Wall clock time and date at job start Tue Mar 31 2020 22:43:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47029 * 2 1 4 4 N 1.46506 * 109.46957 * 119.99387 * 2 1 3 5 5 C 1.34775 * 120.00213 * 275.00192 * 4 2 1 6 6 O 1.21278 * 119.99989 * 0.02562 * 5 4 2 7 7 C 1.50697 * 119.99925 * 180.02562 * 5 4 2 8 8 N 1.46497 * 109.47119 * 179.97438 * 7 5 4 9 9 C 1.46384 * 119.32914 * 89.99818 * 8 7 5 10 10 C 1.53242 * 109.15650 * 209.03773 * 9 8 7 11 11 C 1.53242 * 108.56091 * 304.52358 * 10 9 8 12 12 N 1.46385 * 109.15704 * 55.47315 * 11 10 9 13 13 C 1.34131 * 119.33295 * 269.72603 * 8 7 5 14 14 O 1.21592 * 118.69345 * 359.43162 * 13 8 7 15 15 C 1.52993 * 109.47422 * 239.99790 * 2 1 3 16 16 H 1.09002 * 109.52579 * 184.91758 * 15 2 1 17 17 C 1.53044 * 109.49924 * 64.83637 * 15 2 1 18 18 C 1.53066 * 109.66144 * 178.74759 * 17 15 2 19 19 C 1.53202 * 109.29419 * 61.15451 * 18 17 15 20 20 N 1.46921 * 108.89095 * 305.57926 * 19 18 17 21 21 C 1.36936 * 120.62896 * 233.55861 * 20 19 18 22 22 H 1.08007 * 119.99922 * 151.82366 * 21 20 19 23 23 C 1.38810 * 119.99947 * 331.81879 * 21 20 19 24 24 N 1.31613 * 120.00273 * 343.08601 * 23 21 20 25 25 Si 1.86803 * 119.99828 * 163.07892 * 23 21 20 26 26 H 1.48507 * 109.47194 * 60.00090 * 25 23 21 27 27 H 1.48502 * 109.47096 * 180.02562 * 25 23 21 28 28 H 1.48503 * 109.47239 * 300.00059 * 25 23 21 29 29 C 1.46925 * 118.73959 * 53.53708 * 20 19 18 30 30 H 1.08997 * 109.47247 * 300.00242 * 1 2 3 31 31 H 1.08999 * 109.47383 * 60.00258 * 1 2 3 32 32 H 1.09003 * 109.47029 * 180.02562 * 1 2 3 33 33 H 0.97002 * 119.99411 * 95.00777 * 4 2 1 34 34 H 1.09001 * 109.47162 * 300.00075 * 7 5 4 35 35 H 1.08998 * 109.47577 * 59.99802 * 7 5 4 36 36 H 1.08998 * 109.52260 * 328.94281 * 9 8 7 37 37 H 1.09003 * 109.52594 * 89.13378 * 9 8 7 38 38 H 1.09003 * 109.61823 * 64.23993 * 10 9 8 39 39 H 1.08996 * 109.62066 * 184.79766 * 10 9 8 40 40 H 1.08998 * 109.52287 * 175.38221 * 11 10 9 41 41 H 1.09009 * 109.52206 * 295.57449 * 11 10 9 42 42 H 0.96995 * 119.32511 * 150.96296 * 12 11 10 43 43 H 1.09002 * 109.46193 * 298.70732 * 17 15 2 44 44 H 1.09008 * 109.45699 * 58.67496 * 17 15 2 45 45 H 1.09002 * 109.39095 * 301.28091 * 18 17 15 46 46 H 1.08998 * 109.62674 * 181.17131 * 18 17 15 47 47 H 1.08997 * 109.58441 * 185.72130 * 19 18 17 48 48 H 1.09001 * 109.58226 * 65.43722 * 19 18 17 49 49 H 0.96997 * 120.00271 * 180.02562 * 24 23 21 50 50 H 1.08996 * 109.59125 * 66.18147 * 29 20 19 51 51 H 1.09004 * 109.58469 * 186.60402 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1470 -0.0181 2.3572 6 8 1.8581 1.1585 2.4117 7 6 2.6498 -0.7283 3.5876 8 7 2.6995 0.2132 4.7088 9 6 1.5254 0.3659 5.5695 10 6 1.5014 1.7880 6.1399 11 6 2.8306 2.0486 6.8565 12 7 3.9340 1.8045 5.9260 13 6 3.8219 0.9138 4.9293 14 8 4.7739 0.7378 4.1937 15 6 2.0401 -0.7213 -1.2491 16 1 3.1265 -0.7986 -1.2070 17 6 1.6320 0.0665 -2.4962 18 6 2.1673 -0.6355 -3.7467 19 6 1.5609 -2.0394 -3.8379 20 7 1.8249 -2.7541 -2.5817 21 6 2.4284 -3.9833 -2.5919 22 1 3.0193 -4.3018 -1.7458 23 6 2.2808 -4.8198 -3.6897 24 7 1.3188 -4.5994 -4.5604 25 14 3.4477 -6.2584 -3.9313 26 1 3.3517 -7.1747 -2.7665 27 1 3.0804 -6.9911 -5.1697 28 1 4.8389 -5.7528 -4.0501 29 6 1.4296 -2.1248 -1.3143 30 1 -0.3633 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 2.2491 -1.6317 1.1527 34 1 1.9776 -1.5506 3.8326 35 1 3.6491 -1.1201 3.3981 36 1 0.6211 0.1920 4.9863 37 1 1.5767 -0.3536 6.3868 38 1 1.3760 2.5055 5.3289 39 1 0.6786 1.8845 6.8482 40 1 2.8638 3.0833 7.1976 41 1 2.9207 1.3789 7.7119 42 1 4.7643 2.2940 6.0348 43 1 0.5448 0.1223 -2.5510 44 1 2.0450 1.0737 -2.4407 45 1 3.2528 -0.7115 -3.6824 46 1 1.8942 -0.0630 -4.6331 47 1 2.0147 -2.5802 -4.6684 48 1 0.4851 -1.9631 -3.9958 49 1 1.2153 -5.1842 -5.3273 50 1 0.3431 -2.0533 -1.2650 51 1 1.7967 -2.7220 -0.4796 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713276174.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:59 Heat of formation + Delta-G solvation = -43.363450 kcal Electronic energy + Delta-G solvation = -30657.790016 eV Core-core repulsion = 26592.551607 eV Total energy + Delta-G solvation = -4065.238409 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -40.98208 -39.59737 -37.95149 -36.62955 -35.35457 -34.82799 -33.00631 -31.48195 -31.00144 -30.43972 -28.48445 -27.80932 -25.79086 -25.28906 -23.92883 -23.17729 -22.17372 -20.87990 -20.10516 -19.26545 -18.58224 -17.82429 -17.48123 -17.27703 -16.62407 -15.92713 -15.74739 -15.10521 -14.87441 -14.76908 -14.44210 -14.38289 -14.15721 -14.03977 -13.84959 -13.50126 -13.31580 -13.10960 -12.76170 -12.45240 -12.34025 -12.25378 -11.86847 -11.75335 -11.74026 -11.64275 -11.60247 -10.97904 -10.89676 -10.53382 -10.46906 -10.26507 -10.17899 -10.13003 -9.97851 -9.84796 -9.60340 -9.37830 -9.35611 -8.85939 -8.76763 -8.45200 -6.65193 -5.78633 -3.21374 2.35831 2.74353 2.99703 3.37988 3.38682 3.44228 3.45682 3.59580 4.28388 4.42322 4.48714 4.67980 4.81775 4.84089 4.97267 5.06285 5.11156 5.18169 5.25897 5.29690 5.33013 5.41660 5.47209 5.60528 5.71167 5.71510 5.74777 5.88513 5.98768 6.05651 6.15808 6.26010 6.27418 6.30747 6.38655 6.52832 6.61075 6.68821 6.73841 6.82341 6.83503 6.89589 7.01197 7.41714 7.58191 7.66831 7.68675 7.78916 8.34524 8.42447 8.45254 9.21378 9.85076 10.41970 11.29550 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.017842 B = 0.002486 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.989650 B =11258.733932 C =12013.291707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.151 3.849 3 H 0.079 0.921 4 N -0.719 5.719 5 C 0.497 3.503 6 O -0.539 6.539 7 C 0.110 3.890 8 N -0.604 5.604 9 C 0.116 3.884 10 C -0.153 4.153 11 C 0.111 3.889 12 N -0.738 5.738 13 C 0.716 3.284 14 O -0.595 6.595 15 C -0.113 4.113 16 H 0.072 0.928 17 C -0.100 4.100 18 C -0.143 4.143 19 C 0.170 3.830 20 N -0.591 5.591 21 C -0.254 4.254 22 H 0.064 0.936 23 C 0.003 3.997 24 N -0.902 5.902 25 Si 0.902 3.098 26 H -0.283 1.283 27 H -0.291 1.291 28 H -0.284 1.284 29 C 0.153 3.847 30 H 0.050 0.950 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.402 0.598 34 H 0.108 0.892 35 H 0.117 0.883 36 H 0.083 0.917 37 H 0.066 0.934 38 H 0.083 0.917 39 H 0.095 0.905 40 H 0.082 0.918 41 H 0.063 0.937 42 H 0.414 0.586 43 H 0.058 0.942 44 H 0.045 0.955 45 H 0.053 0.947 46 H 0.049 0.951 47 H 0.085 0.915 48 H 0.017 0.983 49 H 0.254 0.746 50 H 0.025 0.975 51 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.933 11.759 21.748 24.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.047 3.953 3 H 0.097 0.903 4 N -0.372 5.372 5 C 0.282 3.718 6 O -0.416 6.416 7 C -0.018 4.018 8 N -0.341 5.341 9 C -0.007 4.007 10 C -0.192 4.192 11 C -0.014 4.014 12 N -0.396 5.396 13 C 0.417 3.583 14 O -0.473 6.473 15 C -0.134 4.134 16 H 0.090 0.910 17 C -0.138 4.138 18 C -0.182 4.182 19 C 0.044 3.956 20 N -0.313 5.313 21 C -0.383 4.383 22 H 0.082 0.918 23 C -0.196 4.196 24 N -0.546 5.546 25 Si 0.731 3.269 26 H -0.209 1.209 27 H -0.217 1.217 28 H -0.210 1.210 29 C 0.026 3.974 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.237 0.763 34 H 0.126 0.874 35 H 0.135 0.865 36 H 0.101 0.899 37 H 0.084 0.916 38 H 0.102 0.898 39 H 0.113 0.887 40 H 0.100 0.900 41 H 0.082 0.918 42 H 0.251 0.749 43 H 0.077 0.923 44 H 0.064 0.936 45 H 0.072 0.928 46 H 0.068 0.932 47 H 0.103 0.897 48 H 0.035 0.965 49 H 0.064 0.936 50 H 0.043 0.957 51 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -1.864 12.292 21.233 24.605 hybrid contribution 0.831 -0.939 -0.144 1.262 sum -1.033 11.353 21.089 23.973 Atomic orbital electron populations 1.22240 0.95538 1.02592 1.01693 1.20989 0.93967 0.96724 0.83662 0.90291 1.46164 1.66969 1.14382 1.09647 1.21120 0.77751 0.87865 0.85100 1.90660 1.49999 1.15862 1.85051 1.21223 1.04973 0.91145 0.84436 1.46283 1.12914 1.44246 1.30650 1.21565 0.88610 0.96737 0.93766 1.22190 0.97747 0.97582 1.01663 1.21516 0.86203 1.01836 0.91815 1.44880 1.18426 1.44111 1.32166 1.15337 0.82813 0.79069 0.81064 1.90972 1.37852 1.69735 1.48758 1.21952 1.00983 0.97989 0.92478 0.90955 1.21417 1.00417 0.97234 0.94749 1.22188 1.00641 0.99601 0.95764 1.20777 0.96578 0.88004 0.90215 1.44003 1.69748 1.17624 0.99936 1.19117 1.23292 0.92106 1.03820 0.91832 1.25032 0.97357 0.97660 0.99507 1.70021 1.30150 1.39605 1.14838 0.86389 0.81017 0.82230 0.77226 1.20896 1.21666 1.21040 1.20987 0.96097 0.90337 0.89989 0.93127 0.91539 0.91597 0.76268 0.87397 0.86478 0.89897 0.91575 0.89846 0.88657 0.89981 0.91840 0.74892 0.92319 0.93618 0.92827 0.93230 0.89657 0.96485 0.93596 0.95711 0.93443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.27 8.76 37.16 0.33 -1.95 16 2 C 0.15 2.26 2.35 -67.93 -0.16 2.10 16 3 H 0.08 1.30 7.58 -51.93 -0.39 0.91 16 4 N -0.72 -9.70 5.01 -53.81 -0.27 -9.97 16 5 C 0.50 6.98 7.86 -10.99 -0.09 6.89 16 6 O -0.54 -9.40 16.09 5.56 0.09 -9.31 16 7 C 0.11 1.20 5.80 -5.20 -0.03 1.17 16 8 N -0.60 -6.72 2.30 -181.16 -0.42 -7.14 16 9 C 0.12 0.86 6.49 -3.98 -0.03 0.83 16 10 C -0.15 -0.93 6.20 -26.48 -0.16 -1.10 16 11 C 0.11 0.62 7.20 -3.98 -0.03 0.59 16 12 N -0.74 -6.89 5.58 -65.52 -0.37 -7.26 16 13 C 0.72 9.54 8.18 -88.07 -0.72 8.82 16 14 O -0.59 -10.47 16.48 5.28 0.09 -10.38 16 15 C -0.11 -1.91 2.28 -90.50 -0.21 -2.12 16 16 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 17 C -0.10 -1.69 4.88 -26.67 -0.13 -1.82 16 18 C -0.14 -2.74 6.09 -26.59 -0.16 -2.90 16 19 C 0.17 4.02 5.30 -3.71 -0.02 4.00 16 20 N -0.59 -14.39 2.99 -172.32 -0.52 -14.91 16 21 C -0.25 -6.81 9.58 -15.06 -0.14 -6.95 16 22 H 0.06 1.66 7.89 -52.48 -0.41 1.25 16 23 C 0.00 0.09 4.92 -17.43 -0.09 0.00 16 24 N -0.90 -25.92 11.20 55.49 0.62 -25.30 16 25 Si 0.90 21.50 29.59 -169.99 -5.03 16.47 16 26 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 27 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 28 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 29 C 0.15 2.99 5.26 -3.71 -0.02 2.97 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.07 0.91 6.59 -51.93 -0.34 0.56 16 32 H 0.07 0.93 6.23 -51.93 -0.32 0.61 16 33 H 0.40 4.86 7.27 -40.82 -0.30 4.56 16 34 H 0.11 0.78 8.06 -51.93 -0.42 0.36 16 35 H 0.12 1.36 7.28 -51.93 -0.38 0.98 16 36 H 0.08 0.60 8.06 -51.93 -0.42 0.18 16 37 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 38 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.06 0.27 8.14 -51.92 -0.42 -0.15 16 42 H 0.41 3.39 8.88 -40.82 -0.36 3.03 16 43 H 0.06 0.97 6.63 -51.93 -0.34 0.62 16 44 H 0.05 0.70 8.14 -51.92 -0.42 0.28 16 45 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 46 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.09 2.27 6.06 -51.93 -0.31 1.96 16 48 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 49 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 50 H 0.03 0.50 6.06 -51.93 -0.31 0.18 16 51 H 0.05 0.88 6.75 -51.93 -0.35 0.53 16 LS Contribution 392.95 15.07 5.92 5.92 Total: -1.00 -35.66 392.95 -9.99 -45.65 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: -8.46 Total: 5.70 kcal Atomic # 6 Polarization: 12.18 SS G_CDS: -1.66 Total: 10.52 kcal Atomic # 7 Polarization: -63.62 SS G_CDS: -0.95 Total: -64.57 kcal Atomic # 8 Polarization: -19.87 SS G_CDS: 0.18 Total: -19.70 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.03 Total: 16.47 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -35.66 -9.99 -45.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713276174.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.285 kcal (2) G-P(sol) polarization free energy of solvation -35.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds