Wall clock time and date at job start Tue Mar 31 2020 22:04:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 110.06454 * 2 1 4 4 C 1.53987 * 109.91851 * 238.79591 * 2 1 3 5 5 H 1.08997 * 110.31360 * 120.50278 * 4 2 1 6 6 C 1.50702 * 110.30813 * 358.43614 * 4 2 1 7 7 O 1.21281 * 120.00241 * 273.42265 * 6 4 2 8 8 N 1.34781 * 119.99902 * 93.42326 * 6 4 2 9 9 C 1.46503 * 120.00003 * 180.02562 * 8 6 4 10 10 H 1.09002 * 112.84596 * 334.66900 * 9 8 6 11 11 C 1.53775 * 113.61523 * 105.86058 * 9 8 6 12 12 C 1.53956 * 87.02110 * 139.95223 * 11 9 8 13 13 H 1.09000 * 113.53239 * 89.18618 * 12 11 9 14 14 N 1.46896 * 113.74805 * 220.05944 * 12 11 9 15 15 C 1.46894 * 111.00124 * 252.59886 * 14 12 11 16 16 C 1.50693 * 109.47514 * 179.97438 * 15 14 12 17 17 O 1.21291 * 119.99790 * 359.97438 * 16 15 14 18 18 N 1.34774 * 120.00344 * 179.97438 * 16 15 14 19 19 C 1.37100 * 120.00087 * 180.02562 * 18 16 15 20 20 H 1.08003 * 120.00181 * 359.97438 * 19 18 16 21 21 C 1.38955 * 120.00182 * 180.02562 * 19 18 16 22 22 N 1.31417 * 119.99448 * 359.97438 * 21 19 18 23 23 Si 1.86792 * 120.00101 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47459 * 89.99535 * 23 21 19 25 25 H 1.48499 * 109.47322 * 209.99538 * 23 21 19 26 26 H 1.48503 * 109.47368 * 329.99470 * 23 21 19 27 27 C 1.53774 * 113.61516 * 203.47462 * 9 8 6 28 28 C 1.54592 * 105.22877 * 239.47347 * 4 2 1 29 29 C 1.55196 * 102.79947 * 338.01108 * 28 4 2 30 30 N 1.47900 * 109.91896 * 121.20504 * 2 1 3 31 31 C 1.46900 * 110.99833 * 265.19984 * 30 2 1 32 32 H 1.08997 * 109.47348 * 182.92797 * 1 2 3 33 33 H 1.09002 * 109.47173 * 302.92915 * 1 2 3 34 34 H 1.08999 * 109.47543 * 62.92461 * 1 2 3 35 35 H 0.96999 * 120.00132 * 0.02562 * 8 6 4 36 36 H 1.09000 * 113.61981 * 254.53020 * 11 9 8 37 37 H 1.09001 * 113.61510 * 25.43495 * 11 9 8 38 38 H 1.00894 * 111.00469 * 128.64129 * 14 12 11 39 39 H 1.08999 * 109.47026 * 300.00224 * 15 14 12 40 40 H 1.09001 * 109.47289 * 59.99699 * 15 14 12 41 41 H 0.96997 * 120.00224 * 0.02562 * 18 16 15 42 42 H 0.97000 * 119.99213 * 180.02562 * 22 21 19 43 43 H 1.09007 * 113.61424 * 334.56230 * 27 9 8 44 44 H 1.09002 * 113.62134 * 105.46834 * 27 9 8 45 45 H 1.08999 * 110.72745 * 96.34844 * 28 4 2 46 46 H 1.08999 * 110.72330 * 219.63522 * 28 4 2 47 47 H 1.08999 * 110.68320 * 278.98934 * 29 28 4 48 48 H 1.09000 * 110.78612 * 155.93082 * 29 28 4 49 49 H 1.08996 * 109.47675 * 59.99957 * 31 30 2 50 50 H 1.09004 * 109.46706 * 179.97438 * 31 30 2 51 51 H 1.08997 * 109.46985 * 299.99608 * 31 30 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9039 1.0238 0.0000 4 6 2.0546 -0.7501 -1.2383 5 1 2.6713 -0.0895 -1.8477 6 6 0.9045 -1.2872 -2.0506 7 8 0.4281 -2.3704 -1.7849 8 7 0.4053 -0.5638 -3.0724 9 6 -0.7131 -1.0857 -3.8618 10 1 -0.7706 -2.1741 -3.8462 11 6 -2.0536 -0.3938 -3.5632 12 6 -2.3289 -0.4518 -5.0768 13 1 -2.8295 -1.3668 -5.3934 14 7 -2.9656 0.7603 -5.6092 15 6 -4.3749 0.5123 -5.9409 16 6 -4.9934 1.7754 -6.4821 17 8 -4.3259 2.7832 -6.5813 18 7 -6.2882 1.7852 -6.8559 19 6 -6.8508 2.9343 -7.3488 20 1 -6.2564 3.8317 -7.4371 21 6 -8.1859 2.9446 -7.7337 22 7 -8.9092 1.8527 -7.6257 23 14 -8.9521 4.5099 -8.4059 24 1 -8.7841 4.5495 -9.8808 25 1 -10.3987 4.5361 -8.0716 26 1 -8.2826 5.6887 -7.7996 27 6 -0.8040 -0.4841 -5.2740 28 6 2.9053 -1.9131 -0.6784 29 6 3.2681 -1.4185 0.7472 30 7 2.0339 -0.7204 1.1893 31 6 2.3211 0.2123 2.2873 32 1 -0.3634 -1.0263 0.0525 33 1 -0.3634 0.5586 0.8626 34 1 -0.3634 0.4677 -0.9150 35 1 0.7865 0.3024 -3.2852 36 1 -2.7367 -1.0023 -2.9706 37 1 -1.9454 0.6200 -3.1777 38 1 -2.4620 1.1114 -6.4099 39 1 -4.4383 -0.2747 -6.6924 40 1 -4.9101 0.2017 -5.0436 41 1 -6.8222 0.9794 -6.7762 42 1 -9.8411 1.8598 -7.8947 43 1 -0.3535 0.5050 -5.3571 44 1 -0.4798 -1.1654 -6.0607 45 1 2.3199 -2.8314 -0.6314 46 1 3.8038 -2.0574 -1.2783 47 1 4.1097 -0.7267 0.7120 48 1 3.4904 -2.2597 1.4036 49 1 1.4095 0.7435 2.5607 50 1 2.6896 -0.3438 3.1493 51 1 3.0770 0.9291 1.9666 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713191489.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:22 Heat of formation + Delta-G solvation = -43.659533 kcal Electronic energy + Delta-G solvation = -29083.669751 eV Core-core repulsion = 25018.418502 eV Total energy + Delta-G solvation = -4065.251248 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.92979 -39.44800 -38.27185 -37.76474 -34.61494 -33.85933 -32.99408 -32.24563 -31.62194 -31.18288 -27.32371 -26.64258 -25.80164 -25.26646 -24.45320 -23.30461 -21.66868 -21.30502 -20.29879 -19.49117 -19.05430 -17.87627 -17.38521 -16.80313 -16.46248 -15.89882 -15.61046 -15.31300 -15.26516 -14.97900 -14.85972 -14.44060 -14.26606 -13.99237 -13.58474 -13.44538 -13.32453 -12.94548 -12.82788 -12.57697 -12.49854 -12.41362 -12.13905 -11.97169 -11.76837 -11.68422 -11.55671 -11.52172 -11.27292 -11.20958 -11.12731 -11.01829 -10.96854 -10.60827 -10.39538 -10.21706 -9.89448 -9.51074 -9.15375 -8.86475 -8.44804 -8.07991 -7.95945 -6.41714 -3.82574 2.40624 2.93680 3.17654 3.26366 3.32336 3.52440 3.91050 4.09633 4.13363 4.13975 4.34721 4.38939 4.47324 4.53483 4.75766 4.79927 4.84817 4.85854 4.91460 4.96548 5.01631 5.06044 5.20505 5.26369 5.26976 5.38013 5.41517 5.45270 5.49857 5.56538 5.57829 5.67659 5.69170 5.80216 5.83670 5.88152 5.97599 6.03457 6.06978 6.12880 6.28440 6.43984 6.47351 6.61697 7.24857 7.32514 7.55110 7.65229 8.04280 8.06323 8.61226 9.17775 9.54461 10.05782 10.76004 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.024748 B = 0.001681 C = 0.001627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.113355 B =16651.793617 C =17202.341461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.080 3.920 3 H 0.060 0.940 4 C -0.121 4.121 5 H 0.093 0.907 6 C 0.531 3.469 7 O -0.534 6.534 8 N -0.718 5.718 9 C 0.123 3.877 10 H 0.113 0.887 11 C -0.136 4.136 12 C 0.062 3.938 13 H 0.075 0.925 14 N -0.654 5.654 15 C 0.049 3.951 16 C 0.441 3.559 17 O -0.585 6.585 18 N -0.564 5.564 19 C -0.300 4.300 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.901 5.901 23 Si 0.931 3.069 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.270 1.270 27 C -0.148 4.148 28 C -0.112 4.112 29 C 0.036 3.964 30 N -0.515 5.515 31 C 0.016 3.984 32 H 0.074 0.926 33 H 0.057 0.943 34 H 0.063 0.937 35 H 0.400 0.600 36 H 0.068 0.932 37 H 0.093 0.907 38 H 0.350 0.650 39 H 0.044 0.956 40 H 0.086 0.914 41 H 0.392 0.608 42 H 0.271 0.729 43 H 0.094 0.906 44 H 0.073 0.927 45 H 0.096 0.904 46 H 0.075 0.925 47 H 0.045 0.955 48 H 0.086 0.914 49 H 0.070 0.930 50 H 0.070 0.930 51 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.117 -8.142 14.000 29.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.029 4.029 3 H 0.078 0.922 4 C -0.143 4.143 5 H 0.111 0.889 6 C 0.317 3.683 7 O -0.410 6.410 8 N -0.369 5.369 9 C 0.017 3.983 10 H 0.131 0.869 11 C -0.176 4.176 12 C -0.049 4.049 13 H 0.093 0.907 14 N -0.286 5.286 15 C -0.083 4.083 16 C 0.226 3.774 17 O -0.469 6.469 18 N -0.200 5.200 19 C -0.429 4.429 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.543 5.543 23 Si 0.758 3.242 24 H -0.204 1.204 25 H -0.209 1.209 26 H -0.194 1.194 27 C -0.187 4.187 28 C -0.150 4.150 29 C -0.092 4.092 30 N -0.239 5.239 31 C -0.133 4.133 32 H 0.093 0.907 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.235 0.765 36 H 0.087 0.913 37 H 0.112 0.888 38 H 0.170 0.830 39 H 0.062 0.938 40 H 0.104 0.896 41 H 0.226 0.774 42 H 0.081 0.919 43 H 0.113 0.887 44 H 0.091 0.909 45 H 0.115 0.885 46 H 0.094 0.906 47 H 0.063 0.937 48 H 0.104 0.896 49 H 0.089 0.911 50 H 0.089 0.911 51 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 23.472 -8.372 14.890 29.030 hybrid contribution -0.011 0.856 -1.476 1.707 sum 23.462 -7.516 13.414 28.051 Atomic orbital electron populations 1.21966 0.93187 1.03731 1.01916 1.22249 0.97048 0.95413 0.88168 0.92175 1.22281 0.96103 0.99160 0.96731 0.88899 1.20191 0.83636 0.84709 0.79741 1.90695 1.60787 1.21475 1.68026 1.46069 1.35646 1.22338 1.32840 1.22366 0.85888 0.99454 0.90567 0.86940 1.23594 0.95797 1.01724 0.96480 1.22833 0.92956 0.92818 0.96316 0.90745 1.60186 1.01758 1.27853 1.38851 1.21739 0.90091 0.96452 1.00048 1.19823 0.83317 0.89755 0.84498 1.90515 1.61971 1.34938 1.59485 1.41870 1.08817 1.13389 1.55942 1.19705 0.94073 0.91047 1.38119 0.87932 1.25271 0.96310 0.98606 0.97792 1.69618 1.08985 1.27504 1.48157 0.85849 0.77992 0.81393 0.79000 1.20439 1.20918 1.19422 1.23613 0.96631 1.02046 0.96397 1.22557 0.99105 0.98538 0.94781 1.23291 0.91166 0.98558 0.96200 1.64702 1.26570 1.26334 1.06327 1.22533 1.00756 0.95201 0.94812 0.90712 0.92345 0.91779 0.76497 0.91329 0.88822 0.82953 0.93802 0.89586 0.77444 0.91872 0.88741 0.90852 0.88545 0.90642 0.93654 0.89597 0.91142 0.91089 0.95388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 8.36 37.16 0.31 -1.12 16 2 C 0.08 0.64 3.09 -66.65 -0.21 0.44 16 3 H 0.06 0.42 7.73 -51.93 -0.40 0.02 16 4 C -0.12 -0.92 3.37 -90.42 -0.30 -1.22 16 5 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 6 C 0.53 5.31 4.75 -10.98 -0.05 5.26 16 7 O -0.53 -7.39 14.60 5.56 0.08 -7.30 16 8 N -0.72 -6.07 4.85 -53.02 -0.26 -6.32 16 9 C 0.12 1.19 4.21 -67.12 -0.28 0.90 16 10 H 0.11 1.22 7.50 -51.93 -0.39 0.83 16 11 C -0.14 -1.54 7.70 -25.83 -0.20 -1.74 16 12 C 0.06 0.72 4.14 -66.81 -0.28 0.45 16 13 H 0.07 0.84 7.87 -51.93 -0.41 0.43 16 14 N -0.65 -10.14 6.19 -107.04 -0.66 -10.80 16 15 C 0.05 0.86 6.01 -4.98 -0.03 0.83 16 16 C 0.44 10.38 7.82 -10.99 -0.09 10.29 16 17 O -0.58 -15.79 15.78 5.55 0.09 -15.70 16 18 N -0.56 -14.32 5.29 -10.96 -0.06 -14.38 16 19 C -0.30 -8.39 9.68 -14.93 -0.14 -8.53 16 20 H 0.10 3.00 7.16 -52.48 -0.38 2.63 16 21 C 0.02 0.59 5.50 -17.46 -0.10 0.49 16 22 N -0.90 -24.58 13.05 55.50 0.72 -23.86 16 23 Si 0.93 21.07 29.55 -169.99 -5.02 16.04 16 24 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 25 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 26 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 27 C -0.15 -1.36 7.40 -25.92 -0.19 -1.55 16 28 C -0.11 -0.84 6.57 -24.73 -0.16 -1.00 16 29 C 0.04 0.24 6.57 -1.76 -0.01 0.23 16 30 N -0.52 -4.29 5.18 -230.63 -1.20 -5.49 16 31 C 0.02 0.10 9.40 60.06 0.56 0.67 16 32 H 0.07 0.91 7.04 -51.93 -0.37 0.54 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.60 7.08 -51.93 -0.37 0.23 16 35 H 0.40 2.52 8.71 -40.82 -0.36 2.17 16 36 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.35 5.54 8.25 -39.30 -0.32 5.22 16 39 H 0.04 0.69 8.13 -51.93 -0.42 0.27 16 40 H 0.09 1.43 8.14 -51.93 -0.42 1.00 16 41 H 0.39 9.54 7.90 -40.82 -0.32 9.22 16 42 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 43 H 0.09 0.84 8.11 -51.93 -0.42 0.42 16 44 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.10 0.96 6.89 -51.93 -0.36 0.60 16 46 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.05 0.26 7.96 -51.93 -0.41 -0.16 16 48 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 49 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 50 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 51 H 0.03 0.16 8.00 -51.93 -0.42 -0.26 16 LS Contribution 408.43 15.07 6.16 6.16 Total: -1.00 -33.20 408.43 -10.02 -43.22 By element: Atomic # 1 Polarization: 22.74 SS G_CDS: -8.70 Total: 14.04 kcal Atomic # 6 Polarization: 5.56 SS G_CDS: -1.17 Total: 4.39 kcal Atomic # 7 Polarization: -59.40 SS G_CDS: -1.45 Total: -60.84 kcal Atomic # 8 Polarization: -23.18 SS G_CDS: 0.17 Total: -23.01 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -33.20 -10.02 -43.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713191489.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.437 kcal (2) G-P(sol) polarization free energy of solvation -33.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds