Wall clock time and date at job start Tue Mar 31 2020 22:43:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47029 * 2 1 4 4 N 1.46506 * 109.46957 * 119.99387 * 2 1 3 5 5 C 1.34775 * 120.00213 * 275.00192 * 4 2 1 6 6 O 1.21278 * 119.99989 * 0.02562 * 5 4 2 7 7 C 1.50697 * 119.99925 * 180.02562 * 5 4 2 8 8 N 1.46497 * 109.47119 * 179.97438 * 7 5 4 9 9 C 1.46384 * 119.32914 * 89.99818 * 8 7 5 10 10 C 1.53242 * 109.15650 * 209.03773 * 9 8 7 11 11 C 1.53242 * 108.56091 * 304.52358 * 10 9 8 12 12 N 1.46385 * 109.15704 * 55.47315 * 11 10 9 13 13 C 1.34131 * 119.33295 * 269.72603 * 8 7 5 14 14 O 1.21592 * 118.69345 * 359.43162 * 13 8 7 15 15 C 1.52993 * 109.47422 * 239.99790 * 2 1 3 16 16 H 1.09002 * 109.52579 * 184.91758 * 15 2 1 17 17 C 1.53044 * 109.49924 * 64.83637 * 15 2 1 18 18 C 1.53066 * 109.66144 * 178.74759 * 17 15 2 19 19 C 1.53202 * 109.29419 * 61.15451 * 18 17 15 20 20 N 1.46921 * 108.89095 * 305.57926 * 19 18 17 21 21 C 1.36936 * 120.62896 * 233.55861 * 20 19 18 22 22 H 1.08007 * 119.99922 * 151.82366 * 21 20 19 23 23 C 1.38810 * 119.99947 * 331.81879 * 21 20 19 24 24 N 1.31613 * 120.00273 * 343.08601 * 23 21 20 25 25 Si 1.86803 * 119.99828 * 163.07892 * 23 21 20 26 26 H 1.48507 * 109.47194 * 60.00090 * 25 23 21 27 27 H 1.48502 * 109.47096 * 180.02562 * 25 23 21 28 28 H 1.48503 * 109.47239 * 300.00059 * 25 23 21 29 29 C 1.46925 * 118.73959 * 53.53708 * 20 19 18 30 30 H 1.08997 * 109.47247 * 300.00242 * 1 2 3 31 31 H 1.08999 * 109.47383 * 60.00258 * 1 2 3 32 32 H 1.09003 * 109.47029 * 180.02562 * 1 2 3 33 33 H 0.97002 * 119.99411 * 95.00777 * 4 2 1 34 34 H 1.09001 * 109.47162 * 300.00075 * 7 5 4 35 35 H 1.08998 * 109.47577 * 59.99802 * 7 5 4 36 36 H 1.08998 * 109.52260 * 328.94281 * 9 8 7 37 37 H 1.09003 * 109.52594 * 89.13378 * 9 8 7 38 38 H 1.09003 * 109.61823 * 64.23993 * 10 9 8 39 39 H 1.08996 * 109.62066 * 184.79766 * 10 9 8 40 40 H 1.08998 * 109.52287 * 175.38221 * 11 10 9 41 41 H 1.09009 * 109.52206 * 295.57449 * 11 10 9 42 42 H 0.96995 * 119.32511 * 150.96296 * 12 11 10 43 43 H 1.09002 * 109.46193 * 298.70732 * 17 15 2 44 44 H 1.09008 * 109.45699 * 58.67496 * 17 15 2 45 45 H 1.09002 * 109.39095 * 301.28091 * 18 17 15 46 46 H 1.08998 * 109.62674 * 181.17131 * 18 17 15 47 47 H 1.08997 * 109.58441 * 185.72130 * 19 18 17 48 48 H 1.09001 * 109.58226 * 65.43722 * 19 18 17 49 49 H 0.96997 * 120.00271 * 180.02562 * 24 23 21 50 50 H 1.08996 * 109.59125 * 66.18147 * 29 20 19 51 51 H 1.09004 * 109.58469 * 186.60402 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1470 -0.0181 2.3572 6 8 1.8581 1.1585 2.4117 7 6 2.6498 -0.7283 3.5876 8 7 2.6995 0.2132 4.7088 9 6 1.5254 0.3659 5.5695 10 6 1.5014 1.7880 6.1399 11 6 2.8306 2.0486 6.8565 12 7 3.9340 1.8045 5.9260 13 6 3.8219 0.9138 4.9293 14 8 4.7739 0.7378 4.1937 15 6 2.0401 -0.7213 -1.2491 16 1 3.1265 -0.7986 -1.2070 17 6 1.6320 0.0665 -2.4962 18 6 2.1673 -0.6355 -3.7467 19 6 1.5609 -2.0394 -3.8379 20 7 1.8249 -2.7541 -2.5817 21 6 2.4284 -3.9833 -2.5919 22 1 3.0193 -4.3018 -1.7458 23 6 2.2808 -4.8198 -3.6897 24 7 1.3188 -4.5994 -4.5604 25 14 3.4477 -6.2584 -3.9313 26 1 3.3517 -7.1747 -2.7665 27 1 3.0804 -6.9911 -5.1697 28 1 4.8389 -5.7528 -4.0501 29 6 1.4296 -2.1248 -1.3143 30 1 -0.3633 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 2.2491 -1.6317 1.1527 34 1 1.9776 -1.5506 3.8326 35 1 3.6491 -1.1201 3.3981 36 1 0.6211 0.1920 4.9863 37 1 1.5767 -0.3536 6.3868 38 1 1.3760 2.5055 5.3289 39 1 0.6786 1.8845 6.8482 40 1 2.8638 3.0833 7.1976 41 1 2.9207 1.3789 7.7119 42 1 4.7643 2.2940 6.0348 43 1 0.5448 0.1223 -2.5510 44 1 2.0450 1.0737 -2.4407 45 1 3.2528 -0.7115 -3.6824 46 1 1.8942 -0.0630 -4.6331 47 1 2.0147 -2.5802 -4.6684 48 1 0.4851 -1.9631 -3.9958 49 1 1.2153 -5.1842 -5.3273 50 1 0.3431 -2.0533 -1.2650 51 1 1.7967 -2.7220 -0.4796 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713276174.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:58 Heat of formation + Delta-G solvation = -68.796919 kcal Electronic energy + Delta-G solvation = -30658.892894 eV Core-core repulsion = 26592.551607 eV Total energy + Delta-G solvation = -4066.341287 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.86166 -40.77592 -39.39863 -37.48145 -36.70538 -35.77132 -34.66698 -32.67794 -32.26488 -31.93526 -29.73529 -28.83681 -27.20616 -26.45118 -25.20020 -24.04871 -23.82198 -22.30284 -21.33720 -20.23234 -19.84161 -18.78715 -18.57407 -18.27117 -18.15756 -17.00055 -16.85443 -16.55811 -16.22118 -15.80951 -15.68073 -15.60879 -15.26755 -15.08708 -14.87370 -14.69300 -14.68025 -14.26258 -14.08675 -13.94354 -13.75944 -13.37150 -13.22867 -13.02546 -12.73770 -12.69545 -12.64920 -12.33468 -12.29670 -12.22939 -12.04910 -11.94532 -11.68416 -11.50810 -11.29506 -11.22828 -11.09745 -11.00953 -10.49513 -10.15323 -10.03854 -9.59420 -8.62968 -7.84653 -5.29586 1.47517 1.50686 1.55352 1.56524 1.65728 2.06667 2.40170 2.52644 2.91355 3.29962 3.59665 3.77819 3.81731 3.93449 3.99328 3.99532 4.06628 4.08658 4.29097 4.34772 4.42948 4.43100 4.47725 4.49171 4.67250 4.67441 4.70675 4.77332 4.85740 4.86344 4.91326 4.98635 5.04987 5.13761 5.21313 5.22016 5.29824 5.33704 5.34907 5.48020 5.54891 5.58373 5.61997 5.69495 5.79954 6.09012 6.41653 6.58400 6.78335 7.17602 7.26414 7.52354 7.89642 8.41366 9.21326 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.017842 B = 0.002486 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.989650 B =11258.733932 C =12013.291707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.161 3.839 3 H 0.067 0.933 4 N -0.715 5.715 5 C 0.496 3.504 6 O -0.576 6.576 7 C 0.111 3.889 8 N -0.606 5.606 9 C 0.107 3.893 10 C -0.150 4.150 11 C 0.107 3.893 12 N -0.734 5.734 13 C 0.702 3.298 14 O -0.651 6.651 15 C -0.098 4.098 16 H 0.059 0.941 17 C -0.097 4.097 18 C -0.132 4.132 19 C 0.175 3.825 20 N -0.609 5.609 21 C -0.261 4.261 22 H 0.068 0.932 23 C -0.050 4.050 24 N -0.934 5.934 25 Si 0.963 3.037 26 H -0.273 1.273 27 H -0.296 1.296 28 H -0.282 1.282 29 C 0.153 3.847 30 H 0.051 0.949 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.410 0.590 34 H 0.150 0.850 35 H 0.109 0.891 36 H 0.084 0.916 37 H 0.095 0.905 38 H 0.052 0.948 39 H 0.130 0.870 40 H 0.105 0.895 41 H 0.086 0.914 42 H 0.416 0.584 43 H 0.066 0.934 44 H 0.068 0.932 45 H 0.045 0.955 46 H 0.069 0.931 47 H 0.049 0.951 48 H -0.002 1.002 49 H 0.249 0.751 50 H 0.027 0.973 51 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.451 12.196 24.369 27.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.056 3.944 3 H 0.085 0.915 4 N -0.368 5.368 5 C 0.282 3.718 6 O -0.455 6.455 7 C -0.017 4.017 8 N -0.342 5.342 9 C -0.014 4.014 10 C -0.188 4.188 11 C -0.016 4.016 12 N -0.390 5.390 13 C 0.403 3.597 14 O -0.534 6.534 15 C -0.119 4.119 16 H 0.077 0.923 17 C -0.135 4.135 18 C -0.171 4.171 19 C 0.049 3.951 20 N -0.332 5.332 21 C -0.391 4.391 22 H 0.086 0.914 23 C -0.246 4.246 24 N -0.580 5.580 25 Si 0.792 3.208 26 H -0.198 1.198 27 H -0.222 1.222 28 H -0.209 1.209 29 C 0.028 3.972 30 H 0.070 0.930 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.247 0.753 34 H 0.167 0.833 35 H 0.127 0.873 36 H 0.103 0.897 37 H 0.113 0.887 38 H 0.071 0.929 39 H 0.148 0.852 40 H 0.123 0.877 41 H 0.105 0.895 42 H 0.254 0.746 43 H 0.084 0.916 44 H 0.086 0.914 45 H 0.064 0.936 46 H 0.087 0.913 47 H 0.068 0.932 48 H 0.016 0.984 49 H 0.058 0.942 50 H 0.045 0.955 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.414 12.742 23.925 27.214 hybrid contribution 0.949 -1.023 -0.899 1.660 sum -1.465 11.719 23.027 25.879 Atomic orbital electron populations 1.22155 0.94461 1.02554 1.02024 1.20766 0.94615 0.95784 0.83275 0.91457 1.46121 1.66682 1.14706 1.09247 1.21698 0.76801 0.87472 0.85810 1.90641 1.51716 1.17492 1.85651 1.21333 1.05246 0.91794 0.83307 1.46452 1.13356 1.43629 1.30734 1.21901 0.87101 0.98377 0.94060 1.22212 0.99284 0.95899 1.01448 1.21832 0.84544 1.03891 0.91367 1.44964 1.19661 1.42709 1.31682 1.15725 0.82816 0.79688 0.81459 1.90918 1.39883 1.71626 1.50999 1.21735 0.99903 0.96546 0.93726 0.92266 1.21407 1.00918 0.97936 0.93257 1.22030 0.99767 0.97257 0.98062 1.20594 0.95321 0.90002 0.89177 1.44265 1.69990 1.17414 1.01568 1.19477 1.22951 0.92866 1.03792 0.91399 1.25754 0.98833 1.00359 0.99629 1.70172 1.31847 1.40699 1.15297 0.85407 0.78957 0.79491 0.76983 1.19827 1.22248 1.20862 1.21108 0.96291 0.91578 0.88233 0.92972 0.91057 0.91703 0.75347 0.83270 0.87344 0.89738 0.88729 0.92876 0.85158 0.87701 0.89539 0.74620 0.91569 0.91370 0.93641 0.91252 0.93220 0.98356 0.94218 0.95526 0.92570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.05 8.76 71.98 0.63 -3.42 16 2 C 0.16 4.61 2.35 44.99 0.11 4.72 16 3 H 0.07 2.15 7.58 -2.39 -0.02 2.13 16 4 N -0.72 -18.49 5.01 -442.54 -2.22 -20.71 16 5 C 0.50 13.51 7.86 87.66 0.69 14.20 16 6 O -0.58 -19.91 16.09 -3.02 -0.05 -19.95 16 7 C 0.11 2.27 5.80 85.63 0.50 2.77 16 8 N -0.61 -12.67 2.30 -845.68 -1.95 -14.62 16 9 C 0.11 1.29 6.49 86.48 0.56 1.86 16 10 C -0.15 -1.43 6.20 30.76 0.19 -1.24 16 11 C 0.11 0.88 7.20 86.48 0.62 1.51 16 12 N -0.73 -12.89 5.58 -479.83 -2.68 -15.56 16 13 C 0.70 18.46 8.18 179.46 1.47 19.93 16 14 O -0.65 -23.52 16.48 -4.00 -0.07 -23.58 16 15 C -0.10 -3.22 2.28 -10.72 -0.02 -3.25 16 16 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 17 C -0.10 -3.13 4.88 30.63 0.15 -2.98 16 18 C -0.13 -5.00 6.09 30.68 0.19 -4.81 16 19 C 0.17 8.41 5.30 86.37 0.46 8.87 16 20 N -0.61 -29.83 2.99 -699.09 -2.09 -31.93 16 21 C -0.26 -14.05 9.58 84.03 0.81 -13.24 16 22 H 0.07 3.52 7.89 -2.91 -0.02 3.50 16 23 C -0.05 -2.79 4.92 84.86 0.42 -2.37 16 24 N -0.93 -55.01 11.20 21.65 0.24 -54.77 16 25 Si 0.96 44.66 29.59 68.60 2.03 46.69 16 26 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 27 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 28 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 29 C 0.15 5.88 5.26 86.36 0.45 6.34 16 30 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.07 1.80 6.59 -2.39 -0.02 1.79 16 32 H 0.06 1.72 6.23 -2.39 -0.01 1.70 16 33 H 0.41 9.34 7.27 -92.71 -0.67 8.67 16 34 H 0.15 1.74 8.06 -2.39 -0.02 1.72 16 35 H 0.11 2.47 7.28 -2.39 -0.02 2.45 16 36 H 0.08 1.01 8.06 -2.39 -0.02 0.99 16 37 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.05 0.85 8.14 -2.39 -0.02 0.84 16 39 H 0.13 0.33 8.14 -2.39 -0.02 0.31 16 40 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 41 H 0.09 0.39 8.14 -2.38 -0.02 0.37 16 42 H 0.42 6.59 8.88 -92.71 -0.82 5.77 16 43 H 0.07 2.06 6.63 -2.39 -0.02 2.04 16 44 H 0.07 1.94 8.14 -2.38 -0.02 1.92 16 45 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 46 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 47 H 0.05 2.73 6.06 -2.39 -0.01 2.72 16 48 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 49 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 50 H 0.03 1.04 6.06 -2.39 -0.01 1.02 16 51 H 0.06 2.03 6.75 -2.38 -0.02 2.01 16 Total: -1.00 -80.26 392.95 -0.12 -80.38 By element: Atomic # 1 Polarization: 25.73 SS G_CDS: -0.55 Total: 25.18 kcal Atomic # 6 Polarization: 21.66 SS G_CDS: 7.21 Total: 28.88 kcal Atomic # 7 Polarization: -128.90 SS G_CDS: -8.70 Total: -137.59 kcal Atomic # 8 Polarization: -43.42 SS G_CDS: -0.11 Total: -43.54 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -80.26 -0.12 -80.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713276174.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.581 kcal (2) G-P(sol) polarization free energy of solvation -80.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds