Wall clock time and date at job start Tue Mar 31 2020 21:52:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 110.35184 * 2 1 4 4 C 1.54591 * 110.30850 * 122.14307 * 2 1 3 5 5 C 1.54938 * 102.92225 * 140.87484 * 4 2 1 6 6 N 1.48532 * 103.22345 * 322.58066 * 5 4 2 7 7 C 1.46906 * 110.99871 * 159.72354 * 6 5 4 8 8 C 1.50692 * 109.47078 * 52.60508 * 7 6 5 9 9 O 1.21287 * 120.00244 * 359.97438 * 8 7 6 10 10 N 1.34779 * 120.00037 * 180.02562 * 8 7 6 11 11 C 1.46504 * 120.00076 * 180.02562 * 10 8 7 12 12 H 1.08998 * 112.85110 * 336.19336 * 11 10 8 13 13 C 1.53958 * 113.61361 * 107.46514 * 11 10 8 14 14 C 1.53776 * 87.01950 * 89.20011 * 13 11 10 15 15 H 1.09004 * 113.61271 * 270.76839 * 14 13 11 16 16 N 1.46901 * 113.61653 * 139.95123 * 14 13 11 17 17 C 1.46904 * 110.99695 * 105.85998 * 16 14 13 18 18 C 1.50706 * 109.46676 * 180.02562 * 17 16 14 19 19 O 1.21288 * 120.00284 * 0.02562 * 18 17 16 20 20 N 1.34777 * 119.99730 * 179.97438 * 18 17 16 21 21 C 1.37095 * 119.99910 * 179.97438 * 20 18 17 22 22 H 1.08005 * 119.99959 * 0.02562 * 21 20 18 23 23 C 1.38950 * 120.00053 * 180.02562 * 21 20 18 24 24 N 1.31413 * 119.99930 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99918 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47057 * 179.97438 * 25 23 21 27 27 H 1.48500 * 109.47389 * 300.00155 * 25 23 21 28 28 H 1.48504 * 109.47102 * 60.00503 * 25 23 21 29 29 C 1.53776 * 87.17596 * 25.35701 * 14 13 11 30 30 C 1.47900 * 105.82372 * 39.21093 * 6 5 4 31 31 H 1.08999 * 109.47396 * 182.14445 * 1 2 3 32 32 H 1.09001 * 109.46982 * 302.14569 * 1 2 3 33 33 H 1.08996 * 109.47092 * 62.14026 * 1 2 3 34 34 H 1.09009 * 110.72202 * 259.22778 * 4 2 1 35 35 H 1.08998 * 110.72932 * 22.33417 * 4 2 1 36 36 H 1.09001 * 110.66700 * 204.15112 * 5 4 2 37 37 H 1.08997 * 110.66919 * 81.01733 * 5 4 2 38 38 H 1.09001 * 109.47048 * 292.60601 * 7 6 5 39 39 H 1.08997 * 109.47161 * 172.60714 * 7 6 5 40 40 H 0.97000 * 119.99961 * 359.97438 * 10 8 7 41 41 H 1.09000 * 113.66653 * 334.66817 * 13 11 10 42 42 H 1.09007 * 113.61205 * 203.72084 * 13 11 10 43 43 H 1.00902 * 110.99893 * 341.91308 * 16 14 13 44 44 H 1.08996 * 109.47230 * 60.00720 * 17 16 14 45 45 H 1.09002 * 109.47146 * 299.99952 * 17 16 14 46 46 H 0.96996 * 119.99887 * 0.02562 * 20 18 17 47 47 H 0.97001 * 119.99781 * 359.97438 * 24 23 21 48 48 H 1.09004 * 113.60889 * 89.15517 * 29 14 13 49 49 H 1.08995 * 113.62129 * 220.05969 * 29 14 13 50 50 H 1.08997 * 109.91698 * 94.01689 * 30 6 5 51 51 H 1.09000 * 109.92113 * 215.31573 * 30 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9091 1.0220 0.0000 4 6 2.0665 -0.7714 1.2276 5 6 3.2855 -1.5348 0.6515 6 7 2.8312 -1.9236 -0.7082 7 6 3.9750 -2.2263 -1.5789 8 6 4.8662 -3.2370 -0.9043 9 8 4.5773 -3.6629 0.1940 10 7 5.9849 -3.6669 -1.5208 11 6 6.8511 -4.6499 -0.8652 12 1 6.7448 -4.6509 0.2196 13 6 6.7782 -6.0531 -1.4946 14 6 7.9109 -5.6035 -2.4325 15 1 7.5573 -5.1338 -3.3503 16 7 8.9208 -6.6423 -2.6757 17 6 8.7806 -7.2071 -4.0246 18 6 9.8306 -8.2671 -4.2368 19 8 10.6178 -8.5269 -3.3513 20 7 9.8942 -8.9272 -5.4101 21 6 10.8496 -9.8912 -5.6033 22 1 11.5511 -10.1220 -4.8152 23 6 10.9155 -10.5714 -6.8132 24 7 10.0623 -10.2903 -7.7723 25 14 12.2170 -11.8854 -7.0762 26 1 12.0750 -12.4568 -8.4395 27 1 13.5661 -11.2823 -6.9297 28 1 12.0440 -12.9622 -6.0683 29 6 8.3125 -4.5975 -1.3410 30 6 2.0644 -0.7684 -1.2229 31 1 -0.3634 -1.0269 0.0385 32 1 -0.3633 0.5468 0.8701 33 1 -0.3633 0.4802 -0.9085 34 1 2.3791 -0.0805 2.0108 35 1 1.3161 -1.4660 1.6050 36 1 3.5046 -2.4182 1.2511 37 1 4.1563 -0.8818 0.5940 38 1 4.5394 -1.3132 -1.7680 39 1 3.6148 -2.6330 -2.5238 40 1 6.2162 -3.3260 -2.3990 41 1 5.8386 -6.2534 -2.0095 42 1 7.0673 -6.8530 -0.8129 43 1 8.8717 -7.3656 -1.9739 44 1 8.9072 -6.4167 -4.7644 45 1 7.7905 -7.6502 -4.1319 46 1 9.2644 -8.7197 -6.1180 47 1 9.3863 -9.6082 -7.6356 48 1 9.0219 -4.9987 -0.6171 49 1 8.6098 -3.6245 -1.7319 50 1 2.7161 -0.1227 -1.8114 51 1 1.2326 -1.1177 -1.8346 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713168417.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:13 Heat of formation + Delta-G solvation = -67.986617 kcal Electronic energy + Delta-G solvation = -28480.580297 eV Core-core repulsion = 24414.274147 eV Total energy + Delta-G solvation = -4066.306150 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.50383 -40.51368 -40.00697 -38.93996 -36.49646 -35.49136 -34.37659 -33.54407 -33.03343 -30.69993 -28.84885 -28.08393 -26.68462 -26.17559 -25.69318 -23.99482 -22.61048 -21.72413 -21.47313 -20.98258 -20.49717 -19.97474 -18.30386 -18.11349 -17.39316 -17.01347 -16.70124 -16.59324 -16.50031 -16.24716 -15.77228 -15.70749 -15.41960 -14.98175 -14.77124 -14.54563 -14.41436 -14.33708 -14.09399 -13.72788 -13.56282 -13.40392 -13.32277 -13.15648 -12.98569 -12.76758 -12.66495 -12.54426 -12.35917 -11.91678 -11.89322 -11.81125 -11.75474 -11.64706 -11.52726 -11.51255 -11.41063 -10.66615 -10.40191 -10.11221 -10.08753 -9.39498 -9.30189 -8.92803 -6.06830 1.52684 1.54976 1.57713 1.82970 2.00609 2.00741 2.40791 2.82689 3.05897 3.16658 3.34298 3.55536 3.61293 3.67044 3.69849 3.89054 3.94682 3.96677 4.02333 4.13689 4.25773 4.32884 4.38149 4.39244 4.47766 4.53826 4.55704 4.64720 4.65591 4.76507 4.82072 4.85419 4.91143 4.94946 4.99817 5.04252 5.08746 5.18082 5.23343 5.25258 5.42804 5.55150 5.61880 5.87682 5.95317 5.96231 6.05956 6.32372 6.55030 6.58197 6.74524 7.25648 7.44212 7.92623 8.55021 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.032102 B = 0.001479 C = 0.001435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.023585 B =18930.755234 C =19511.786799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.102 4.102 3 H 0.084 0.916 4 C -0.121 4.121 5 C 0.034 3.966 6 N -0.523 5.523 7 C 0.029 3.971 8 C 0.511 3.489 9 O -0.565 6.565 10 N -0.700 5.700 11 C 0.130 3.870 12 H 0.088 0.912 13 C -0.178 4.178 14 C 0.069 3.931 15 H 0.114 0.886 16 N -0.671 5.671 17 C 0.066 3.934 18 C 0.439 3.561 19 O -0.619 6.619 20 N -0.586 5.586 21 C -0.412 4.412 22 H 0.072 0.928 23 C -0.041 4.041 24 N -0.916 5.916 25 Si 1.133 2.867 26 H -0.272 1.272 27 H -0.273 1.273 28 H -0.274 1.274 29 C -0.122 4.122 30 C 0.038 3.962 31 H 0.049 0.951 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.079 0.921 35 H 0.066 0.934 36 H 0.082 0.918 37 H 0.037 0.963 38 H 0.089 0.911 39 H 0.125 0.875 40 H 0.416 0.584 41 H 0.068 0.932 42 H 0.085 0.915 43 H 0.345 0.655 44 H 0.109 0.891 45 H 0.066 0.934 46 H 0.385 0.615 47 H 0.260 0.740 48 H 0.092 0.908 49 H 0.089 0.911 50 H 0.059 0.941 51 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.459 24.456 10.933 32.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.121 4.121 3 H 0.103 0.897 4 C -0.159 4.159 5 C -0.094 4.094 6 N -0.248 5.248 7 C -0.102 4.102 8 C 0.299 3.701 9 O -0.443 6.443 10 N -0.353 5.353 11 C 0.023 3.977 12 H 0.106 0.894 13 C -0.218 4.218 14 C -0.041 4.041 15 H 0.132 0.868 16 N -0.302 5.302 17 C -0.067 4.067 18 C 0.227 3.773 19 O -0.505 6.505 20 N -0.225 5.225 21 C -0.542 4.542 22 H 0.090 0.910 23 C -0.239 4.239 24 N -0.555 5.555 25 Si 0.953 3.047 26 H -0.197 1.197 27 H -0.198 1.198 28 H -0.199 1.199 29 C -0.161 4.161 30 C -0.090 4.090 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.097 0.903 35 H 0.085 0.915 36 H 0.100 0.900 37 H 0.055 0.945 38 H 0.106 0.894 39 H 0.143 0.857 40 H 0.253 0.747 41 H 0.087 0.913 42 H 0.104 0.896 43 H 0.165 0.835 44 H 0.127 0.873 45 H 0.084 0.916 46 H 0.219 0.781 47 H 0.070 0.930 48 H 0.110 0.890 49 H 0.108 0.892 50 H 0.077 0.923 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -17.366 22.850 11.000 30.736 hybrid contribution -0.927 1.140 0.501 1.553 sum -18.293 23.990 11.501 32.286 Atomic orbital electron populations 1.21798 0.93716 1.01774 1.02329 1.22017 0.97012 0.99172 0.93872 0.89722 1.22620 0.97017 0.98631 0.97636 1.23359 0.96276 0.99019 0.90702 1.64644 1.20111 1.37633 1.02392 1.22305 0.91809 0.98073 0.97980 1.21008 0.81194 0.82361 0.85548 1.90659 1.72761 1.58896 1.22021 1.45567 1.23597 1.43697 1.22389 1.21564 0.90615 0.88102 0.97434 0.89422 1.24175 1.00016 0.97775 0.99865 1.23264 0.89457 0.93325 0.98066 0.86790 1.60058 1.50885 1.16884 1.02376 1.21591 0.95427 0.95956 0.93696 1.20970 0.88305 0.85428 0.82592 1.90499 1.45959 1.69753 1.44290 1.41991 1.31117 1.35005 1.14422 1.20531 1.12978 1.17209 1.03446 0.90964 1.27798 1.03009 1.02576 0.90518 1.70974 1.17942 1.32451 1.34160 0.82640 0.72442 0.72872 0.76787 1.19684 1.19832 1.19898 1.23365 0.94595 1.00033 0.98137 1.23104 0.98206 0.90400 0.97269 0.93159 0.92139 0.91688 0.90286 0.91535 0.90028 0.94472 0.89374 0.85749 0.74696 0.91312 0.89617 0.83509 0.87347 0.91636 0.78085 0.92959 0.88987 0.89214 0.92271 0.89724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 8.90 71.98 0.64 -0.59 16 2 C -0.10 -1.04 3.59 -9.91 -0.04 -1.08 16 3 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 4 C -0.12 -1.64 6.61 31.80 0.21 -1.43 16 5 C 0.03 0.60 5.30 86.65 0.46 1.06 16 6 N -0.52 -8.44 5.26 -887.57 -4.67 -13.11 16 7 C 0.03 0.36 5.52 85.55 0.47 0.83 16 8 C 0.51 9.25 7.54 87.65 0.66 9.91 16 9 O -0.57 -15.20 13.12 -3.05 -0.04 -15.24 16 10 N -0.70 -9.75 5.26 -439.75 -2.32 -12.06 16 11 C 0.13 2.30 4.33 45.58 0.20 2.49 16 12 H 0.09 1.90 7.46 -2.39 -0.02 1.88 16 13 C -0.18 -3.49 7.52 31.18 0.23 -3.25 16 14 C 0.07 1.37 4.04 45.44 0.18 1.55 16 15 H 0.11 1.83 7.88 -2.39 -0.02 1.81 16 16 N -0.67 -19.70 6.24 -492.85 -3.07 -22.78 16 17 C 0.07 2.11 6.02 85.56 0.52 2.63 16 18 C 0.44 20.60 7.82 87.66 0.69 21.29 16 19 O -0.62 -34.41 15.78 -3.05 -0.05 -34.46 16 20 N -0.59 -29.55 5.28 -306.98 -1.62 -31.17 16 21 C -0.41 -23.59 9.68 84.04 0.81 -22.77 16 22 H 0.07 4.45 7.16 -2.91 -0.02 4.43 16 23 C -0.04 -2.20 5.50 84.93 0.47 -1.74 16 24 N -0.92 -50.80 13.68 21.66 0.30 -50.51 16 25 Si 1.13 48.41 29.92 68.60 2.05 50.46 16 26 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 27 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 28 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 29 C -0.12 -2.13 7.63 31.12 0.24 -1.89 16 30 C 0.04 0.41 6.36 86.45 0.55 0.96 16 31 H 0.05 0.56 8.11 -2.39 -0.02 0.54 16 32 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 34 H 0.08 0.89 8.14 -2.38 -0.02 0.87 16 35 H 0.07 1.02 7.84 -2.39 -0.02 1.00 16 36 H 0.08 1.97 5.97 -2.39 -0.01 1.95 16 37 H 0.04 0.62 8.02 -2.39 -0.02 0.60 16 38 H 0.09 0.68 7.81 -2.39 -0.02 0.66 16 39 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.42 3.28 8.70 -92.71 -0.81 2.47 16 41 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.09 1.83 7.83 -2.38 -0.02 1.81 16 43 H 0.35 11.05 7.91 -89.69 -0.71 10.34 16 44 H 0.11 3.02 8.13 -2.39 -0.02 3.00 16 45 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 46 H 0.38 17.67 6.73 -92.71 -0.62 17.05 16 47 H 0.26 13.86 6.78 -92.71 -0.63 13.23 16 48 H 0.09 1.82 8.14 -2.38 -0.02 1.80 16 49 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 50 H 0.06 0.48 7.57 -2.39 -0.02 0.46 16 51 H 0.08 0.90 7.68 -2.39 -0.02 0.88 16 Total: -1.00 -76.27 407.06 -4.17 -80.45 By element: Atomic # 1 Polarization: 41.48 SS G_CDS: -1.04 Total: 40.44 kcal Atomic # 6 Polarization: 1.68 SS G_CDS: 6.29 Total: 7.97 kcal Atomic # 7 Polarization: -118.24 SS G_CDS: -11.38 Total: -129.62 kcal Atomic # 8 Polarization: -49.61 SS G_CDS: -0.09 Total: -49.70 kcal Atomic # 14 Polarization: 48.41 SS G_CDS: 2.05 Total: 50.46 kcal Total: -76.27 -4.17 -80.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713168417.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.462 kcal (2) G-P(sol) polarization free energy of solvation -76.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds