.935
21 C -0.053 4.053
22 N -0.935 5.935
23 Si 0.964 3.036
24 H -0.284 1.284
25 H -0.294 1.294
26 H -0.272 1.272
27 C 0.179 3.821
28 C -0.123 4.123
29 H 0.065 0.935
30 H 0.065 0.935
31 H 0.037 0.963
32 H 0.413 0.587
33 H 0.113 0.887
34 H 0.153 0.847
35 H 0.110 0.890
36 H 0.054 0.946
37 H 0.081 0.919
38 H 0.128 0.872
39 H 0.113 0.887
40 H 0.063 0.937
41 H 0.416 0.584
42 H 0.071 0.929
43 H 0.058 0.942
44 H 0.086 0.914
45 H 0.017 0.983
46 H 0.053 0.947
47 H 0.249 0.751
48 H -0.004 1.004
49 H 0.050 0.950
50 H 0.061 0.939
51 H 0.056 0.944
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.192 4.771 -29.177 30.426
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.214 4.214
2 C 0.055 3.945
3 H 0.086 0.914
4 N -0.364 5.364
5 C 0.279 3.721
6 O -0.461 6.461
7 C -0.015 4.015
8 N -0.341 5.341
9 C -0.018 4.018
10 C -0.181 4.181
11 C -0.022 4.022
12 N -0.390 5.390
13 C 0.403 3.597
14 O -0.532 6.532
15 C -0.090 4.090
16 C -0.155 4.155
17 C 0.015 3.985
18 N -0.334 5.334
19 C -0.389 4.389
20 H 0.083 0.917
21 C -0.248 4.248
22 N -0.582 5.582
23 Si 0.792 3.208
24 H -0.211 1.211
25 H -0.220 1.220
26 H -0.197 1.197
27 C 0.053 3.947
28 C -0.163 4.163
29 H 0.084 0.916
30 H 0.084 0.916
31 H 0.056 0.944
32 H 0.251 0.749
33 H 0.131 0.869
34 H 0.171 0.829
35 H 0.128 0.872
36 H 0.072 0.928
37 H 0.100 0.900
38 H 0.146 0.854
39 H 0.131 0.869
40 H 0.081 0.919
41 H 0.254 0.746
42 H 0.089 0.911
43 H 0.077 0.923
44 H 0.105 0.895
45 H 0.034 0.966
46 H 0.071 0.929
47 H 0.058 0.942
48 H 0.014 0.986
49 H 0.068 0.932
50 H 0.080 0.920
51 H 0.075 0.925
Dipole moment (debyes) X Y Z Total
from point charges 6.720 5.331 -28.864 30.112
hybrid contribution -0.911 -0.258 1.283 1.595
sum 5.809 5.073 -27.581 28.639
Atomic orbital electron populations
1.22148 0.95748 1.02398 1.01081 1.20748 0.93754 0.96167 0.83807
0.91412 1.46061 1.66681 1.14743 1.08958 1.21848 0.77048 0.87447
0.85728 1.90660 1.51680 1.18264 1.85467 1.21388 1.06033 0.91663
0.82382 1.46452 1.13796 1.44840 1.29030 1.21907 0.85996 0.96268
0.97676 1.22217 0.98940 1.02942 0.94008 1.21827 0.84167 0.93281
1.02879 1.44967 1.19583 1.44399 1.30091 1.15737 0.82779 0.80616
0.80533 1.90911 1.34852 1.52265 1.75172 1.21138 0.99994 0.95442
0.92424 1.21985 1.00744 0.94761 0.98038 1.21074 0.96341 0.94473
0.86630 1.44313 1.66963 1.05840 1.16309 1.19490 1.18836 1.14056
0.86503 0.91693 1.25774 0.98753 1.01140 0.99166 1.70184 1.29613
1.39098 1.19263 0.85335 0.79471 0.76978 0.79029 1.21106 1.22040
1.19697 1.20541 0.94865 0.83888 0.95415 1.22060 1.00534 0.98414
0.95250 0.91559 0.91614 0.94414 0.74874 0.86890 0.82910 0.87172
0.92773 0.89999 0.85382 0.86870 0.91910 0.74642 0.91050 0.92318
0.89539 0.96553 0.92850 0.94225 0.98627 0.93177 0.92017 0.92526
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -4.55 8.78 71.98 0.63 -3.92 16
2 C 0.16 4.44 2.40 44.99 0.11 4.55 16
3 H 0.07 2.12 7.58 -2.39 -0.02 2.10 16
4 N -0.71 -16.07 5.00 -442.53 -2.21 -18.28 16
5 C 0.49 12.48 7.86 87.66 0.69 13.17 16
6 O -0.58 -20.07 16.09 -3.03 -0.05 -20.12 16
7 C 0.11 1.97 5.83 85.63 0.50 2.47 16
8 N -0.61 -11.60 2.30 -845.64 -1.95 -13.55 16
9 C 0.10 1.15 6.55 86.48 0.57 1.72 16
10 C -0.14 -0.77 6.20 30.76 0.19 -0.58 16
11 C 0.10 0.80 7.20 86.48 0.62 1.43 16
12 N -0.73 -12.20 5.58 -479.86 -2.68 -14.88 16
13 C 0.70 17.39 8.18 179.45 1.47 18.86 16
14 O -0.65 -22.11 16.50 -4.00 -0.07 -22.18 16
15 C -0.07 -2.13 2.14 -10.77 -0.02 -2.15 16
16 C -0.12 -3.46 4.81 30.67 0.15 -3.32 16
17 C 0.14 5.47 6.52 86.36 0.56 6.03 16
18 N -0.61 -30.23 2.99 -699.11 -2.09 -32.32 16
19 C -0.26 -14.21 9.58 84.03 0.81 -13.40 16
20 H 0.07 3.48 7.88 -2.91 -0.02 3.46 16
21 C -0.05 -2.99 4.92 84.86 0.42 -2.58 16
22 N -0.94 -55.71 11.19 21.65 0.24 -55.47 16
23 Si 0.96 45.30 29.59 68.60 2.03 47.33 16
24 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16
25 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16
26 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16
27 C 0.18 8.58 5.30 86.36 0.46 9.04 16
28 C -0.12 -4.55 4.97 30.67 0.15 -4.40 16
29 H 0.07 1.85 6.46 -2.39 -0.02 1.84 16
30 H 0.06 1.96 6.46 -2.39 -0.02 1.94 16
31 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16
32 H 0.41 6.91 6.85 -92.71 -0.63 6.28 16
33 H 0.11 2.10 7.32 -2.39 -0.02 2.09 16
34 H 0.15 1.21 7.86 -2.39 -0.02 1.20 16
35 H 0.11 0.63 7.86 -2.39 -0.02 0.61 16
36 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16
37 H 0.08 0.43 8.14 -2.39 -0.02 0.42 16
38 H 0.13 -0.05 8.14 -2.39 -0.02 -0.07 16
39 H 0.11 0.23 8.14 -2.38 -0.02 0.21 16
40 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16
41 H 0.42 6.20 8.88 -92.71 -0.82 5.37 16
42 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16
43 H 0.06 1.87 6.51 -2.39 -0.02 1.86 16
44 H 0.09 1.88 6.46 -2.39 -0.02 1.87 16
45 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16
46 H 0.05 2.05 7.93 -2.39 -0.02 2.03 16
47 H 0.25 14.38 8.31 -92.70 -0.77 13.61 16
48 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16
49 H 0.05 2.76 6.07 -2.39 -0.01 2.75 16
50 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16
51 H 0.06 2.15 6.51 -2.38 -0.02 2.14 16
Total: -1.00 -82.98 392.18 0.01 -82.97
By element:
Atomic # 1 Polarization: 20.09 SS G_CDS: -0.51 Total: 19.58 kcal
Atomic # 6 Polarization: 19.63 SS G_CDS: 7.30 Total: 26.93 kcal
Atomic # 7 Polarization: -125.81 SS G_CDS: -8.69 Total: -134.50 kcal
Atomic # 8 Polarization: -42.19 SS G_CDS: -0.11 Total: -42.30 kcal
Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal
Total: -82.98 0.01 -82.97 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001701013449.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 14.018 kcal
(2) G-P(sol) polarization free energy of solvation -82.980 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.962 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.012 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.969 kcal
(6) G-S(sol) free energy of system = (1) + (5) -68.950 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.30 seconds