Wall clock time and date at job start Tue Mar 31 2020 22:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09006 * 109.47136 * 2 1 4 4 N 1.46501 * 109.46951 * 240.00498 * 2 1 3 5 5 C 1.34777 * 120.00082 * 84.99936 * 4 2 1 6 6 O 1.21283 * 120.00362 * 0.02562 * 5 4 2 7 7 C 1.50703 * 120.00006 * 180.02562 * 5 4 2 8 8 N 1.46510 * 109.46727 * 180.02562 * 7 5 4 9 9 C 1.46380 * 119.32827 * 269.72103 * 8 7 5 10 10 C 1.53502 * 109.01191 * 150.82898 * 9 8 7 11 11 C 1.53238 * 108.42708 * 55.79409 * 10 9 8 12 12 N 1.46383 * 109.15479 * 304.37930 * 11 10 9 13 13 C 1.34133 * 119.32781 * 89.99981 * 8 7 5 14 14 O 1.21583 * 118.69845 * 0.57037 * 13 8 7 15 15 C 1.52993 * 109.47300 * 120.00728 * 2 1 3 16 16 H 1.08999 * 109.52782 * 59.91781 * 15 2 1 17 17 C 1.53035 * 109.49604 * 299.83444 * 15 2 1 18 18 C 1.53081 * 109.65990 * 178.74751 * 17 15 2 19 19 C 1.53190 * 109.29209 * 61.15476 * 18 17 15 20 20 N 1.46921 * 108.89311 * 305.57883 * 19 18 17 21 21 C 1.36940 * 120.63187 * 233.51481 * 20 19 18 22 22 H 1.08001 * 120.00319 * 152.61971 * 21 20 19 23 23 C 1.38813 * 119.99903 * 332.62203 * 21 20 19 24 24 N 1.31624 * 120.00070 * 159.34992 * 23 21 20 25 25 Si 1.86800 * 120.00077 * 339.35529 * 23 21 20 26 26 H 1.48494 * 109.47321 * 92.87851 * 25 23 21 27 27 H 1.48501 * 109.47194 * 212.88430 * 25 23 21 28 28 H 1.48509 * 109.46983 * 332.87654 * 25 23 21 29 29 C 1.46923 * 118.74178 * 53.54201 * 20 19 18 30 30 H 1.09002 * 109.47129 * 59.99466 * 1 2 3 31 31 H 1.08994 * 109.47010 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46663 * 299.99220 * 1 2 3 33 33 H 0.97003 * 120.00532 * 265.00230 * 4 2 1 34 34 H 1.08995 * 109.46801 * 299.99460 * 7 5 4 35 35 H 1.08996 * 109.47260 * 59.99909 * 7 5 4 36 36 H 1.08999 * 109.52789 * 270.87066 * 9 8 7 37 37 H 1.09007 * 109.51917 * 31.06733 * 9 8 7 38 38 H 1.08999 * 109.80045 * 296.04434 * 10 9 8 39 39 H 1.08998 * 109.72572 * 175.49544 * 10 9 8 40 40 H 1.09000 * 109.52111 * 184.47725 * 11 10 9 41 41 H 1.08998 * 109.53114 * 64.28478 * 11 10 9 42 42 H 0.96998 * 119.33343 * 209.04618 * 12 11 10 43 43 H 1.08998 * 109.46220 * 298.70447 * 17 15 2 44 44 H 1.09000 * 109.46171 * 58.68111 * 17 15 2 45 45 H 1.08992 * 109.38800 * 301.27895 * 18 17 15 46 46 H 1.09002 * 109.61927 * 181.17173 * 18 17 15 47 47 H 1.08999 * 109.58729 * 185.71870 * 19 18 17 48 48 H 1.09004 * 109.58886 * 65.43758 * 19 18 17 49 49 H 0.97001 * 119.99914 * 180.02562 * 24 23 21 50 50 H 1.09004 * 109.59094 * 66.17180 * 29 20 19 51 51 H 1.08996 * 109.58998 * 186.60934 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1963 5 6 2.1470 -0.0181 -2.3572 6 8 1.8591 1.1588 -2.4115 7 6 2.6488 -0.7286 -3.5879 8 7 2.6987 0.2132 -4.7091 9 6 1.5264 0.3623 -5.5729 10 6 1.5011 1.7886 -6.1397 11 6 2.8303 2.0486 -6.8566 12 7 3.9337 1.8040 -5.9263 13 6 3.8197 0.9170 -4.9265 14 8 4.7702 0.7438 -4.1885 15 6 2.0401 -0.7214 1.2491 16 1 1.6761 -1.7488 1.2506 17 6 1.5337 0.0018 2.4991 18 6 2.0160 -0.7349 3.7513 19 6 3.5477 -0.7384 3.7780 20 7 4.0443 -1.3007 2.5148 21 6 4.9308 -2.3444 2.5164 22 1 4.9605 -3.0291 1.6817 23 6 5.7914 -2.5223 3.5909 24 7 6.3413 -3.6987 3.8059 25 14 6.1690 -1.0923 4.7319 26 1 5.2280 -1.1136 5.8804 27 1 7.5624 -1.2121 5.2313 28 1 6.0170 0.1857 3.9909 29 6 3.5721 -0.7217 1.2497 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3632 0.5137 0.8901 33 1 2.2490 -1.6317 -1.1529 34 1 3.6479 -1.1210 -3.3988 35 1 1.9759 -1.5503 -3.8328 36 1 1.5820 -0.3570 -6.3900 37 1 0.6211 0.1859 -4.9919 38 1 1.3762 2.5061 -5.3287 39 1 0.6780 1.8888 -6.8472 40 1 2.8639 3.0833 -7.1977 41 1 2.9199 1.3791 -7.7121 42 1 4.7642 2.2931 -6.0351 43 1 1.9184 1.0216 2.5095 44 1 0.4440 0.0248 2.4890 45 1 1.6502 -1.7614 3.7305 46 1 1.6377 -0.2312 4.6408 47 1 3.8972 -1.3475 4.6116 48 1 3.9135 0.2820 3.8925 49 1 6.9423 -3.8232 4.5571 50 1 3.9377 0.3009 1.1568 51 1 3.9375 -1.3200 0.4151 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713276176.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:06 Heat of formation + Delta-G solvation = -68.161823 kcal Electronic energy + Delta-G solvation = -30866.029184 eV Core-core repulsion = 26799.715436 eV Total energy + Delta-G solvation = -4066.313747 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.85996 -40.76275 -39.50089 -37.49142 -36.85025 -35.77467 -34.72525 -33.10388 -32.37003 -31.92899 -30.39495 -28.94993 -27.04853 -26.41641 -25.21323 -24.05091 -23.52899 -22.41774 -21.48170 -20.83890 -19.92587 -18.81437 -18.61234 -18.30954 -18.17027 -17.31212 -17.09791 -16.58370 -16.22331 -15.85645 -15.65330 -15.58953 -15.29129 -15.17326 -14.91351 -14.83083 -14.68405 -14.30509 -14.22585 -14.17849 -13.88598 -13.64347 -13.36189 -13.24892 -12.82547 -12.67089 -12.59216 -12.53632 -12.33435 -12.23648 -12.17552 -11.91590 -11.67209 -11.55304 -11.34049 -11.26909 -11.23244 -11.01858 -10.67922 -10.16334 -10.02140 -9.59477 -8.93885 -8.18738 -5.49363 1.24879 1.37813 1.46298 1.55129 1.66477 2.06405 2.38619 2.40998 2.91501 3.03917 3.27537 3.74650 3.78691 3.83477 3.94230 3.98040 4.02857 4.08119 4.20311 4.28898 4.34983 4.42933 4.43632 4.48513 4.52769 4.64385 4.67409 4.70515 4.76478 4.77476 4.85085 4.89736 4.97913 4.99154 5.07237 5.18033 5.18493 5.21783 5.25979 5.34603 5.41767 5.53272 5.57397 5.63706 5.85152 6.07706 6.10855 6.58867 6.78349 6.90198 7.27887 7.52259 7.60741 8.02039 9.01148 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.015912 B = 0.002824 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.264002 B = 9913.152960 C =10964.310612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.156 3.844 3 H 0.058 0.942 4 N -0.715 5.715 5 C 0.496 3.504 6 O -0.576 6.576 7 C 0.110 3.890 8 N -0.606 5.606 9 C 0.108 3.892 10 C -0.150 4.150 11 C 0.106 3.894 12 N -0.735 5.735 13 C 0.701 3.299 14 O -0.653 6.653 15 C -0.096 4.096 16 H 0.082 0.918 17 C -0.100 4.100 18 C -0.125 4.125 19 C 0.114 3.886 20 N -0.619 5.619 21 C -0.245 4.245 22 H 0.057 0.943 23 C -0.033 4.033 24 N -0.955 5.955 25 Si 0.942 3.058 26 H -0.270 1.270 27 H -0.311 1.311 28 H -0.273 1.273 29 C 0.155 3.845 30 H 0.048 0.952 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.411 0.589 34 H 0.102 0.898 35 H 0.154 0.846 36 H 0.095 0.905 37 H 0.087 0.913 38 H 0.052 0.948 39 H 0.132 0.868 40 H 0.104 0.896 41 H 0.087 0.913 42 H 0.415 0.585 43 H 0.055 0.945 44 H 0.094 0.906 45 H 0.061 0.939 46 H 0.083 0.917 47 H 0.049 0.951 48 H 0.022 0.978 49 H 0.261 0.739 50 H 0.007 0.993 51 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.854 9.433 -22.067 30.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.051 3.949 3 H 0.076 0.924 4 N -0.367 5.367 5 C 0.282 3.718 6 O -0.455 6.455 7 C -0.017 4.017 8 N -0.342 5.342 9 C -0.013 4.013 10 C -0.188 4.188 11 C -0.017 4.017 12 N -0.391 5.391 13 C 0.401 3.599 14 O -0.536 6.536 15 C -0.116 4.116 16 H 0.100 0.900 17 C -0.138 4.138 18 C -0.164 4.164 19 C -0.010 4.010 20 N -0.343 5.343 21 C -0.375 4.375 22 H 0.075 0.925 23 C -0.228 4.228 24 N -0.601 5.601 25 Si 0.772 3.228 26 H -0.197 1.197 27 H -0.240 1.240 28 H -0.198 1.198 29 C 0.030 3.970 30 H 0.067 0.933 31 H 0.090 0.910 32 H 0.098 0.902 33 H 0.247 0.753 34 H 0.121 0.879 35 H 0.171 0.829 36 H 0.113 0.887 37 H 0.106 0.894 38 H 0.071 0.929 39 H 0.150 0.850 40 H 0.122 0.878 41 H 0.105 0.895 42 H 0.253 0.747 43 H 0.074 0.926 44 H 0.113 0.887 45 H 0.079 0.921 46 H 0.101 0.899 47 H 0.067 0.933 48 H 0.040 0.960 49 H 0.070 0.930 50 H 0.025 0.975 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -18.668 10.011 -21.673 30.305 hybrid contribution 1.605 0.276 0.978 1.900 sum -17.063 10.287 -20.695 28.727 Atomic orbital electron populations 1.22086 0.93152 1.02990 1.02413 1.20838 0.95166 0.95759 0.83158 0.92396 1.46059 1.66775 1.14700 1.09153 1.21654 0.76753 0.87463 0.85900 1.90643 1.51702 1.17433 1.85732 1.21342 1.05073 0.91883 0.83439 1.46458 1.13533 1.43448 1.30741 1.21961 0.87102 0.98246 0.94002 1.22254 0.99154 0.95934 1.01469 1.21846 0.84628 1.03845 0.91396 1.44986 1.19653 1.42991 1.31503 1.15766 0.82881 0.79763 0.81462 1.90945 1.40092 1.71610 1.50915 1.21755 0.95322 1.00388 0.94180 0.89995 1.21484 1.01491 0.98224 0.92565 1.21909 0.94459 1.01139 0.98905 1.21439 0.95473 0.95812 0.88321 1.44491 1.50199 1.38056 1.01566 1.18897 1.11345 1.01768 1.05453 0.92513 1.25840 0.98054 0.98460 1.00440 1.69945 1.35405 1.22956 1.31794 0.85982 0.75783 0.81552 0.79484 1.19653 1.24029 1.19794 1.21009 0.93421 0.95113 0.87436 0.93256 0.90988 0.90196 0.75263 0.87950 0.82865 0.88669 0.89425 0.92910 0.85013 0.87802 0.89504 0.74733 0.92631 0.88741 0.92052 0.89855 0.93328 0.95994 0.92963 0.97456 0.92854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.01 9.14 71.98 0.66 -2.35 16 2 C 0.16 4.10 2.16 44.99 0.10 4.20 16 3 H 0.06 1.86 7.58 -2.38 -0.02 1.85 16 4 N -0.71 -17.64 4.47 -442.52 -1.98 -19.62 16 5 C 0.50 13.53 7.86 87.66 0.69 14.22 16 6 O -0.58 -20.04 16.09 -3.04 -0.05 -20.09 16 7 C 0.11 2.33 5.80 85.63 0.50 2.82 16 8 N -0.61 -13.17 2.30 -845.14 -1.95 -15.11 16 9 C 0.11 1.29 6.50 86.57 0.56 1.85 16 10 C -0.15 -1.45 6.22 30.84 0.19 -1.26 16 11 C 0.11 0.97 7.20 86.48 0.62 1.59 16 12 N -0.73 -14.15 5.59 -479.86 -2.68 -16.83 16 13 C 0.70 19.74 8.17 179.45 1.47 21.21 16 14 O -0.65 -25.58 16.49 -3.98 -0.07 -25.64 16 15 C -0.10 -2.85 1.98 -10.72 -0.02 -2.88 16 16 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 17 C -0.10 -2.73 4.85 30.63 0.15 -2.58 16 18 C -0.13 -4.04 6.09 30.68 0.19 -3.86 16 19 C 0.11 4.96 4.20 86.36 0.36 5.32 16 20 N -0.62 -29.94 2.77 -699.10 -1.94 -31.88 16 21 C -0.25 -14.20 10.03 84.03 0.84 -13.35 16 22 H 0.06 3.54 8.06 -2.91 -0.02 3.51 16 23 C -0.03 -1.99 5.23 84.86 0.44 -1.55 16 24 N -0.95 -61.03 13.97 21.65 0.30 -60.73 16 25 Si 0.94 48.65 24.34 68.60 1.67 50.32 16 26 H -0.27 -12.97 6.62 99.48 0.66 -12.32 16 27 H -0.31 -16.31 7.11 99.48 0.71 -15.60 16 28 H -0.27 -13.96 6.64 99.48 0.66 -13.30 16 29 C 0.16 6.27 5.55 86.37 0.48 6.75 16 30 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.08 1.43 6.41 -2.39 -0.02 1.42 16 33 H 0.41 8.63 8.42 -92.71 -0.78 7.85 16 34 H 0.10 2.56 7.29 -2.39 -0.02 2.54 16 35 H 0.15 1.69 8.05 -2.39 -0.02 1.67 16 36 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.09 0.95 8.07 -2.38 -0.02 0.94 16 38 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.13 0.30 8.14 -2.39 -0.02 0.28 16 40 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 41 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 42 H 0.42 7.45 8.88 -92.71 -0.82 6.63 16 43 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 44 H 0.09 1.96 6.37 -2.39 -0.02 1.95 16 45 H 0.06 2.03 8.14 -2.39 -0.02 2.02 16 46 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 47 H 0.05 2.32 4.50 -2.39 -0.01 2.31 16 48 H 0.02 0.96 7.07 -2.38 -0.02 0.94 16 49 H 0.26 15.90 8.31 -92.71 -0.77 15.13 16 50 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 51 H 0.05 2.19 7.44 -2.39 -0.02 2.17 16 Total: -1.00 -88.09 391.50 -0.21 -88.30 By element: Atomic # 1 Polarization: 21.90 SS G_CDS: -0.76 Total: 21.14 kcal Atomic # 6 Polarization: 22.91 SS G_CDS: 7.23 Total: 30.14 kcal Atomic # 7 Polarization: -135.93 SS G_CDS: -8.24 Total: -144.17 kcal Atomic # 8 Polarization: -45.62 SS G_CDS: -0.11 Total: -45.73 kcal Atomic # 14 Polarization: 48.65 SS G_CDS: 1.67 Total: 50.32 kcal Total: -88.09 -0.21 -88.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713276176.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.143 kcal (2) G-P(sol) polarization free energy of solvation -88.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds