Wall clock time and date at job start Tue Mar 31 2020 22:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09006 * 109.47136 * 2 1 4 4 N 1.46501 * 109.46951 * 240.00498 * 2 1 3 5 5 C 1.34777 * 120.00082 * 84.99936 * 4 2 1 6 6 O 1.21283 * 120.00362 * 0.02562 * 5 4 2 7 7 C 1.50703 * 120.00006 * 180.02562 * 5 4 2 8 8 N 1.46510 * 109.46727 * 180.02562 * 7 5 4 9 9 C 1.46380 * 119.32827 * 269.72103 * 8 7 5 10 10 C 1.53502 * 109.01191 * 150.82898 * 9 8 7 11 11 C 1.53238 * 108.42708 * 55.79409 * 10 9 8 12 12 N 1.46383 * 109.15479 * 304.37930 * 11 10 9 13 13 C 1.34133 * 119.32781 * 89.99981 * 8 7 5 14 14 O 1.21583 * 118.69845 * 0.57037 * 13 8 7 15 15 C 1.52993 * 109.47300 * 120.00728 * 2 1 3 16 16 H 1.08999 * 109.52782 * 59.91781 * 15 2 1 17 17 C 1.53035 * 109.49604 * 299.83444 * 15 2 1 18 18 C 1.53081 * 109.65990 * 178.74751 * 17 15 2 19 19 C 1.53190 * 109.29209 * 61.15476 * 18 17 15 20 20 N 1.46921 * 108.89311 * 305.57883 * 19 18 17 21 21 C 1.36940 * 120.63187 * 233.51481 * 20 19 18 22 22 H 1.08001 * 120.00319 * 152.61971 * 21 20 19 23 23 C 1.38813 * 119.99903 * 332.62203 * 21 20 19 24 24 N 1.31624 * 120.00070 * 159.34992 * 23 21 20 25 25 Si 1.86800 * 120.00077 * 339.35529 * 23 21 20 26 26 H 1.48494 * 109.47321 * 92.87851 * 25 23 21 27 27 H 1.48501 * 109.47194 * 212.88430 * 25 23 21 28 28 H 1.48509 * 109.46983 * 332.87654 * 25 23 21 29 29 C 1.46923 * 118.74178 * 53.54201 * 20 19 18 30 30 H 1.09002 * 109.47129 * 59.99466 * 1 2 3 31 31 H 1.08994 * 109.47010 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46663 * 299.99220 * 1 2 3 33 33 H 0.97003 * 120.00532 * 265.00230 * 4 2 1 34 34 H 1.08995 * 109.46801 * 299.99460 * 7 5 4 35 35 H 1.08996 * 109.47260 * 59.99909 * 7 5 4 36 36 H 1.08999 * 109.52789 * 270.87066 * 9 8 7 37 37 H 1.09007 * 109.51917 * 31.06733 * 9 8 7 38 38 H 1.08999 * 109.80045 * 296.04434 * 10 9 8 39 39 H 1.08998 * 109.72572 * 175.49544 * 10 9 8 40 40 H 1.09000 * 109.52111 * 184.47725 * 11 10 9 41 41 H 1.08998 * 109.53114 * 64.28478 * 11 10 9 42 42 H 0.96998 * 119.33343 * 209.04618 * 12 11 10 43 43 H 1.08998 * 109.46220 * 298.70447 * 17 15 2 44 44 H 1.09000 * 109.46171 * 58.68111 * 17 15 2 45 45 H 1.08992 * 109.38800 * 301.27895 * 18 17 15 46 46 H 1.09002 * 109.61927 * 181.17173 * 18 17 15 47 47 H 1.08999 * 109.58729 * 185.71870 * 19 18 17 48 48 H 1.09004 * 109.58886 * 65.43758 * 19 18 17 49 49 H 0.97001 * 119.99914 * 180.02562 * 24 23 21 50 50 H 1.09004 * 109.59094 * 66.17180 * 29 20 19 51 51 H 1.08996 * 109.58998 * 186.60934 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1963 5 6 2.1470 -0.0181 -2.3572 6 8 1.8591 1.1588 -2.4115 7 6 2.6488 -0.7286 -3.5879 8 7 2.6987 0.2132 -4.7091 9 6 1.5264 0.3623 -5.5729 10 6 1.5011 1.7886 -6.1397 11 6 2.8303 2.0486 -6.8566 12 7 3.9337 1.8040 -5.9263 13 6 3.8197 0.9170 -4.9265 14 8 4.7702 0.7438 -4.1885 15 6 2.0401 -0.7214 1.2491 16 1 1.6761 -1.7488 1.2506 17 6 1.5337 0.0018 2.4991 18 6 2.0160 -0.7349 3.7513 19 6 3.5477 -0.7384 3.7780 20 7 4.0443 -1.3007 2.5148 21 6 4.9308 -2.3444 2.5164 22 1 4.9605 -3.0291 1.6817 23 6 5.7914 -2.5223 3.5909 24 7 6.3413 -3.6987 3.8059 25 14 6.1690 -1.0923 4.7319 26 1 5.2280 -1.1136 5.8804 27 1 7.5624 -1.2121 5.2313 28 1 6.0170 0.1857 3.9909 29 6 3.5721 -0.7217 1.2497 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3632 0.5137 0.8901 33 1 2.2490 -1.6317 -1.1529 34 1 3.6479 -1.1210 -3.3988 35 1 1.9759 -1.5503 -3.8328 36 1 1.5820 -0.3570 -6.3900 37 1 0.6211 0.1859 -4.9919 38 1 1.3762 2.5061 -5.3287 39 1 0.6780 1.8888 -6.8472 40 1 2.8639 3.0833 -7.1977 41 1 2.9199 1.3791 -7.7121 42 1 4.7642 2.2931 -6.0351 43 1 1.9184 1.0216 2.5095 44 1 0.4440 0.0248 2.4890 45 1 1.6502 -1.7614 3.7305 46 1 1.6377 -0.2312 4.6408 47 1 3.8972 -1.3475 4.6116 48 1 3.9135 0.2820 3.8925 49 1 6.9423 -3.8232 4.5571 50 1 3.9377 0.3009 1.1568 51 1 3.9375 -1.3200 0.4151 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713276176.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:07 Heat of formation + Delta-G solvation = -38.858892 kcal Electronic energy + Delta-G solvation = -30864.758513 eV Core-core repulsion = 26799.715436 eV Total energy + Delta-G solvation = -4065.043077 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -40.95341 -39.61407 -38.06767 -36.58904 -35.52015 -34.86761 -33.02744 -31.54859 -31.14815 -30.69353 -29.07897 -28.07174 -25.78419 -25.14012 -23.88548 -23.20202 -21.92905 -21.02347 -20.36290 -19.46638 -19.10656 -17.78980 -17.47251 -17.21080 -16.69642 -16.01950 -15.77171 -15.33452 -15.09698 -14.80165 -14.42621 -14.26867 -14.14443 -14.01352 -13.87631 -13.60132 -13.39146 -13.18762 -12.95503 -12.76721 -12.54038 -12.30897 -12.06198 -11.90139 -11.72049 -11.65317 -11.58445 -11.33886 -11.26315 -10.74801 -10.52301 -10.35459 -10.21195 -10.10586 -10.02819 -9.80272 -9.60155 -9.39772 -9.31103 -8.92729 -8.76542 -8.55027 -6.92506 -5.91521 -3.26619 2.38109 2.72996 3.03307 3.35518 3.38007 3.52617 3.56991 3.60833 4.28785 4.43437 4.57312 4.68234 4.74497 4.81886 4.88652 4.97347 5.08219 5.17329 5.17858 5.20432 5.29498 5.29903 5.35282 5.43557 5.48514 5.62746 5.65304 5.72005 5.90113 5.95570 6.00113 6.03941 6.11338 6.18416 6.28330 6.32588 6.35779 6.43350 6.57179 6.63007 6.69060 6.76331 6.78502 6.87949 7.02178 7.61644 7.62994 8.00078 8.33086 8.35846 8.46920 8.98199 9.76267 10.14675 11.24548 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.015912 B = 0.002824 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.264002 B = 9913.152960 C =10964.310612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.149 3.851 3 H 0.084 0.916 4 N -0.719 5.719 5 C 0.499 3.501 6 O -0.537 6.537 7 C 0.110 3.890 8 N -0.605 5.605 9 C 0.117 3.883 10 C -0.153 4.153 11 C 0.111 3.889 12 N -0.738 5.738 13 C 0.715 3.285 14 O -0.590 6.590 15 C -0.112 4.112 16 H 0.076 0.924 17 C -0.102 4.102 18 C -0.134 4.134 19 C 0.124 3.876 20 N -0.606 5.606 21 C -0.258 4.258 22 H 0.085 0.915 23 C 0.023 3.977 24 N -0.910 5.910 25 Si 0.883 3.117 26 H -0.289 1.289 27 H -0.304 1.304 28 H -0.271 1.271 29 C 0.158 3.842 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.402 0.598 34 H 0.119 0.881 35 H 0.107 0.893 36 H 0.066 0.934 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.094 0.906 40 H 0.081 0.919 41 H 0.063 0.937 42 H 0.414 0.586 43 H 0.056 0.944 44 H 0.056 0.944 45 H 0.064 0.936 46 H 0.054 0.946 47 H 0.071 0.929 48 H 0.023 0.977 49 H 0.262 0.738 50 H 0.021 0.979 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.473 8.503 -20.793 27.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.044 3.956 3 H 0.102 0.898 4 N -0.371 5.371 5 C 0.283 3.717 6 O -0.414 6.414 7 C -0.017 4.017 8 N -0.342 5.342 9 C -0.006 4.006 10 C -0.192 4.192 11 C -0.014 4.014 12 N -0.396 5.396 13 C 0.416 3.584 14 O -0.467 6.467 15 C -0.133 4.133 16 H 0.095 0.905 17 C -0.140 4.140 18 C -0.173 4.173 19 C -0.002 4.002 20 N -0.329 5.329 21 C -0.386 4.386 22 H 0.103 0.897 23 C -0.176 4.176 24 N -0.553 5.553 25 Si 0.713 3.287 26 H -0.217 1.217 27 H -0.232 1.232 28 H -0.196 1.196 29 C 0.031 3.969 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.237 0.763 34 H 0.137 0.863 35 H 0.125 0.875 36 H 0.084 0.916 37 H 0.099 0.901 38 H 0.101 0.899 39 H 0.113 0.887 40 H 0.100 0.900 41 H 0.081 0.919 42 H 0.252 0.748 43 H 0.075 0.925 44 H 0.075 0.925 45 H 0.082 0.918 46 H 0.072 0.928 47 H 0.089 0.911 48 H 0.041 0.959 49 H 0.072 0.928 50 H 0.039 0.961 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -15.201 9.056 -20.352 26.968 hybrid contribution 0.574 0.549 0.700 1.059 sum -14.627 9.605 -19.652 26.314 Atomic orbital electron populations 1.22184 0.95718 1.01843 1.02011 1.20985 0.93377 0.97482 0.83709 0.89803 1.46068 1.67199 1.14286 1.09555 1.21128 0.77597 0.87864 0.85076 1.90665 1.49844 1.15784 1.85075 1.21217 1.05091 0.91063 0.84372 1.46287 1.13132 1.44204 1.30593 1.21599 0.88602 0.96691 0.93693 1.22230 0.97752 0.97518 1.01672 1.21507 0.86214 1.01809 0.91842 1.44890 1.18384 1.44412 1.31956 1.15351 0.82818 0.79119 0.81123 1.91003 1.37790 1.69512 1.48443 1.21952 0.99176 0.99569 0.92563 0.90536 1.21454 0.99240 0.98951 0.94397 1.22000 0.98488 1.00428 0.96378 1.21340 0.91902 0.96824 0.90131 1.44345 1.50473 1.38623 0.99435 1.18906 1.11175 1.01641 1.06861 0.89715 1.25265 0.97479 0.96573 0.98261 1.69835 1.33792 1.21188 1.30464 0.86953 0.76270 0.84804 0.80628 1.21687 1.23226 1.19602 1.20895 0.90091 0.96573 0.89298 0.92786 0.92596 0.91450 0.76349 0.86288 0.87524 0.91583 0.90057 0.89861 0.88740 0.90028 0.91855 0.74839 0.92528 0.92539 0.91767 0.92764 0.91076 0.95915 0.92824 0.96081 0.92020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.86 9.14 37.16 0.34 -1.52 16 2 C 0.15 2.07 2.16 -67.93 -0.15 1.92 16 3 H 0.08 1.36 7.58 -51.93 -0.39 0.97 16 4 N -0.72 -9.13 4.47 -53.80 -0.24 -9.37 16 5 C 0.50 6.85 7.86 -10.98 -0.09 6.76 16 6 O -0.54 -9.26 16.09 5.55 0.09 -9.17 16 7 C 0.11 1.20 5.80 -5.19 -0.03 1.17 16 8 N -0.61 -6.80 2.30 -180.98 -0.42 -7.21 16 9 C 0.12 0.85 6.50 -3.85 -0.03 0.82 16 10 C -0.15 -0.93 6.22 -26.35 -0.16 -1.10 16 11 C 0.11 0.65 7.20 -3.98 -0.03 0.62 16 12 N -0.74 -7.26 5.59 -65.53 -0.37 -7.63 16 13 C 0.71 9.89 8.17 -88.06 -0.72 9.17 16 14 O -0.59 -10.92 16.49 5.29 0.09 -10.84 16 15 C -0.11 -1.76 1.98 -90.50 -0.18 -1.94 16 16 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 17 C -0.10 -1.56 4.85 -26.67 -0.13 -1.69 16 18 C -0.13 -2.35 6.09 -26.59 -0.16 -2.51 16 19 C 0.12 2.75 4.20 -3.71 -0.02 2.73 16 20 N -0.61 -14.57 2.77 -172.32 -0.48 -15.04 16 21 C -0.26 -7.27 10.03 -15.06 -0.15 -7.42 16 22 H 0.09 2.52 8.06 -52.49 -0.42 2.10 16 23 C 0.02 0.67 5.23 -17.43 -0.09 0.58 16 24 N -0.91 -28.22 13.97 55.49 0.78 -27.44 16 25 Si 0.88 23.06 24.34 -169.99 -4.14 18.92 16 26 H -0.29 -7.24 6.62 56.52 0.37 -6.86 16 27 H -0.30 -8.08 7.11 56.52 0.40 -7.67 16 28 H -0.27 -7.06 6.64 56.52 0.38 -6.69 16 29 C 0.16 3.16 5.55 -3.71 -0.02 3.14 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.74 6.41 -51.93 -0.33 0.41 16 33 H 0.40 4.39 8.42 -40.82 -0.34 4.04 16 34 H 0.12 1.43 7.29 -51.93 -0.38 1.05 16 35 H 0.11 0.72 8.05 -51.93 -0.42 0.30 16 36 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 37 H 0.08 0.55 8.07 -51.92 -0.42 0.14 16 38 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 42 H 0.41 3.67 8.88 -40.82 -0.36 3.30 16 43 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.06 0.73 6.37 -51.93 -0.33 0.40 16 45 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 46 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 47 H 0.07 1.73 4.50 -51.93 -0.23 1.50 16 48 H 0.02 0.51 7.07 -51.93 -0.37 0.15 16 49 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 50 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 51 H 0.06 1.23 7.44 -51.93 -0.39 0.84 16 LS Contribution 391.50 15.07 5.90 5.90 Total: -1.00 -38.03 391.50 -9.05 -47.08 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -8.65 Total: 4.07 kcal Atomic # 6 Polarization: 12.34 SS G_CDS: -1.61 Total: 10.73 kcal Atomic # 7 Polarization: -65.97 SS G_CDS: -0.73 Total: -66.70 kcal Atomic # 8 Polarization: -20.18 SS G_CDS: 0.18 Total: -20.01 kcal Atomic # 14 Polarization: 23.06 SS G_CDS: -4.14 Total: 18.92 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -38.03 -9.05 -47.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713276176.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.219 kcal (2) G-P(sol) polarization free energy of solvation -38.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds