Wall clock time and date at job start Tue Mar 31 2020 20:39:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46006 * 118.53949 * 2 1 4 4 C 1.52994 * 110.03816 * 161.86440 * 3 2 1 5 5 N 1.47183 * 108.71989 * 50.30930 * 4 3 2 6 6 C 1.46902 * 111.00325 * 167.62002 * 5 4 3 7 7 C 1.50698 * 109.47358 * 188.93546 * 6 5 4 8 8 O 1.21285 * 119.99797 * 359.97438 * 7 6 5 9 9 N 1.34772 * 120.00121 * 179.97438 * 7 6 5 10 10 C 1.46504 * 120.00213 * 184.97370 * 9 7 6 11 11 C 1.53005 * 109.47091 * 295.81894 * 10 9 7 12 12 C 1.53002 * 109.46797 * 55.81527 * 10 9 7 13 13 N 1.46502 * 109.47116 * 59.99983 * 12 10 9 14 14 C 1.36934 * 119.99728 * 179.97438 * 13 12 10 15 15 H 1.07998 * 120.00622 * 0.02562 * 14 13 12 16 16 C 1.38817 * 119.99876 * 180.02562 * 14 13 12 17 17 N 1.31616 * 119.99758 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00016 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47107 * 359.97438 * 18 16 14 20 20 H 1.48491 * 109.47254 * 120.00133 * 18 16 14 21 21 H 1.48503 * 109.46657 * 239.99774 * 18 16 14 22 22 C 1.52995 * 109.47041 * 175.81648 * 10 9 7 23 23 C 1.53007 * 117.49719 * 132.72717 * 22 10 9 24 24 C 1.53000 * 117.50198 * 64.06469 * 22 10 9 25 25 C 1.46902 * 110.17076 * 290.98322 * 5 4 3 26 26 C 1.33715 * 118.53297 * 180.02562 * 2 1 3 27 27 O 1.21281 * 118.62866 * 1.66125 * 26 2 1 28 28 H 1.08996 * 109.47076 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46581 * 299.97760 * 1 2 3 30 30 H 1.08992 * 109.46912 * 59.97224 * 1 2 3 31 31 H 1.08995 * 109.37795 * 282.04158 * 3 2 1 32 32 H 1.09004 * 109.37493 * 41.80743 * 3 2 1 33 33 H 1.08996 * 109.61172 * 290.52732 * 4 3 2 34 34 H 1.09006 * 109.58393 * 170.07097 * 4 3 2 35 35 H 1.09002 * 109.46886 * 68.93110 * 6 5 4 36 36 H 1.09004 * 109.46909 * 308.93822 * 6 5 4 37 37 H 0.96998 * 119.99952 * 4.70629 * 9 7 6 38 38 H 1.08998 * 109.46989 * 59.99333 * 11 10 9 39 39 H 1.09001 * 109.46643 * 179.97438 * 11 10 9 40 40 H 1.08998 * 109.46471 * 299.99450 * 11 10 9 41 41 H 1.08999 * 109.47197 * 180.02562 * 12 10 9 42 42 H 1.09004 * 109.47160 * 299.99857 * 12 10 9 43 43 H 0.96995 * 119.99876 * 359.97438 * 13 12 10 44 44 H 0.96995 * 120.00145 * 179.97438 * 17 16 14 45 45 H 1.09003 * 115.54688 * 278.38796 * 22 10 9 46 46 H 1.08998 * 117.49590 * 359.97438 * 23 22 10 47 47 H 1.09000 * 117.49243 * 145.01881 * 23 22 10 48 48 H 1.09000 * 117.49623 * 214.97353 * 24 22 10 49 49 H 1.08999 * 117.49685 * 359.97438 * 24 22 10 50 50 H 1.09000 * 109.38497 * 170.45478 * 25 5 4 51 51 H 1.08995 * 109.39001 * 290.24338 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1626 1.2826 0.0000 4 6 3.6130 1.0906 0.4474 5 7 4.2092 -0.0015 -0.3389 6 6 5.6676 -0.0389 -0.1667 7 6 6.2642 -1.0168 -1.1458 8 8 5.5451 -1.6233 -1.9114 9 7 7.5966 -1.2175 -1.1707 10 6 8.1879 -2.0844 -2.1931 11 6 7.6835 -3.5162 -2.0016 12 6 7.7854 -1.5833 -3.5815 13 7 8.2683 -0.2123 -3.7649 14 6 8.0252 0.4477 -4.9398 15 1 7.4772 -0.0421 -5.7311 16 6 8.4832 1.7466 -5.1137 17 7 9.1506 2.3437 -4.1492 18 14 8.1511 2.6473 -6.7162 19 1 7.3865 1.7629 -7.6318 20 1 7.3625 3.8748 -6.4398 21 1 9.4408 3.0199 -7.3509 22 6 9.7122 -2.0590 -2.0638 23 6 10.4452 -3.4019 -2.0827 24 6 10.3213 -2.6154 -0.7752 25 6 3.6018 -1.2855 0.0357 26 6 2.1037 -1.1747 -0.0005 27 8 1.4464 -2.1935 -0.0318 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5135 0.8903 30 1 -0.3633 0.5142 -0.8897 31 1 2.1469 1.7028 -1.0056 32 1 1.6620 1.9665 0.6855 33 1 3.6383 0.8345 1.5065 34 1 4.1725 2.0107 0.2781 35 1 5.9054 -0.3517 0.8500 36 1 6.0803 0.9537 -0.3473 37 1 8.1646 -0.7848 -0.5141 38 1 6.5976 -3.5341 -2.0936 39 1 8.1232 -4.1610 -2.7625 40 1 7.9704 -3.8730 -1.0124 41 1 8.2249 -2.2285 -4.3422 42 1 6.6994 -1.6014 -3.6736 43 1 8.7601 0.2277 -3.0541 44 1 9.4709 3.2511 -4.2709 45 1 10.2093 -1.2077 -2.5288 46 1 9.8414 -4.3034 -2.1868 47 1 11.4248 -3.4338 -2.5597 48 1 11.2194 -2.1304 -0.3928 49 1 9.6360 -2.9991 -0.0194 50 1 3.9246 -2.0563 -0.6642 51 1 3.9189 -1.5557 1.0429 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715115377.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:38 Heat of formation + Delta-G solvation = -0.653996 kcal Electronic energy + Delta-G solvation = -31190.626313 eV Core-core repulsion = 27127.239925 eV Total energy + Delta-G solvation = -4063.386388 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.68888 -39.93641 -38.09402 -36.91534 -35.30486 -34.54799 -33.41835 -31.40805 -30.32877 -29.83187 -29.07684 -26.54891 -25.77695 -24.80290 -23.60967 -22.67748 -22.31169 -22.04010 -20.03997 -18.83469 -18.70395 -17.50753 -17.11948 -16.90014 -16.66863 -16.13917 -15.74060 -15.19809 -15.16250 -14.74849 -14.53693 -14.38375 -14.26427 -13.83094 -13.51117 -13.22034 -13.17491 -12.82141 -12.68399 -12.47300 -12.40587 -12.21574 -12.08488 -12.01828 -11.90569 -11.69732 -11.47987 -11.27659 -11.01393 -10.80594 -10.78677 -10.70442 -10.16734 -10.03246 -9.92229 -9.78867 -9.63373 -9.26948 -8.86905 -8.75782 -8.60751 -8.43486 -6.79718 -5.71116 -2.96283 2.54587 2.85197 3.00417 3.21886 3.46961 3.53449 3.55804 3.74029 4.12752 4.39620 4.53180 4.65726 4.78497 4.83822 4.92436 5.02907 5.10432 5.13341 5.18556 5.20567 5.21483 5.29522 5.35585 5.39662 5.49232 5.49826 5.62383 5.65367 5.67432 5.71498 5.78078 5.81226 5.97940 6.07766 6.20147 6.23238 6.26617 6.30739 6.46391 6.58388 6.61732 6.70818 6.72930 6.97468 7.18132 7.27253 7.79133 7.95787 8.05817 8.48895 8.68748 9.60670 10.18789 10.55010 11.52296 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.008933 B = 0.003853 C = 0.002976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3133.570024 B = 7264.789260 C = 9406.928212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.609 5.609 3 C 0.120 3.880 4 C 0.034 3.966 5 N -0.510 5.510 6 C 0.036 3.964 7 C 0.523 3.477 8 O -0.517 6.517 9 N -0.712 5.712 10 C 0.204 3.796 11 C -0.162 4.162 12 C 0.142 3.858 13 N -0.725 5.725 14 C -0.225 4.225 15 H 0.068 0.932 16 C -0.016 4.016 17 N -0.938 5.938 18 Si 0.903 3.097 19 H -0.281 1.281 20 H -0.293 1.293 21 H -0.294 1.294 22 C -0.148 4.148 23 C -0.173 4.173 24 C -0.184 4.184 25 C 0.036 3.964 26 C 0.528 3.472 27 O -0.554 6.554 28 H 0.089 0.911 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.045 0.955 34 H 0.102 0.898 35 H 0.061 0.939 36 H 0.114 0.886 37 H 0.395 0.605 38 H 0.076 0.924 39 H 0.064 0.936 40 H 0.050 0.950 41 H 0.022 0.978 42 H 0.050 0.950 43 H 0.381 0.619 44 H 0.251 0.749 45 H 0.122 0.878 46 H 0.099 0.901 47 H 0.092 0.908 48 H 0.092 0.908 49 H 0.091 0.909 50 H 0.136 0.864 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.783 -4.724 15.675 17.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.343 5.343 3 C -0.003 4.003 4 C -0.094 4.094 5 N -0.235 5.235 6 C -0.095 4.095 7 C 0.308 3.692 8 O -0.392 6.392 9 N -0.363 5.363 10 C 0.119 3.881 11 C -0.220 4.220 12 C 0.014 3.986 13 N -0.369 5.369 14 C -0.356 4.356 15 H 0.086 0.914 16 C -0.212 4.212 17 N -0.588 5.588 18 Si 0.735 3.265 19 H -0.206 1.206 20 H -0.220 1.220 21 H -0.221 1.221 22 C -0.167 4.167 23 C -0.211 4.211 24 C -0.221 4.221 25 C -0.094 4.094 26 C 0.316 3.684 27 O -0.431 6.431 28 H 0.108 0.892 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.096 0.904 32 H 0.098 0.902 33 H 0.063 0.937 34 H 0.120 0.880 35 H 0.079 0.921 36 H 0.132 0.868 37 H 0.229 0.771 38 H 0.095 0.905 39 H 0.083 0.917 40 H 0.069 0.931 41 H 0.040 0.960 42 H 0.068 0.932 43 H 0.215 0.785 44 H 0.061 0.939 45 H 0.140 0.860 46 H 0.117 0.883 47 H 0.111 0.889 48 H 0.110 0.890 49 H 0.109 0.891 50 H 0.153 0.847 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.824 -5.581 14.402 17.314 hybrid contribution 0.666 1.154 0.437 1.402 sum -7.158 -4.427 14.839 17.060 Atomic orbital electron populations 1.21724 0.79606 1.04480 1.01169 1.47309 1.07290 1.06349 1.73325 1.21513 0.91396 0.84650 1.02729 1.22559 0.94960 0.96440 0.95426 1.62105 1.03253 1.03026 1.55150 1.22077 0.88116 1.01759 0.97569 1.20085 0.82277 0.82452 0.84371 1.90617 1.59989 1.48087 1.40512 1.45873 1.06925 1.50129 1.33396 1.19999 0.89490 0.89460 0.89157 1.22274 1.03431 0.95370 1.00921 1.21085 0.98818 0.87684 0.91021 1.42229 1.66825 1.10422 1.17437 1.19290 1.28043 0.95432 0.92878 0.91370 1.24640 1.01452 0.97171 0.97887 1.69650 1.43406 1.13518 1.32201 0.86151 0.77214 0.79732 0.83395 1.20646 1.22050 1.22093 1.22578 0.93852 0.98960 1.01311 1.23061 1.01852 0.95406 1.00757 1.22944 1.02913 1.04896 0.91325 1.22518 0.90044 0.94615 1.02219 1.20153 0.90385 0.82888 0.74964 1.90693 1.66857 1.34680 1.50894 0.89242 0.92380 0.92127 0.90372 0.90216 0.93706 0.88021 0.92080 0.86816 0.77103 0.90502 0.91707 0.93069 0.96036 0.93196 0.78466 0.93877 0.86027 0.88274 0.88934 0.89001 0.89078 0.84669 0.91804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.70 10.55 59.85 0.63 1.34 16 2 N -0.61 -7.17 3.23 -182.47 -0.59 -7.76 16 3 C 0.12 1.09 6.64 -4.31 -0.03 1.07 16 4 C 0.03 0.32 5.60 -3.67 -0.02 0.30 16 5 N -0.51 -6.50 4.47 -237.54 -1.06 -7.56 16 6 C 0.04 0.43 5.44 -4.98 -0.03 0.40 16 7 C 0.52 8.17 7.00 -10.99 -0.08 8.10 16 8 O -0.52 -9.89 10.54 5.55 0.06 -9.83 16 9 N -0.71 -10.31 4.73 -47.61 -0.23 -10.53 16 10 C 0.20 3.25 0.54 -131.82 -0.07 3.18 16 11 C -0.16 -2.30 7.10 37.16 0.26 -2.04 16 12 C 0.14 3.00 4.90 -4.04 -0.02 2.98 16 13 N -0.72 -18.04 5.04 -59.90 -0.30 -18.34 16 14 C -0.22 -6.38 9.99 -15.06 -0.15 -6.53 16 15 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 16 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 17 N -0.94 -27.73 13.06 55.49 0.72 -27.00 16 18 Si 0.90 22.78 29.55 -169.99 -5.02 17.75 16 19 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 20 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 21 H -0.29 -7.41 7.11 56.52 0.40 -7.00 16 22 C -0.15 -2.18 4.86 -90.62 -0.44 -2.62 16 23 C -0.17 -2.13 9.64 -26.69 -0.26 -2.39 16 24 C -0.18 -2.09 9.72 -26.69 -0.26 -2.35 16 25 C 0.04 0.49 5.14 -5.19 -0.03 0.46 16 26 C 0.53 7.74 7.57 -11.67 -0.09 7.65 16 27 O -0.55 -9.86 16.07 5.56 0.09 -9.77 16 28 H 0.09 1.02 6.67 -51.93 -0.35 0.67 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.08 0.50 8.13 -51.93 -0.42 0.07 16 33 H 0.04 0.35 8.08 -51.93 -0.42 -0.07 16 34 H 0.10 0.80 7.91 -51.93 -0.41 0.39 16 35 H 0.06 0.55 8.05 -51.93 -0.42 0.13 16 36 H 0.11 1.33 7.93 -51.93 -0.41 0.92 16 37 H 0.40 4.82 8.38 -40.82 -0.34 4.48 16 38 H 0.08 1.25 6.31 -51.93 -0.33 0.92 16 39 H 0.06 0.87 6.78 -51.93 -0.35 0.52 16 40 H 0.05 0.63 6.99 -51.93 -0.36 0.27 16 41 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.05 1.19 6.04 -51.93 -0.31 0.87 16 43 H 0.38 9.66 6.62 -40.82 -0.27 9.39 16 44 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 45 H 0.12 2.17 7.08 -51.93 -0.37 1.81 16 46 H 0.10 1.14 5.88 -51.93 -0.31 0.84 16 47 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 48 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 49 H 0.09 0.95 7.35 -51.93 -0.38 0.57 16 50 H 0.14 2.19 6.00 -51.93 -0.31 1.87 16 51 H 0.06 0.73 8.05 -51.93 -0.42 0.31 16 LS Contribution 395.47 15.07 5.96 5.96 Total: -1.00 -35.30 395.47 -9.30 -44.61 By element: Atomic # 1 Polarization: 21.77 SS G_CDS: -8.27 Total: 13.50 kcal Atomic # 6 Polarization: 9.64 SS G_CDS: -0.67 Total: 8.98 kcal Atomic # 7 Polarization: -69.74 SS G_CDS: -1.45 Total: -71.20 kcal Atomic # 8 Polarization: -19.75 SS G_CDS: 0.15 Total: -19.60 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -5.02 Total: 17.75 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -35.30 -9.30 -44.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715115377.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.952 kcal (2) G-P(sol) polarization free energy of solvation -35.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds