Wall clock time and date at job start Tue Mar 31 2020 20:39:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46006 * 118.53949 * 2 1 4 4 C 1.52994 * 110.03816 * 161.86440 * 3 2 1 5 5 N 1.47183 * 108.71989 * 50.30930 * 4 3 2 6 6 C 1.46902 * 111.00325 * 167.62002 * 5 4 3 7 7 C 1.50698 * 109.47358 * 188.93546 * 6 5 4 8 8 O 1.21285 * 119.99797 * 359.97438 * 7 6 5 9 9 N 1.34772 * 120.00121 * 179.97438 * 7 6 5 10 10 C 1.46504 * 120.00213 * 184.97370 * 9 7 6 11 11 C 1.53005 * 109.47091 * 295.81894 * 10 9 7 12 12 C 1.53002 * 109.46797 * 55.81527 * 10 9 7 13 13 N 1.46502 * 109.47116 * 59.99983 * 12 10 9 14 14 C 1.36934 * 119.99728 * 179.97438 * 13 12 10 15 15 H 1.07998 * 120.00622 * 0.02562 * 14 13 12 16 16 C 1.38817 * 119.99876 * 180.02562 * 14 13 12 17 17 N 1.31616 * 119.99758 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00016 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47107 * 359.97438 * 18 16 14 20 20 H 1.48491 * 109.47254 * 120.00133 * 18 16 14 21 21 H 1.48503 * 109.46657 * 239.99774 * 18 16 14 22 22 C 1.52995 * 109.47041 * 175.81648 * 10 9 7 23 23 C 1.53007 * 117.49719 * 132.72717 * 22 10 9 24 24 C 1.53000 * 117.50198 * 64.06469 * 22 10 9 25 25 C 1.46902 * 110.17076 * 290.98322 * 5 4 3 26 26 C 1.33715 * 118.53297 * 180.02562 * 2 1 3 27 27 O 1.21281 * 118.62866 * 1.66125 * 26 2 1 28 28 H 1.08996 * 109.47076 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46581 * 299.97760 * 1 2 3 30 30 H 1.08992 * 109.46912 * 59.97224 * 1 2 3 31 31 H 1.08995 * 109.37795 * 282.04158 * 3 2 1 32 32 H 1.09004 * 109.37493 * 41.80743 * 3 2 1 33 33 H 1.08996 * 109.61172 * 290.52732 * 4 3 2 34 34 H 1.09006 * 109.58393 * 170.07097 * 4 3 2 35 35 H 1.09002 * 109.46886 * 68.93110 * 6 5 4 36 36 H 1.09004 * 109.46909 * 308.93822 * 6 5 4 37 37 H 0.96998 * 119.99952 * 4.70629 * 9 7 6 38 38 H 1.08998 * 109.46989 * 59.99333 * 11 10 9 39 39 H 1.09001 * 109.46643 * 179.97438 * 11 10 9 40 40 H 1.08998 * 109.46471 * 299.99450 * 11 10 9 41 41 H 1.08999 * 109.47197 * 180.02562 * 12 10 9 42 42 H 1.09004 * 109.47160 * 299.99857 * 12 10 9 43 43 H 0.96995 * 119.99876 * 359.97438 * 13 12 10 44 44 H 0.96995 * 120.00145 * 179.97438 * 17 16 14 45 45 H 1.09003 * 115.54688 * 278.38796 * 22 10 9 46 46 H 1.08998 * 117.49590 * 359.97438 * 23 22 10 47 47 H 1.09000 * 117.49243 * 145.01881 * 23 22 10 48 48 H 1.09000 * 117.49623 * 214.97353 * 24 22 10 49 49 H 1.08999 * 117.49685 * 359.97438 * 24 22 10 50 50 H 1.09000 * 109.38497 * 170.45478 * 25 5 4 51 51 H 1.08995 * 109.39001 * 290.24338 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1626 1.2826 0.0000 4 6 3.6130 1.0906 0.4474 5 7 4.2092 -0.0015 -0.3389 6 6 5.6676 -0.0389 -0.1667 7 6 6.2642 -1.0168 -1.1458 8 8 5.5451 -1.6233 -1.9114 9 7 7.5966 -1.2175 -1.1707 10 6 8.1879 -2.0844 -2.1931 11 6 7.6835 -3.5162 -2.0016 12 6 7.7854 -1.5833 -3.5815 13 7 8.2683 -0.2123 -3.7649 14 6 8.0252 0.4477 -4.9398 15 1 7.4772 -0.0421 -5.7311 16 6 8.4832 1.7466 -5.1137 17 7 9.1506 2.3437 -4.1492 18 14 8.1511 2.6473 -6.7162 19 1 7.3865 1.7629 -7.6318 20 1 7.3625 3.8748 -6.4398 21 1 9.4408 3.0199 -7.3509 22 6 9.7122 -2.0590 -2.0638 23 6 10.4452 -3.4019 -2.0827 24 6 10.3213 -2.6154 -0.7752 25 6 3.6018 -1.2855 0.0357 26 6 2.1037 -1.1747 -0.0005 27 8 1.4464 -2.1935 -0.0318 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5135 0.8903 30 1 -0.3633 0.5142 -0.8897 31 1 2.1469 1.7028 -1.0056 32 1 1.6620 1.9665 0.6855 33 1 3.6383 0.8345 1.5065 34 1 4.1725 2.0107 0.2781 35 1 5.9054 -0.3517 0.8500 36 1 6.0803 0.9537 -0.3473 37 1 8.1646 -0.7848 -0.5141 38 1 6.5976 -3.5341 -2.0936 39 1 8.1232 -4.1610 -2.7625 40 1 7.9704 -3.8730 -1.0124 41 1 8.2249 -2.2285 -4.3422 42 1 6.6994 -1.6014 -3.6736 43 1 8.7601 0.2277 -3.0541 44 1 9.4709 3.2511 -4.2709 45 1 10.2093 -1.2077 -2.5288 46 1 9.8414 -4.3034 -2.1868 47 1 11.4248 -3.4338 -2.5597 48 1 11.2194 -2.1304 -0.3928 49 1 9.6360 -2.9991 -0.0194 50 1 3.9246 -2.0563 -0.6642 51 1 3.9189 -1.5557 1.0429 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715115377.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:37 Heat of formation + Delta-G solvation = -27.853640 kcal Electronic energy + Delta-G solvation = -31191.805778 eV Core-core repulsion = 27127.239925 eV Total energy + Delta-G solvation = -4064.565853 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.73366 -41.12677 -39.22826 -37.97287 -36.40061 -36.14098 -34.89968 -33.10147 -31.61614 -30.93622 -30.14953 -27.62719 -27.34072 -25.77407 -24.98166 -24.10956 -23.53654 -23.09672 -21.17937 -20.10124 -19.67621 -19.18760 -18.57142 -17.88537 -17.67639 -17.09891 -16.93640 -16.71724 -16.22927 -16.19661 -15.76132 -15.53454 -15.36278 -15.21014 -14.96349 -14.58661 -14.27602 -14.13384 -13.81670 -13.68841 -13.47906 -13.44866 -13.24944 -13.07178 -13.06114 -12.87568 -12.80806 -12.61489 -12.31811 -12.31272 -12.18167 -12.00605 -11.94920 -11.73713 -11.20824 -11.04879 -11.03252 -10.87854 -10.38258 -9.85049 -9.77445 -9.40572 -8.89363 -7.92888 -5.17726 1.45235 1.45311 1.46051 1.55916 1.82097 1.98312 2.17110 2.56844 2.78000 3.08871 3.39877 3.49266 3.66916 3.79236 3.84413 3.95611 3.99543 4.08593 4.19947 4.21957 4.27530 4.32354 4.36725 4.44719 4.50749 4.55344 4.62160 4.65415 4.70864 4.74227 4.81565 4.90288 4.90593 4.95557 4.98532 5.01747 5.05281 5.18595 5.33863 5.34456 5.35598 5.47844 5.51468 5.67943 5.79034 5.88731 6.30414 6.31023 6.82081 7.01504 7.38124 7.52611 8.12436 8.42746 9.30063 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.008933 B = 0.003853 C = 0.002976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3133.570024 B = 7264.789260 C = 9406.928212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.606 5.606 3 C 0.115 3.885 4 C 0.034 3.966 5 N -0.536 5.536 6 C 0.044 3.956 7 C 0.511 3.489 8 O -0.558 6.558 9 N -0.705 5.705 10 C 0.215 3.785 11 C -0.151 4.151 12 C 0.145 3.855 13 N -0.725 5.725 14 C -0.241 4.241 15 H 0.057 0.943 16 C -0.064 4.064 17 N -0.960 5.960 18 Si 0.963 3.037 19 H -0.278 1.278 20 H -0.291 1.291 21 H -0.290 1.290 22 C -0.173 4.173 23 C -0.169 4.169 24 C -0.152 4.152 25 C 0.046 3.954 26 C 0.517 3.483 27 O -0.599 6.599 28 H 0.066 0.934 29 H 0.090 0.910 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.119 0.881 33 H 0.067 0.933 34 H 0.118 0.882 35 H 0.101 0.899 36 H 0.119 0.881 37 H 0.408 0.592 38 H 0.053 0.947 39 H 0.070 0.930 40 H 0.078 0.922 41 H 0.010 0.990 42 H 0.021 0.979 43 H 0.379 0.621 44 H 0.251 0.749 45 H 0.086 0.914 46 H 0.110 0.890 47 H 0.096 0.904 48 H 0.104 0.896 49 H 0.109 0.891 50 H 0.102 0.898 51 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.281 -3.799 17.841 19.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.338 5.338 3 C -0.007 4.007 4 C -0.093 4.093 5 N -0.263 5.263 6 C -0.087 4.087 7 C 0.298 3.702 8 O -0.436 6.436 9 N -0.357 5.357 10 C 0.129 3.871 11 C -0.209 4.209 12 C 0.017 3.983 13 N -0.368 5.368 14 C -0.373 4.373 15 H 0.075 0.925 16 C -0.257 4.257 17 N -0.611 5.611 18 Si 0.793 3.207 19 H -0.203 1.203 20 H -0.218 1.218 21 H -0.217 1.217 22 C -0.192 4.192 23 C -0.206 4.206 24 C -0.189 4.189 25 C -0.084 4.084 26 C 0.306 3.694 27 O -0.480 6.480 28 H 0.084 0.916 29 H 0.108 0.892 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.137 0.863 33 H 0.085 0.915 34 H 0.136 0.864 35 H 0.118 0.882 36 H 0.137 0.863 37 H 0.244 0.756 38 H 0.072 0.928 39 H 0.089 0.911 40 H 0.097 0.903 41 H 0.028 0.972 42 H 0.039 0.961 43 H 0.212 0.788 44 H 0.060 0.940 45 H 0.104 0.896 46 H 0.128 0.872 47 H 0.115 0.885 48 H 0.123 0.877 49 H 0.128 0.872 50 H 0.119 0.881 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -7.310 -4.619 16.592 18.710 hybrid contribution 0.489 0.891 -0.288 1.056 sum -6.821 -3.728 16.304 18.062 Atomic orbital electron populations 1.21864 0.78504 1.03638 1.03252 1.47488 1.08285 1.06485 1.71573 1.21775 0.91813 0.83766 1.03320 1.22698 0.94704 0.95755 0.96131 1.62018 1.03745 1.03465 1.57035 1.22056 0.87628 1.00698 0.98288 1.20895 0.82285 0.82518 0.84527 1.90615 1.60936 1.49744 1.42337 1.45838 1.06968 1.49852 1.33055 1.19727 0.90652 0.90279 0.86470 1.22175 1.01807 0.94281 1.02684 1.21075 0.96704 0.85902 0.94582 1.42239 1.66624 1.11593 1.16367 1.19522 1.27877 0.96060 0.93860 0.92458 1.25310 1.01677 0.97792 1.00883 1.69765 1.44079 1.13629 1.33607 0.85224 0.77023 0.78395 0.80039 1.20306 1.21762 1.21690 1.22247 0.92533 0.99415 1.05004 1.23183 1.01686 0.94370 1.01386 1.23033 1.02847 1.02597 0.90387 1.22261 0.89377 0.94437 1.02361 1.20431 0.90896 0.83233 0.74843 1.90662 1.67743 1.36322 1.53298 0.91558 0.89193 0.91029 0.91401 0.86316 0.91492 0.86408 0.88159 0.86292 0.75575 0.92833 0.91087 0.90324 0.97182 0.96134 0.78777 0.94006 0.89613 0.87209 0.88522 0.87733 0.87227 0.88052 0.89651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.26 10.55 127.77 1.35 2.61 16 2 N -0.61 -13.62 3.23 -850.20 -2.74 -16.36 16 3 C 0.12 1.82 6.64 86.47 0.57 2.39 16 4 C 0.03 0.53 5.60 86.25 0.48 1.02 16 5 N -0.54 -13.09 4.47 -905.45 -4.05 -17.14 16 6 C 0.04 0.97 5.44 85.56 0.47 1.44 16 7 C 0.51 15.98 7.00 87.66 0.61 16.59 16 8 O -0.56 -22.33 10.54 -3.04 -0.03 -22.36 16 9 N -0.71 -20.05 4.73 -422.92 -2.00 -22.05 16 10 C 0.21 6.86 0.54 3.60 0.00 6.86 16 11 C -0.15 -4.23 7.10 71.98 0.51 -3.72 16 12 C 0.15 6.40 4.90 86.38 0.42 6.82 16 13 N -0.72 -37.27 5.04 -343.44 -1.73 -39.00 16 14 C -0.24 -14.02 9.99 84.04 0.84 -13.18 16 15 H 0.06 3.38 7.83 -2.91 -0.02 3.36 16 16 C -0.06 -3.69 5.50 84.86 0.47 -3.23 16 17 N -0.96 -57.08 13.06 21.65 0.28 -56.80 16 18 Si 0.96 47.17 29.55 68.60 2.03 49.20 16 19 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 20 H -0.29 -14.05 7.11 99.48 0.71 -13.35 16 21 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 22 C -0.17 -4.96 4.86 -10.79 -0.05 -5.01 16 23 C -0.17 -3.81 9.64 30.62 0.30 -3.52 16 24 C -0.15 -3.00 9.72 30.62 0.30 -2.71 16 25 C 0.05 1.23 5.14 85.42 0.44 1.67 16 26 C 0.52 15.32 7.57 87.68 0.66 15.99 16 27 O -0.60 -22.25 16.07 -3.03 -0.05 -22.30 16 28 H 0.07 1.54 6.67 -2.39 -0.02 1.53 16 29 H 0.09 1.07 8.14 -2.38 -0.02 1.05 16 30 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.12 0.99 8.13 -2.38 -0.02 0.97 16 33 H 0.07 0.78 8.08 -2.39 -0.02 0.76 16 34 H 0.12 1.47 7.91 -2.38 -0.02 1.45 16 35 H 0.10 1.45 8.05 -2.39 -0.02 1.43 16 36 H 0.12 2.56 7.93 -2.38 -0.02 2.54 16 37 H 0.41 9.33 8.38 -92.71 -0.78 8.55 16 38 H 0.05 1.78 6.31 -2.39 -0.02 1.76 16 39 H 0.07 1.87 6.78 -2.39 -0.02 1.85 16 40 H 0.08 1.76 6.99 -2.39 -0.02 1.74 16 41 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 42 H 0.02 1.04 6.04 -2.38 -0.01 1.03 16 43 H 0.38 19.69 6.62 -92.71 -0.61 19.08 16 44 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 45 H 0.09 3.13 7.08 -2.39 -0.02 3.11 16 46 H 0.11 2.25 5.88 -2.39 -0.01 2.24 16 47 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 48 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 49 H 0.11 1.81 7.35 -2.39 -0.02 1.80 16 50 H 0.10 3.47 6.00 -2.39 -0.01 3.45 16 51 H 0.09 1.84 8.05 -2.39 -0.02 1.82 16 Total: -1.00 -80.75 395.47 -1.36 -82.11 By element: Atomic # 1 Polarization: 41.09 SS G_CDS: -0.44 Total: 40.65 kcal Atomic # 6 Polarization: 16.67 SS G_CDS: 7.37 Total: 24.04 kcal Atomic # 7 Polarization: -141.11 SS G_CDS: -10.24 Total: -151.35 kcal Atomic # 8 Polarization: -44.57 SS G_CDS: -0.08 Total: -44.65 kcal Atomic # 14 Polarization: 47.17 SS G_CDS: 2.03 Total: 49.20 kcal Total: -80.75 -1.36 -82.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715115377.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.256 kcal (2) G-P(sol) polarization free energy of solvation -80.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds