Wall clock time and date at job start Tue Mar 31 2020 22:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 110.06454 * 2 1 4 4 C 1.53987 * 109.91851 * 238.79591 * 2 1 3 5 5 H 1.08997 * 110.31360 * 120.50278 * 4 2 1 6 6 C 1.50702 * 110.30813 * 358.43614 * 4 2 1 7 7 O 1.21281 * 120.00241 * 273.42265 * 6 4 2 8 8 N 1.34781 * 119.99902 * 93.42326 * 6 4 2 9 9 C 1.46503 * 120.00003 * 180.02562 * 8 6 4 10 10 H 1.09002 * 112.84596 * 334.66900 * 9 8 6 11 11 C 1.53775 * 113.61523 * 105.86058 * 9 8 6 12 12 C 1.53956 * 87.02110 * 139.95223 * 11 9 8 13 13 H 1.09000 * 113.53239 * 89.18618 * 12 11 9 14 14 N 1.46896 * 113.74805 * 220.05944 * 12 11 9 15 15 C 1.46894 * 111.00124 * 252.59886 * 14 12 11 16 16 C 1.50693 * 109.47514 * 179.97438 * 15 14 12 17 17 O 1.21291 * 119.99790 * 359.97438 * 16 15 14 18 18 N 1.34774 * 120.00344 * 179.97438 * 16 15 14 19 19 C 1.37100 * 120.00087 * 180.02562 * 18 16 15 20 20 H 1.08003 * 120.00181 * 359.97438 * 19 18 16 21 21 C 1.38955 * 120.00182 * 180.02562 * 19 18 16 22 22 N 1.31417 * 119.99448 * 359.97438 * 21 19 18 23 23 Si 1.86792 * 120.00101 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47459 * 89.99535 * 23 21 19 25 25 H 1.48499 * 109.47322 * 209.99538 * 23 21 19 26 26 H 1.48503 * 109.47368 * 329.99470 * 23 21 19 27 27 C 1.53774 * 113.61516 * 203.47462 * 9 8 6 28 28 C 1.54592 * 105.22877 * 239.47347 * 4 2 1 29 29 C 1.55196 * 102.79947 * 338.01108 * 28 4 2 30 30 N 1.47900 * 109.91896 * 121.20504 * 2 1 3 31 31 C 1.46900 * 110.99833 * 265.19984 * 30 2 1 32 32 H 1.08997 * 109.47348 * 182.92797 * 1 2 3 33 33 H 1.09002 * 109.47173 * 302.92915 * 1 2 3 34 34 H 1.08999 * 109.47543 * 62.92461 * 1 2 3 35 35 H 0.96999 * 120.00132 * 0.02562 * 8 6 4 36 36 H 1.09000 * 113.61981 * 254.53020 * 11 9 8 37 37 H 1.09001 * 113.61510 * 25.43495 * 11 9 8 38 38 H 1.00894 * 111.00469 * 128.64129 * 14 12 11 39 39 H 1.08999 * 109.47026 * 300.00224 * 15 14 12 40 40 H 1.09001 * 109.47289 * 59.99699 * 15 14 12 41 41 H 0.96997 * 120.00224 * 0.02562 * 18 16 15 42 42 H 0.97000 * 119.99213 * 180.02562 * 22 21 19 43 43 H 1.09007 * 113.61424 * 334.56230 * 27 9 8 44 44 H 1.09002 * 113.62134 * 105.46834 * 27 9 8 45 45 H 1.08999 * 110.72745 * 96.34844 * 28 4 2 46 46 H 1.08999 * 110.72330 * 219.63522 * 28 4 2 47 47 H 1.08999 * 110.68320 * 278.98934 * 29 28 4 48 48 H 1.09000 * 110.78612 * 155.93082 * 29 28 4 49 49 H 1.08996 * 109.47675 * 59.99957 * 31 30 2 50 50 H 1.09004 * 109.46706 * 179.97438 * 31 30 2 51 51 H 1.08997 * 109.46985 * 299.99608 * 31 30 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9039 1.0238 0.0000 4 6 2.0546 -0.7501 -1.2383 5 1 2.6713 -0.0895 -1.8477 6 6 0.9045 -1.2872 -2.0506 7 8 0.4281 -2.3704 -1.7849 8 7 0.4053 -0.5638 -3.0724 9 6 -0.7131 -1.0857 -3.8618 10 1 -0.7706 -2.1741 -3.8462 11 6 -2.0536 -0.3938 -3.5632 12 6 -2.3289 -0.4518 -5.0768 13 1 -2.8295 -1.3668 -5.3934 14 7 -2.9656 0.7603 -5.6092 15 6 -4.3749 0.5123 -5.9409 16 6 -4.9934 1.7754 -6.4821 17 8 -4.3259 2.7832 -6.5813 18 7 -6.2882 1.7852 -6.8559 19 6 -6.8508 2.9343 -7.3488 20 1 -6.2564 3.8317 -7.4371 21 6 -8.1859 2.9446 -7.7337 22 7 -8.9092 1.8527 -7.6257 23 14 -8.9521 4.5099 -8.4059 24 1 -8.7841 4.5495 -9.8808 25 1 -10.3987 4.5361 -8.0716 26 1 -8.2826 5.6887 -7.7996 27 6 -0.8040 -0.4841 -5.2740 28 6 2.9053 -1.9131 -0.6784 29 6 3.2681 -1.4185 0.7472 30 7 2.0339 -0.7204 1.1893 31 6 2.3211 0.2123 2.2873 32 1 -0.3634 -1.0263 0.0525 33 1 -0.3634 0.5586 0.8626 34 1 -0.3634 0.4677 -0.9150 35 1 0.7865 0.3024 -3.2852 36 1 -2.7367 -1.0023 -2.9706 37 1 -1.9454 0.6200 -3.1777 38 1 -2.4620 1.1114 -6.4099 39 1 -4.4383 -0.2747 -6.6924 40 1 -4.9101 0.2017 -5.0436 41 1 -6.8222 0.9794 -6.7762 42 1 -9.8411 1.8598 -7.8947 43 1 -0.3535 0.5050 -5.3571 44 1 -0.4798 -1.1654 -6.0607 45 1 2.3199 -2.8314 -0.6314 46 1 3.8038 -2.0574 -1.2783 47 1 4.1097 -0.7267 0.7120 48 1 3.4904 -2.2597 1.4036 49 1 1.4095 0.7435 2.5607 50 1 2.6896 -0.3438 3.1493 51 1 3.0770 0.9291 1.9666 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713191489.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:21 Heat of formation + Delta-G solvation = -70.284447 kcal Electronic energy + Delta-G solvation = -29084.824294 eV Core-core repulsion = 25018.418502 eV Total energy + Delta-G solvation = -4066.405791 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.67195 -40.43005 -39.83300 -38.70914 -36.12812 -35.42627 -33.91003 -33.26157 -32.95038 -32.29231 -28.56495 -27.62414 -26.68318 -26.07988 -25.86099 -24.32119 -22.43849 -21.94161 -21.26511 -20.95734 -20.12224 -19.85790 -18.14796 -17.85444 -17.34469 -17.06768 -16.82949 -16.42169 -16.29684 -16.10236 -15.90295 -15.65803 -15.49777 -15.11466 -14.96503 -14.44522 -14.28592 -14.07276 -13.54631 -13.51719 -13.46743 -13.34420 -13.27231 -13.13758 -13.00109 -12.86401 -12.72153 -12.42324 -12.29747 -12.17002 -12.13536 -12.12228 -11.92488 -11.88284 -11.69083 -11.52247 -11.49060 -10.72903 -10.33171 -10.01835 -9.96241 -9.39823 -9.31451 -8.46770 -5.95689 1.38157 1.41952 1.54858 1.63441 2.05046 2.19590 2.30093 2.97978 2.99783 3.20598 3.47625 3.51510 3.53797 3.59318 3.69725 3.88143 3.97623 4.04818 4.17970 4.27368 4.30897 4.31234 4.44026 4.46367 4.49201 4.50865 4.56704 4.61858 4.70870 4.76507 4.81967 4.82640 4.86846 4.96625 5.01006 5.02134 5.05369 5.09931 5.18919 5.25191 5.31275 5.40851 5.62277 5.91890 5.92875 6.09653 6.14835 6.44342 6.59662 6.62104 7.12223 7.31137 7.56068 8.10922 8.70602 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.024748 B = 0.001681 C = 0.001627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.113355 B =16651.793617 C =17202.341461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.081 3.919 3 H 0.079 0.921 4 C -0.117 4.117 5 H 0.125 0.875 6 C 0.530 3.470 7 O -0.577 6.577 8 N -0.708 5.708 9 C 0.131 3.869 10 H 0.103 0.897 11 C -0.137 4.137 12 C 0.057 3.943 13 H 0.084 0.916 14 N -0.665 5.665 15 C 0.064 3.936 16 C 0.438 3.562 17 O -0.622 6.622 18 N -0.574 5.574 19 C -0.335 4.335 20 H 0.080 0.920 21 C -0.014 4.014 22 N -0.921 5.921 23 Si 0.994 3.006 24 H -0.270 1.270 25 H -0.272 1.272 26 H -0.273 1.273 27 C -0.130 4.130 28 C -0.111 4.111 29 C 0.039 3.961 30 N -0.541 5.541 31 C 0.016 3.984 32 H 0.042 0.958 33 H 0.059 0.941 34 H 0.063 0.937 35 H 0.414 0.586 36 H 0.058 0.942 37 H 0.084 0.916 38 H 0.348 0.652 39 H 0.068 0.932 40 H 0.098 0.902 41 H 0.396 0.604 42 H 0.277 0.723 43 H 0.102 0.898 44 H 0.089 0.911 45 H 0.065 0.935 46 H 0.096 0.904 47 H 0.065 0.935 48 H 0.086 0.914 49 H 0.066 0.934 50 H 0.075 0.925 51 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.633 -7.704 13.775 30.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.027 4.027 3 H 0.097 0.903 4 C -0.139 4.139 5 H 0.143 0.857 6 C 0.317 3.683 7 O -0.457 6.457 8 N -0.358 5.358 9 C 0.025 3.975 10 H 0.121 0.879 11 C -0.177 4.177 12 C -0.053 4.053 13 H 0.102 0.898 14 N -0.298 5.298 15 C -0.069 4.069 16 C 0.226 3.774 17 O -0.509 6.509 18 N -0.211 5.211 19 C -0.464 4.464 20 H 0.098 0.902 21 C -0.214 4.214 22 N -0.562 5.562 23 Si 0.818 3.182 24 H -0.195 1.195 25 H -0.196 1.196 26 H -0.198 1.198 27 C -0.169 4.169 28 C -0.150 4.150 29 C -0.088 4.088 30 N -0.265 5.265 31 C -0.132 4.132 32 H 0.062 0.938 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.251 0.749 36 H 0.077 0.923 37 H 0.102 0.898 38 H 0.168 0.832 39 H 0.086 0.914 40 H 0.116 0.884 41 H 0.230 0.770 42 H 0.087 0.913 43 H 0.120 0.880 44 H 0.108 0.892 45 H 0.084 0.916 46 H 0.115 0.885 47 H 0.083 0.917 48 H 0.104 0.896 49 H 0.084 0.916 50 H 0.094 0.906 51 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 25.003 -7.940 14.668 30.056 hybrid contribution -0.470 0.684 -1.347 1.582 sum 24.533 -7.256 13.321 28.844 Atomic orbital electron populations 1.21886 0.94848 1.01578 1.01916 1.22245 0.95683 0.96421 0.88399 0.90308 1.22353 0.95378 0.99609 0.96570 0.85684 1.20649 0.83850 0.84095 0.79669 1.90681 1.62254 1.23529 1.69194 1.45974 1.34965 1.22710 1.32200 1.22148 0.85498 0.98796 0.91092 0.87936 1.23564 0.96780 1.01184 0.96172 1.22954 0.94540 0.91628 0.96174 0.89812 1.60165 1.00785 1.30078 1.38761 1.21589 0.91082 0.93430 1.00761 1.20876 0.82501 0.91252 0.82813 1.90481 1.62689 1.37075 1.60639 1.41951 1.09686 1.12926 1.56544 1.19684 0.94890 0.91465 1.40370 0.90221 1.26065 0.96158 1.01744 0.97410 1.69681 1.09404 1.28920 1.48145 0.84908 0.77381 0.77392 0.78538 1.19531 1.19630 1.19769 1.23510 0.94358 1.02733 0.96266 1.22536 0.99426 0.97196 0.95816 1.23304 0.91146 0.98830 0.95569 1.64655 1.27766 1.27236 1.06890 1.22544 1.00952 0.95209 0.94480 0.93845 0.92242 0.91844 0.74911 0.92284 0.89750 0.83215 0.91427 0.88439 0.77025 0.91318 0.88007 0.89221 0.91595 0.88531 0.91728 0.89602 0.91553 0.90590 0.94134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 8.36 71.98 0.60 -2.14 16 2 C 0.08 1.19 3.09 45.06 0.14 1.32 16 3 H 0.08 0.87 7.73 -2.39 -0.02 0.86 16 4 C -0.12 -1.57 3.37 -10.66 -0.04 -1.61 16 5 H 0.13 0.88 8.14 -2.39 -0.02 0.86 16 6 C 0.53 10.22 4.75 87.66 0.42 10.64 16 7 O -0.58 -16.36 14.60 -3.03 -0.04 -16.41 16 8 N -0.71 -10.96 4.85 -440.04 -2.13 -13.10 16 9 C 0.13 2.38 4.21 45.51 0.19 2.57 16 10 H 0.10 2.16 7.50 -2.39 -0.02 2.14 16 11 C -0.14 -3.02 7.70 31.18 0.24 -2.78 16 12 C 0.06 1.26 4.14 45.50 0.19 1.44 16 13 H 0.08 1.72 7.87 -2.39 -0.02 1.70 16 14 N -0.67 -19.89 6.19 -492.57 -3.05 -22.94 16 15 C 0.06 2.17 6.01 85.56 0.51 2.69 16 16 C 0.44 20.78 7.82 87.66 0.69 21.46 16 17 O -0.62 -34.17 15.78 -3.06 -0.05 -34.21 16 18 N -0.57 -29.57 5.29 -306.99 -1.62 -31.19 16 19 C -0.33 -19.06 9.68 84.04 0.81 -18.24 16 20 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 21 C -0.01 -0.75 5.50 84.93 0.47 -0.29 16 22 N -0.92 -49.90 13.05 21.67 0.28 -49.62 16 23 Si 0.99 42.95 29.55 68.60 2.03 44.98 16 24 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 25 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 26 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 27 C -0.13 -2.11 7.40 31.12 0.23 -1.88 16 28 C -0.11 -1.53 6.57 31.89 0.21 -1.32 16 29 C 0.04 0.46 6.57 86.74 0.57 1.03 16 30 N -0.54 -8.39 5.18 -883.56 -4.58 -12.97 16 31 C 0.02 0.19 9.40 127.69 1.20 1.39 16 32 H 0.04 1.10 7.04 -2.39 -0.02 1.08 16 33 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.06 1.17 7.08 -2.39 -0.02 1.15 16 35 H 0.41 4.25 8.71 -92.71 -0.81 3.44 16 36 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 38 H 0.35 10.64 8.25 -89.70 -0.74 9.90 16 39 H 0.07 2.00 8.13 -2.39 -0.02 1.98 16 40 H 0.10 3.12 8.14 -2.39 -0.02 3.10 16 41 H 0.40 19.44 7.90 -92.71 -0.73 18.70 16 42 H 0.28 14.07 8.31 -92.71 -0.77 13.30 16 43 H 0.10 1.55 8.11 -2.38 -0.02 1.53 16 44 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 45 H 0.07 1.34 6.89 -2.39 -0.02 1.32 16 46 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 47 H 0.06 0.54 7.96 -2.39 -0.02 0.52 16 48 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 49 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 50 H 0.08 0.76 8.14 -2.38 -0.02 0.74 16 51 H 0.04 0.36 8.00 -2.39 -0.02 0.34 16 Total: -1.00 -73.47 408.43 -4.06 -77.54 By element: Atomic # 1 Polarization: 44.96 SS G_CDS: -1.33 Total: 43.63 kcal Atomic # 6 Polarization: 7.85 SS G_CDS: 6.43 Total: 14.29 kcal Atomic # 7 Polarization: -118.71 SS G_CDS: -11.10 Total: -129.81 kcal Atomic # 8 Polarization: -50.53 SS G_CDS: -0.09 Total: -50.62 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Total: -73.47 -4.06 -77.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713191489.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.252 kcal (2) G-P(sol) polarization free energy of solvation -73.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds