Wall clock time and date at job start Tue Mar 31 2020 21:52:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 110.35184 * 2 1 4 4 C 1.54591 * 110.30850 * 122.14307 * 2 1 3 5 5 C 1.54938 * 102.92225 * 140.87484 * 4 2 1 6 6 N 1.48532 * 103.22345 * 322.58066 * 5 4 2 7 7 C 1.46906 * 110.99871 * 159.72354 * 6 5 4 8 8 C 1.50692 * 109.47078 * 52.60508 * 7 6 5 9 9 O 1.21287 * 120.00244 * 359.97438 * 8 7 6 10 10 N 1.34779 * 120.00037 * 180.02562 * 8 7 6 11 11 C 1.46504 * 120.00076 * 180.02562 * 10 8 7 12 12 H 1.08998 * 112.85110 * 336.19336 * 11 10 8 13 13 C 1.53958 * 113.61361 * 107.46514 * 11 10 8 14 14 C 1.53776 * 87.01950 * 89.20011 * 13 11 10 15 15 H 1.09004 * 113.61271 * 270.76839 * 14 13 11 16 16 N 1.46901 * 113.61653 * 139.95123 * 14 13 11 17 17 C 1.46904 * 110.99695 * 105.85998 * 16 14 13 18 18 C 1.50706 * 109.46676 * 180.02562 * 17 16 14 19 19 O 1.21288 * 120.00284 * 0.02562 * 18 17 16 20 20 N 1.34777 * 119.99730 * 179.97438 * 18 17 16 21 21 C 1.37095 * 119.99910 * 179.97438 * 20 18 17 22 22 H 1.08005 * 119.99959 * 0.02562 * 21 20 18 23 23 C 1.38950 * 120.00053 * 180.02562 * 21 20 18 24 24 N 1.31413 * 119.99930 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99918 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47057 * 179.97438 * 25 23 21 27 27 H 1.48500 * 109.47389 * 300.00155 * 25 23 21 28 28 H 1.48504 * 109.47102 * 60.00503 * 25 23 21 29 29 C 1.53776 * 87.17596 * 25.35701 * 14 13 11 30 30 C 1.47900 * 105.82372 * 39.21093 * 6 5 4 31 31 H 1.08999 * 109.47396 * 182.14445 * 1 2 3 32 32 H 1.09001 * 109.46982 * 302.14569 * 1 2 3 33 33 H 1.08996 * 109.47092 * 62.14026 * 1 2 3 34 34 H 1.09009 * 110.72202 * 259.22778 * 4 2 1 35 35 H 1.08998 * 110.72932 * 22.33417 * 4 2 1 36 36 H 1.09001 * 110.66700 * 204.15112 * 5 4 2 37 37 H 1.08997 * 110.66919 * 81.01733 * 5 4 2 38 38 H 1.09001 * 109.47048 * 292.60601 * 7 6 5 39 39 H 1.08997 * 109.47161 * 172.60714 * 7 6 5 40 40 H 0.97000 * 119.99961 * 359.97438 * 10 8 7 41 41 H 1.09000 * 113.66653 * 334.66817 * 13 11 10 42 42 H 1.09007 * 113.61205 * 203.72084 * 13 11 10 43 43 H 1.00902 * 110.99893 * 341.91308 * 16 14 13 44 44 H 1.08996 * 109.47230 * 60.00720 * 17 16 14 45 45 H 1.09002 * 109.47146 * 299.99952 * 17 16 14 46 46 H 0.96996 * 119.99887 * 0.02562 * 20 18 17 47 47 H 0.97001 * 119.99781 * 359.97438 * 24 23 21 48 48 H 1.09004 * 113.60889 * 89.15517 * 29 14 13 49 49 H 1.08995 * 113.62129 * 220.05969 * 29 14 13 50 50 H 1.08997 * 109.91698 * 94.01689 * 30 6 5 51 51 H 1.09000 * 109.92113 * 215.31573 * 30 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9091 1.0220 0.0000 4 6 2.0665 -0.7714 1.2276 5 6 3.2855 -1.5348 0.6515 6 7 2.8312 -1.9236 -0.7082 7 6 3.9750 -2.2263 -1.5789 8 6 4.8662 -3.2370 -0.9043 9 8 4.5773 -3.6629 0.1940 10 7 5.9849 -3.6669 -1.5208 11 6 6.8511 -4.6499 -0.8652 12 1 6.7448 -4.6509 0.2196 13 6 6.7782 -6.0531 -1.4946 14 6 7.9109 -5.6035 -2.4325 15 1 7.5573 -5.1338 -3.3503 16 7 8.9208 -6.6423 -2.6757 17 6 8.7806 -7.2071 -4.0246 18 6 9.8306 -8.2671 -4.2368 19 8 10.6178 -8.5269 -3.3513 20 7 9.8942 -8.9272 -5.4101 21 6 10.8496 -9.8912 -5.6033 22 1 11.5511 -10.1220 -4.8152 23 6 10.9155 -10.5714 -6.8132 24 7 10.0623 -10.2903 -7.7723 25 14 12.2170 -11.8854 -7.0762 26 1 12.0750 -12.4568 -8.4395 27 1 13.5661 -11.2823 -6.9297 28 1 12.0440 -12.9622 -6.0683 29 6 8.3125 -4.5975 -1.3410 30 6 2.0644 -0.7684 -1.2229 31 1 -0.3634 -1.0269 0.0385 32 1 -0.3633 0.5468 0.8701 33 1 -0.3633 0.4802 -0.9085 34 1 2.3791 -0.0805 2.0108 35 1 1.3161 -1.4660 1.6050 36 1 3.5046 -2.4182 1.2511 37 1 4.1563 -0.8818 0.5940 38 1 4.5394 -1.3132 -1.7680 39 1 3.6148 -2.6330 -2.5238 40 1 6.2162 -3.3260 -2.3990 41 1 5.8386 -6.2534 -2.0095 42 1 7.0673 -6.8530 -0.8129 43 1 8.8717 -7.3656 -1.9739 44 1 8.9072 -6.4167 -4.7644 45 1 7.7905 -7.6502 -4.1319 46 1 9.2644 -8.7197 -6.1180 47 1 9.3863 -9.6082 -7.6356 48 1 9.0219 -4.9987 -0.6171 49 1 8.6098 -3.6245 -1.7319 50 1 2.7161 -0.1227 -1.8114 51 1 1.2326 -1.1177 -1.8346 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713168417.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:14 Heat of formation + Delta-G solvation = -40.376287 kcal Electronic energy + Delta-G solvation = -28479.383024 eV Core-core repulsion = 24414.274147 eV Total energy + Delta-G solvation = -4065.108876 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.74278 -39.60295 -38.50811 -37.98902 -34.78588 -34.11015 -33.80087 -32.51229 -31.05238 -30.13806 -28.12318 -26.74331 -25.85506 -25.35686 -24.16491 -22.95690 -21.93972 -20.94513 -20.50400 -19.91487 -19.43797 -17.92377 -17.56829 -16.78595 -16.46846 -16.04418 -15.93938 -15.54659 -15.34399 -15.02381 -14.48436 -14.42133 -14.29033 -14.01545 -13.79602 -13.67803 -13.62499 -13.29517 -13.06920 -12.90084 -12.62648 -12.42982 -12.35231 -12.05072 -11.92470 -11.77139 -11.59355 -11.30047 -11.22267 -11.15997 -11.00371 -10.96953 -10.86987 -10.53767 -10.20931 -9.90951 -9.87355 -9.55621 -9.32339 -8.81761 -8.52402 -8.10799 -8.03311 -6.76351 -3.89490 2.29859 2.67504 3.30643 3.34677 3.54966 3.62542 3.83273 4.06929 4.15255 4.22296 4.29770 4.37199 4.41115 4.46293 4.51875 4.72743 4.77196 4.86595 4.87797 4.89845 5.02458 5.03696 5.09656 5.12080 5.24331 5.32458 5.39910 5.43722 5.52354 5.58427 5.63891 5.64682 5.65654 5.68202 5.71772 5.78762 5.85718 5.87592 5.90919 5.94488 6.02369 6.34126 6.46965 6.49250 7.13977 7.18229 7.56354 7.79932 7.93484 8.07178 8.59066 8.78864 9.46563 9.86631 10.67085 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.032102 B = 0.001479 C = 0.001435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.023585 B =18930.755234 C =19511.786799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.104 4.104 3 H 0.073 0.927 4 C -0.122 4.122 5 C 0.031 3.969 6 N -0.500 5.500 7 C 0.026 3.974 8 C 0.516 3.484 9 O -0.523 6.523 10 N -0.712 5.712 11 C 0.121 3.879 12 H 0.104 0.896 13 C -0.181 4.181 14 C 0.068 3.932 15 H 0.093 0.907 16 N -0.656 5.656 17 C 0.050 3.950 18 C 0.442 3.558 19 O -0.577 6.577 20 N -0.575 5.575 21 C -0.383 4.383 22 H 0.099 0.901 23 C -0.009 4.009 24 N -0.901 5.901 25 Si 1.091 2.909 26 H -0.279 1.279 27 H -0.284 1.284 28 H -0.284 1.284 29 C -0.132 4.132 30 C 0.037 3.963 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.069 0.931 35 H 0.076 0.924 36 H 0.113 0.887 37 H 0.036 0.964 38 H 0.065 0.935 39 H 0.106 0.894 40 H 0.401 0.599 41 H 0.069 0.931 42 H 0.093 0.907 43 H 0.353 0.647 44 H 0.084 0.916 45 H 0.043 0.957 46 H 0.375 0.625 47 H 0.261 0.739 48 H 0.101 0.899 49 H 0.073 0.927 50 H 0.044 0.956 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.677 22.624 12.082 31.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.123 4.123 3 H 0.091 0.909 4 C -0.160 4.160 5 C -0.096 4.096 6 N -0.225 5.225 7 C -0.106 4.106 8 C 0.302 3.698 9 O -0.398 6.398 10 N -0.364 5.364 11 C 0.015 3.985 12 H 0.122 0.878 13 C -0.221 4.221 14 C -0.043 4.043 15 H 0.111 0.889 16 N -0.288 5.288 17 C -0.082 4.082 18 C 0.228 3.772 19 O -0.460 6.460 20 N -0.214 5.214 21 C -0.512 4.512 22 H 0.117 0.883 23 C -0.211 4.211 24 N -0.540 5.540 25 Si 0.917 3.083 26 H -0.204 1.204 27 H -0.210 1.210 28 H -0.210 1.210 29 C -0.171 4.171 30 C -0.090 4.090 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.088 0.912 35 H 0.095 0.905 36 H 0.130 0.870 37 H 0.055 0.945 38 H 0.083 0.917 39 H 0.124 0.876 40 H 0.235 0.765 41 H 0.088 0.912 42 H 0.112 0.888 43 H 0.174 0.826 44 H 0.102 0.898 45 H 0.061 0.939 46 H 0.208 0.792 47 H 0.072 0.928 48 H 0.119 0.881 49 H 0.091 0.909 50 H 0.063 0.937 51 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -16.558 20.970 12.181 29.364 hybrid contribution -1.141 1.668 0.068 2.022 sum -17.698 22.638 12.249 31.237 Atomic orbital electron populations 1.21825 0.94226 1.02274 1.01573 1.22001 0.96603 0.98919 0.94823 0.90857 1.22637 0.97936 0.98666 0.96791 1.23531 0.95506 1.00201 0.90397 1.64693 1.19216 1.36325 1.02272 1.22243 0.92312 0.97904 0.98099 1.20477 0.80948 0.82378 0.86028 1.90653 1.71725 1.57345 1.20092 1.45687 1.24319 1.44467 1.21954 1.21779 0.90363 0.88197 0.98159 0.87835 1.24231 1.00388 0.97430 1.00093 1.23101 0.90186 0.94235 0.96809 0.88870 1.60016 1.48684 1.16559 1.03503 1.21706 0.97125 0.97385 0.92028 1.19759 0.88052 0.85393 0.84018 1.90528 1.43983 1.68427 1.43104 1.41938 1.31134 1.34921 1.13368 1.20543 1.11908 1.15292 1.03473 0.88323 1.26513 1.01994 1.01433 0.91208 1.70906 1.17390 1.31948 1.33772 0.83132 0.74102 0.74648 0.76392 1.20410 1.20978 1.21017 1.23456 0.94886 0.99768 0.98993 1.23057 0.98148 0.90821 0.97019 0.92062 0.92618 0.92690 0.91227 0.90509 0.86953 0.94537 0.91717 0.87584 0.76510 0.91199 0.88823 0.82621 0.89750 0.93902 0.79168 0.92799 0.88055 0.90880 0.93745 0.89912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.73 8.90 37.16 0.33 -0.40 16 2 C -0.10 -0.62 3.59 -89.26 -0.32 -0.94 16 3 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 4 C -0.12 -0.86 6.61 -24.87 -0.16 -1.02 16 5 C 0.03 0.27 5.30 -1.90 -0.01 0.26 16 6 N -0.50 -4.34 5.26 -231.89 -1.22 -5.56 16 7 C 0.03 0.19 5.52 -4.98 -0.03 0.16 16 8 C 0.52 4.96 7.54 -10.99 -0.08 4.88 16 9 O -0.52 -6.93 13.12 5.55 0.07 -6.86 16 10 N -0.71 -5.68 5.26 -52.93 -0.28 -5.96 16 11 C 0.12 1.14 4.33 -67.02 -0.29 0.85 16 12 H 0.10 1.12 7.46 -51.93 -0.39 0.73 16 13 C -0.18 -1.88 7.52 -25.83 -0.19 -2.08 16 14 C 0.07 0.75 4.04 -66.90 -0.27 0.48 16 15 H 0.09 0.93 7.88 -51.93 -0.41 0.52 16 16 N -0.66 -10.11 6.24 -107.13 -0.67 -10.78 16 17 C 0.05 0.86 6.02 -4.97 -0.03 0.83 16 18 C 0.44 10.40 7.82 -10.98 -0.09 10.31 16 19 O -0.58 -15.77 15.78 5.55 0.09 -15.69 16 20 N -0.58 -14.46 5.28 -10.96 -0.06 -14.52 16 21 C -0.38 -10.80 9.68 -14.93 -0.14 -10.94 16 22 H 0.10 2.95 7.16 -52.48 -0.38 2.57 16 23 C -0.01 -0.25 5.50 -17.47 -0.10 -0.34 16 24 N -0.90 -25.19 13.68 55.50 0.76 -24.44 16 25 Si 1.09 24.26 29.92 -169.99 -5.09 19.18 16 26 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 27 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 28 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 29 C -0.13 -1.27 7.63 -25.92 -0.20 -1.47 16 30 C 0.04 0.24 6.36 -2.75 -0.02 0.23 16 31 H 0.06 0.36 8.11 -51.93 -0.42 -0.06 16 32 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.05 0.25 8.14 -51.93 -0.42 -0.18 16 34 H 0.07 0.42 8.14 -51.92 -0.42 -0.01 16 35 H 0.08 0.58 7.84 -51.93 -0.41 0.17 16 36 H 0.11 1.28 5.97 -51.93 -0.31 0.97 16 37 H 0.04 0.32 8.02 -51.93 -0.42 -0.10 16 38 H 0.06 0.35 7.81 -51.93 -0.41 -0.05 16 39 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.40 2.23 8.70 -40.82 -0.36 1.87 16 41 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.09 1.01 7.83 -51.93 -0.41 0.60 16 43 H 0.35 5.71 7.91 -39.29 -0.31 5.40 16 44 H 0.08 1.31 8.13 -51.93 -0.42 0.89 16 45 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.38 8.67 6.73 -40.82 -0.27 8.40 16 47 H 0.26 7.00 6.78 -40.82 -0.28 6.72 16 48 H 0.10 1.05 8.14 -51.93 -0.42 0.62 16 49 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 50 H 0.04 0.25 7.57 -51.93 -0.39 -0.15 16 51 H 0.08 0.52 7.68 -51.93 -0.40 0.12 16 LS Contribution 407.06 15.07 6.13 6.13 Total: -1.00 -34.52 407.06 -10.43 -44.95 By element: Atomic # 1 Polarization: 21.29 SS G_CDS: -8.57 Total: 12.72 kcal Atomic # 6 Polarization: 2.41 SS G_CDS: -1.60 Total: 0.81 kcal Atomic # 7 Polarization: -59.78 SS G_CDS: -1.47 Total: -61.24 kcal Atomic # 8 Polarization: -22.70 SS G_CDS: 0.16 Total: -22.54 kcal Atomic # 14 Polarization: 24.26 SS G_CDS: -5.09 Total: 19.18 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -34.52 -10.43 -44.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713168417.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.574 kcal (2) G-P(sol) polarization free energy of solvation -34.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds