Wall clock time and date at job start Tue Mar 31 2020 22:44:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.09002 * 109.46884 * 2 1
4 4 C 1.50701 * 109.47038 * 119.99812 * 2 1 3
5 5 O 1.21278 * 119.99504 * 120.00212 * 4 2 1
6 6 N 1.34769 * 120.00045 * 299.99879 * 4 2 1
7 7 C 1.46505 * 120.00018 * 179.97438 * 6 4 2
8 8 C 1.52993 * 109.47243 * 180.02562 * 7 6 4
9 9 N 1.46901 * 109.47129 * 180.02562 * 8 7 6
10 10 C 1.46893 * 111.00122 * 294.30488 * 9 8 7
11 11 C 1.53241 * 109.34138 * 172.74585 * 10 9 8
12 12 N 1.47082 * 108.51810 * 53.82781 * 11 10 9
13 13 C 1.36941 * 120.87998 * 128.84356 * 12 11 10
14 14 H 1.08001 * 119.99548 * 333.48861 * 13 12 11
15 15 C 1.38809 * 120.00215 * 153.49436 * 13 12 11
16 16 N 1.31614 * 120.00102 * 159.48365 * 15 13 12
17 17 Si 1.86798 * 119.99837 * 339.48400 * 15 13 12
18 18 H 1.48501 * 109.46952 * 91.94346 * 17 15 13
19 19 H 1.48496 * 109.47102 * 211.93941 * 17 15 13
20 20 H 1.48497 * 109.47267 * 331.94161 * 17 15 13
21 21 C 1.47074 * 118.23924 * 308.81168 * 12 11 10
22 22 C 1.46897 * 110.99947 * 169.99796 * 9 8 7
23 23 C 1.52998 * 109.46779 * 240.00344 * 2 1 3
24 24 H 1.09004 * 110.21439 * 300.46980 * 23 2 1
25 25 C 1.54469 * 110.25180 * 62.49683 * 23 2 1
26 26 C 1.54629 * 101.76791 * 144.41629 * 25 23 2
27 27 C 1.51286 * 104.19254 * 335.20225 * 26 25 23
28 28 O 1.21288 * 124.93989 * 196.23122 * 27 26 25
29 29 N 1.34416 * 110.11396 * 16.25334 * 27 26 25
30 30 H 1.09000 * 109.47613 * 180.02562 * 1 2 3
31 31 H 1.09002 * 109.47162 * 300.00470 * 1 2 3
32 32 H 1.08998 * 109.47155 * 59.99940 * 1 2 3
33 33 H 0.97002 * 120.00227 * 0.02562 * 6 4 2
34 34 H 1.09001 * 109.46530 * 60.00220 * 7 6 4
35 35 H 1.09002 * 109.47301 * 300.00589 * 7 6 4
36 36 H 1.09002 * 109.47364 * 300.00441 * 8 7 6
37 37 H 1.08998 * 109.47148 * 60.00055 * 8 7 6
38 38 H 1.09002 * 109.49225 * 292.70732 * 10 9 8
39 39 H 1.08994 * 109.49606 * 52.78279 * 10 9 8
40 40 H 1.08997 * 109.62870 * 294.11906 * 11 10 9
41 41 H 1.09000 * 109.62941 * 173.53546 * 11 10 9
42 42 H 0.97002 * 120.00418 * 180.02562 * 16 15 13
43 43 H 1.09000 * 109.63278 * 291.48219 * 21 12 11
44 44 H 1.09006 * 109.62839 * 170.89573 * 21 12 11
45 45 H 1.09000 * 109.49973 * 307.21689 * 22 9 8
46 46 H 1.09002 * 109.49221 * 67.27342 * 22 9 8
47 47 H 1.08997 * 110.97362 * 262.53549 * 25 23 2
48 48 H 1.09004 * 110.97097 * 26.29631 * 25 23 2
49 49 H 1.09006 * 110.48859 * 216.52940 * 26 25 23
50 50 H 1.08994 * 110.59987 * 93.93795 * 26 25 23
51 51 H 0.97006 * 124.34436 * 180.38450 * 29 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0323 -0.7104 1.2305
5 8 2.7296 -1.6964 1.1192
6 7 1.7068 -0.2499 2.4545
7 6 2.1946 -0.9408 3.6508
8 6 1.6843 -0.2199 4.8999
9 7 2.1740 -0.9123 6.0994
10 6 1.5955 -2.2586 6.2031
11 6 2.2644 -3.0108 7.3585
12 7 2.1550 -2.1913 8.5750
13 6 1.6630 -2.7216 9.7378
14 1 0.9758 -3.5540 9.7032
15 6 2.0474 -2.1892 10.9607
16 7 1.3084 -2.3960 12.0300
17 14 3.6135 -1.1790 11.0887
18 1 3.2933 0.2576 10.8914
19 1 4.2183 -1.3715 12.4312
20 1 4.5737 -1.6201 10.0454
21 6 2.5886 -0.7875 8.5097
22 6 1.9069 -0.1228 7.3090
23 6 2.0399 -0.7212 -1.2493
24 1 1.6764 -1.7487 -1.2658
25 6 1.5871 0.0285 -2.5217
26 6 2.8018 -0.1749 -3.4567
27 6 3.9622 -0.4024 -2.5130
28 8 5.1330 -0.3266 -2.8208
29 7 3.5070 -0.7010 -1.2841
30 1 -0.3634 -1.0276 0.0005
31 1 -0.3633 0.5139 0.8900
32 1 -0.3633 0.5138 -0.8900
33 1 1.1488 0.5386 2.5435
34 1 3.2846 -0.9412 3.6508
35 1 1.8310 -1.9684 3.6506
36 1 2.0476 0.8078 4.9003
37 1 0.5943 -0.2198 4.8996
38 1 0.5246 -2.1807 6.3914
39 1 1.7630 -2.7992 5.2717
40 1 3.3154 -3.1808 7.1249
41 1 1.7618 -3.9654 7.5137
42 1 1.5768 -2.0237 12.8845
43 1 3.6708 -0.7438 8.3867
44 1 2.3003 -0.2722 9.4260
45 1 2.3002 0.8855 7.1796
46 1 0.8317 -0.0743 7.4816
47 1 0.6901 -0.4250 -2.9433
48 1 1.4270 1.0867 -2.3148
49 1 2.9711 0.7159 -4.0616
50 1 2.6528 -1.0458 -4.0950
51 1 4.0752 -0.8804 -0.5186
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001713078116.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:44:59
Heat of formation + Delta-G solvation = -70.624201 kcal
Electronic energy + Delta-G solvation = -29565.070954 eV
Core-core repulsion = 25498.650429 eV
Total energy + Delta-G solvation = -4066.420524 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.211 amu
Computer time = 1.23 seconds
Orbital eigenvalues (eV)
-41.76696 -40.54907 -39.89083 -37.82639 -36.93293 -35.50041 -34.21727 -33.53314
-32.12500 -32.06288 -30.43046 -27.89420 -27.46810 -25.46972 -25.06483 -24.13504
-22.92681 -22.27061 -21.41902 -21.18131 -20.87552 -18.85382 -18.43688 -18.14747
-17.48328 -17.18274 -17.04608 -16.72386 -16.17641 -15.94245 -15.89235 -15.69559
-15.53936 -15.19854 -14.86297 -14.72949 -14.54088 -14.40610 -14.29113 -13.89741
-13.83400 -13.60934 -13.46123 -13.17922 -13.03480 -12.84810 -12.60731 -12.54187
-12.36774 -12.22271 -12.11026 -12.09708 -11.86748 -11.78928 -11.66139 -11.45717
-10.93720 -10.81213 -10.72575 -10.13932 -10.07344 -9.42153 -8.92660 -8.18646
-5.50374 1.27481 1.41172 1.50436 1.56710 1.61667 2.03503 2.39450
2.43633 2.94882 3.07084 3.33138 3.38844 3.48051 3.72024 3.81283
3.88982 4.04172 4.13691 4.17977 4.20217 4.27002 4.33525 4.37639
4.41108 4.43381 4.49128 4.56868 4.68197 4.73874 4.77939 4.87845
4.88741 4.92875 4.94811 4.99333 5.01843 5.05202 5.11108 5.24816
5.25870 5.36147 5.41356 5.80326 5.83900 6.03032 6.05881 6.09337
6.16562 6.52832 6.87387 7.19915 7.25323 7.58616 8.01033 9.01113
Molecular weight = 338.21amu
Principal moments of inertia in cm(-1)
A = 0.028328 B = 0.001864 C = 0.001822
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 988.194600 B =15016.778655 C =15360.264880
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.141 4.141
2 C -0.109 4.109
3 H 0.124 0.876
4 C 0.509 3.491
5 O -0.583 6.583
6 N -0.713 5.713
7 C 0.130 3.870
8 C 0.053 3.947
9 N -0.541 5.541
10 C 0.051 3.949
11 C 0.144 3.856
12 N -0.623 5.623
13 C -0.249 4.249
14 H 0.053 0.947
15 C -0.036 4.036
16 N -0.956 5.956
17 Si 0.949 3.051
18 H -0.268 1.268
19 H -0.311 1.311
20 H -0.268 1.268
21 C 0.122 3.878
22 C 0.057 3.943
23 C 0.142 3.858
24 H 0.081 0.919
25 C -0.113 4.113
26 C -0.150 4.150
27 C 0.500 3.500
28 O -0.601 6.601
29 N -0.721 5.721
30 H 0.057 0.943
31 H 0.077 0.923
32 H 0.101 0.899
33 H 0.417 0.583
34 H 0.058 0.942
35 H 0.057 0.943
36 H 0.097 0.903
37 H 0.050 0.950
38 H 0.027 0.973
39 H 0.093 0.907
40 H 0.032 0.968
41 H 0.060 0.940
42 H 0.262 0.738
43 H 0.032 0.968
44 H 0.056 0.944
45 H 0.099 0.901
46 H 0.030 0.970
47 H 0.124 0.876
48 H 0.107 0.893
49 H 0.115 0.885
50 H 0.117 0.883
51 H 0.403 0.597
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.798 11.845 -32.428 35.187
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.199 4.199
2 C -0.131 4.131
3 H 0.142 0.858
4 C 0.296 3.704
5 O -0.463 6.463
6 N -0.365 5.365
7 C 0.005 3.995
8 C -0.075 4.075
9 N -0.267 5.267
10 C -0.078 4.078
11 C 0.019 3.981
12 N -0.349 5.349
13 C -0.379 4.379
14 H 0.070 0.930
15 C -0.230 4.230
16 N -0.602 5.602
17 Si 0.778 3.222
18 H -0.194 1.194
19 H -0.240 1.240
20 H -0.193 1.193
21 C -0.003 4.003
22 C -0.073 4.073
23 C 0.037 3.963
24 H 0.099 0.901
25 C -0.151 4.151
26 C -0.189 4.189
27 C 0.288 3.712
28 O -0.483 6.483
29 N -0.374 5.374
30 H 0.077 0.923
31 H 0.096 0.904
32 H 0.120 0.880
33 H 0.254 0.746
34 H 0.076 0.924
35 H 0.075 0.925
36 H 0.115 0.885
37 H 0.068 0.932
38 H 0.046 0.954
39 H 0.111 0.889
40 H 0.050 0.950
41 H 0.078 0.922
42 H 0.071 0.929
43 H 0.050 0.950
44 H 0.074 0.926
45 H 0.117 0.883
46 H 0.048 0.952
47 H 0.143 0.857
48 H 0.126 0.874
49 H 0.133 0.867
50 H 0.135 0.865
51 H 0.242 0.758
Dipole moment (debyes) X Y Z Total
from point charges -5.320 11.157 -32.621 34.884
hybrid contribution 0.238 0.077 1.718 1.736
sum -5.083 11.235 -30.903 33.273
Atomic orbital electron populations
1.21825 0.89205 1.03562 1.05330 1.21766 1.00064 1.01300 0.89989
0.85831 1.21303 0.79338 0.84102 0.85637 1.90720 1.39841 1.28390
1.87323 1.45805 1.53477 1.32357 1.04891 1.21099 0.99091 0.95912
0.83361 1.22202 0.98380 0.98706 0.88241 1.61747 1.59574 1.02909
1.02424 1.22517 0.96052 0.90137 0.99062 1.21177 0.98143 0.93604
0.85158 1.44562 1.75150 1.06972 1.08186 1.18872 1.19465 1.15626
0.83922 0.92969 1.25882 1.01009 1.01252 0.94895 1.69955 1.39162
1.50293 1.00818 0.85899 0.81823 0.79039 0.75479 1.19428 1.23999
1.19312 1.21486 0.96898 0.84802 0.97108 1.22432 0.98304 0.97138
0.89384 1.21748 0.78523 1.00493 0.95537 0.90091 1.22823 0.98095
1.02921 0.91239 1.22413 0.92364 1.06219 0.97945 1.21849 0.90099
0.74335 0.84912 1.90720 1.21763 1.55276 1.80551 1.46670 1.09394
1.69579 1.11754 0.92339 0.90439 0.87990 0.74618 0.92373 0.92506
0.88452 0.93220 0.95433 0.88865 0.94991 0.92167 0.92898 0.94970
0.92618 0.88288 0.95163 0.85745 0.87449 0.86720 0.86525 0.75843
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -0.11 8.89 71.98 0.64 0.53 16
2 C -0.11 -0.68 2.38 -11.54 -0.03 -0.71 16
3 H 0.12 0.38 8.13 -2.39 -0.02 0.37 16
4 C 0.51 7.71 6.93 87.66 0.61 8.32 16
5 O -0.58 -14.45 14.53 -3.02 -0.04 -14.49 16
6 N -0.71 -8.87 5.45 -463.07 -2.52 -11.39 16
7 C 0.13 2.44 5.60 86.38 0.48 2.93 16
8 C 0.05 0.98 5.08 86.30 0.44 1.41 16
9 N -0.54 -15.17 4.63 -895.28 -4.14 -19.32 16
10 C 0.05 1.57 5.46 86.39 0.47 2.04 16
11 C 0.14 5.66 6.69 86.35 0.58 6.24 16
12 N -0.62 -29.63 2.82 -698.12 -1.97 -31.60 16
13 C -0.25 -14.26 10.08 84.03 0.85 -13.41 16
14 H 0.05 3.26 8.05 -2.91 -0.02 3.23 16
15 C -0.04 -2.09 5.24 84.86 0.44 -1.65 16
16 N -0.96 -60.12 13.97 21.65 0.30 -59.81 16
17 Si 0.95 46.89 24.30 68.60 1.67 48.56 16
18 H -0.27 -12.21 6.58 99.48 0.65 -11.56 16
19 H -0.31 -15.65 7.11 99.48 0.71 -14.94 16
20 H -0.27 -13.03 6.61 99.48 0.66 -12.38 16
21 C 0.12 5.12 4.35 86.35 0.38 5.50 16
22 C 0.06 1.79 5.62 86.39 0.49 2.27 16
23 C 0.14 1.26 2.56 45.44 0.12 1.37 16
24 H 0.08 0.88 8.12 -2.39 -0.02 0.86 16
25 C -0.11 -0.18 5.62 31.65 0.18 0.00 16
26 C -0.15 -1.16 6.86 30.59 0.21 -0.95 16
27 C 0.50 9.91 8.43 87.90 0.74 10.65 16
28 O -0.60 -18.57 18.03 -3.05 -0.06 -18.63 16
29 N -0.72 -12.47 5.55 -439.45 -2.44 -14.91 16
30 H 0.06 0.20 8.14 -2.39 -0.02 0.18 16
31 H 0.08 -0.05 7.56 -2.39 -0.02 -0.07 16
32 H 0.10 -0.40 7.32 -2.39 -0.02 -0.42 16
33 H 0.42 2.34 7.89 -92.71 -0.73 1.61 16
34 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16
35 H 0.06 1.25 6.40 -2.39 -0.02 1.23 16
36 H 0.10 1.45 7.97 -2.39 -0.02 1.43 16
37 H 0.05 0.84 8.12 -2.39 -0.02 0.82 16
38 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16
39 H 0.09 2.43 6.16 -2.39 -0.01 2.41 16
40 H 0.03 1.25 8.14 -2.39 -0.02 1.24 16
41 H 0.06 2.37 7.95 -2.39 -0.02 2.35 16
42 H 0.26 15.64 8.31 -92.71 -0.77 14.86 16
43 H 0.03 1.37 6.94 -2.39 -0.02 1.35 16
44 H 0.06 2.55 4.60 -2.38 -0.01 2.53 16
45 H 0.10 2.50 7.99 -2.39 -0.02 2.48 16
46 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16
47 H 0.12 -0.45 8.14 -2.39 -0.02 -0.47 16
48 H 0.11 -0.21 7.88 -2.38 -0.02 -0.23 16
49 H 0.11 0.64 8.14 -2.38 -0.02 0.62 16
50 H 0.12 0.66 8.14 -2.39 -0.02 0.64 16
51 H 0.40 8.89 7.43 -92.70 -0.69 8.20 16
Total: -1.00 -84.36 391.35 -3.19 -87.55
By element:
Atomic # 1 Polarization: 10.11 SS G_CDS: -0.58 Total: 9.53 kcal
Atomic # 6 Polarization: 17.93 SS G_CDS: 6.59 Total: 24.52 kcal
Atomic # 7 Polarization: -126.27 SS G_CDS: -10.77 Total: -137.04 kcal
Atomic # 8 Polarization: -33.02 SS G_CDS: -0.10 Total: -33.12 kcal
Atomic # 14 Polarization: 46.89 SS G_CDS: 1.67 Total: 48.56 kcal
Total: -84.36 -3.19 -87.55 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001713078116.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 16.924 kcal
(2) G-P(sol) polarization free energy of solvation -84.356 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.432 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.192 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.548 kcal
(6) G-S(sol) free energy of system = (1) + (5) -70.624 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.23 seconds