Wall clock time and date at job start Tue Mar 31 2020 21:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 110.64135 * 2 1 4 4 C 1.54319 * 110.72286 * 123.14332 * 2 1 3 5 5 N 1.47015 * 107.27428 * 140.55826 * 4 2 1 6 6 C 1.34782 * 125.64999 * 181.02585 * 5 4 2 7 7 O 1.21286 * 119.99696 * 180.02562 * 6 5 4 8 8 C 1.50696 * 119.99729 * 0.02562 * 6 5 4 9 9 N 1.46907 * 109.46926 * 180.02562 * 8 6 5 10 10 C 1.47189 * 110.99988 * 188.93963 * 9 8 6 11 11 C 1.52992 * 108.71408 * 167.62109 * 10 9 8 12 12 N 1.46003 * 110.04486 * 50.30578 * 11 10 9 13 13 C 1.46492 * 118.54043 * 161.86176 * 12 11 10 14 14 C 1.33718 * 122.92436 * 341.83433 * 12 11 10 15 15 O 1.21287 * 118.62436 * 181.68565 * 14 12 11 16 16 C 1.46906 * 110.99918 * 66.04647 * 9 8 6 17 17 C 1.47423 * 108.70463 * 1.28432 * 5 4 2 18 18 C 1.55133 * 104.72016 * 335.55815 * 17 5 4 19 19 H 1.09003 * 111.22556 * 279.17731 * 18 17 5 20 20 C 1.53004 * 110.90838 * 155.27434 * 18 17 5 21 21 N 1.46497 * 109.47079 * 72.97608 * 20 18 17 22 22 C 1.36937 * 119.99987 * 180.02562 * 21 20 18 23 23 H 1.07998 * 120.00057 * 359.97438 * 22 21 20 24 24 C 1.38810 * 120.00112 * 179.97438 * 22 21 20 25 25 N 1.31620 * 120.00218 * 179.97438 * 24 22 21 26 26 Si 1.86805 * 119.99921 * 359.97438 * 24 22 21 27 27 H 1.48501 * 109.46969 * 90.00342 * 26 24 22 28 28 H 1.48497 * 109.47006 * 209.99749 * 26 24 22 29 29 H 1.48496 * 109.46998 * 330.00097 * 26 24 22 30 30 H 1.09010 * 109.46786 * 298.31255 * 1 2 3 31 31 H 1.08996 * 109.47341 * 58.31068 * 1 2 3 32 32 H 1.08993 * 109.47122 * 178.31320 * 1 2 3 33 33 H 1.08996 * 109.88438 * 21.13362 * 4 2 1 34 34 H 1.09004 * 110.00862 * 260.04451 * 4 2 1 35 35 H 1.08991 * 109.47219 * 60.00375 * 8 6 5 36 36 H 1.09001 * 109.47058 * 300.00219 * 8 6 5 37 37 H 1.09003 * 109.58895 * 287.40516 * 10 9 8 38 38 H 1.09000 * 109.59611 * 47.85995 * 10 9 8 39 39 H 1.08996 * 109.37844 * 290.12692 * 11 10 9 40 40 H 1.09006 * 109.37876 * 170.47829 * 11 10 9 41 41 H 1.09006 * 109.47652 * 179.97438 * 13 12 11 42 42 H 1.09005 * 109.47429 * 299.97412 * 13 12 11 43 43 H 1.09003 * 109.47240 * 59.97675 * 13 12 11 44 44 H 1.09001 * 109.38737 * 293.82263 * 16 9 8 45 45 H 1.08999 * 109.38434 * 53.61058 * 16 9 8 46 46 H 1.08999 * 110.36719 * 94.48376 * 17 5 4 47 47 H 1.08993 * 110.37012 * 216.81275 * 17 5 4 48 48 H 1.08998 * 109.46760 * 192.97589 * 20 18 17 49 49 H 1.08997 * 109.46988 * 312.97744 * 20 18 17 50 50 H 0.97004 * 120.00016 * 359.97438 * 21 20 18 51 51 H 0.96996 * 120.00276 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0760 -0.7891 1.2085 5 7 3.2445 -1.5494 0.7416 6 6 3.9924 -2.3810 1.4937 7 8 4.9385 -2.9584 1.0013 8 6 3.6529 -2.5934 2.9465 9 7 4.6105 -3.5360 3.5404 10 6 4.1900 -3.9324 4.8941 11 6 5.0330 -5.1290 5.3393 12 7 6.4507 -4.8461 5.1349 13 6 7.4370 -5.6617 5.8477 14 6 6.8889 -3.8759 4.3257 15 8 8.0852 -3.7289 4.1898 16 6 5.9616 -2.9605 3.5777 17 6 3.4666 -1.2467 -0.6840 18 6 2.0790 -0.7974 -1.2124 19 1 1.4447 -1.6556 -1.4351 20 6 2.2277 0.1039 -2.4398 21 7 2.6327 -0.7040 -3.5928 22 6 2.8288 -0.1093 -4.8106 23 1 2.6846 0.9553 -4.9211 24 6 3.2131 -0.8747 -5.9030 25 7 3.4011 -0.3032 -7.0736 26 14 3.4633 -2.7160 -5.7116 27 1 2.1842 -3.4202 -5.9827 28 1 4.4960 -3.1778 -6.6736 29 1 3.9084 -3.0137 -4.3266 30 1 -0.3633 0.4875 0.9048 31 1 -0.3634 0.5398 -0.8744 32 1 -0.3633 -1.0271 -0.0302 33 1 1.3130 -1.4731 1.5801 34 1 2.3736 -0.1009 1.9997 35 1 2.6447 -2.9992 3.0285 36 1 3.7055 -1.6414 3.4748 37 1 4.3426 -3.1010 5.5823 38 1 3.1364 -4.2117 4.8825 39 1 4.7517 -6.0063 4.7568 40 1 4.8522 -5.3256 6.3961 41 1 8.4413 -5.3265 5.5885 42 1 7.2856 -5.5585 6.9222 43 1 7.3181 -6.7071 5.5627 44 1 6.3270 -2.8288 2.5592 45 1 5.9289 -1.9928 4.0783 46 1 4.1947 -0.4428 -0.7922 47 1 3.8031 -2.1381 -1.2132 48 1 1.2747 0.5884 -2.6524 49 1 2.9853 0.8626 -2.2437 50 1 2.7626 -1.6602 -3.4934 51 1 3.6693 -0.8381 -7.8370 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716985849.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:57:38 Heat of formation + Delta-G solvation = -30.376032 kcal Electronic energy + Delta-G solvation = -30010.225076 eV Core-core repulsion = 25945.549844 eV Total energy + Delta-G solvation = -4064.675233 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.96978 -40.13773 -38.36862 -37.19809 -35.52468 -34.87994 -33.03012 -31.57615 -30.78751 -30.07866 -29.31059 -27.18912 -26.43149 -25.57513 -24.80975 -23.14816 -22.57408 -21.13886 -20.21404 -19.43542 -19.05731 -17.81008 -17.56353 -17.08904 -16.78971 -16.47869 -16.22336 -15.63619 -15.22232 -14.92285 -14.65506 -14.52658 -14.20934 -14.06327 -13.86801 -13.59730 -13.38612 -13.28101 -12.98474 -12.87438 -12.73949 -12.59360 -12.41459 -12.35207 -12.26998 -12.16491 -11.96408 -11.76197 -11.52220 -11.43903 -10.95498 -10.70058 -10.57159 -10.38011 -10.18798 -10.11519 -9.84050 -9.58039 -9.11355 -8.94122 -8.89390 -8.68564 -7.23834 -5.76162 -3.12260 2.31259 2.50931 2.57244 2.70693 3.35450 3.40571 3.44965 3.49042 4.09488 4.19225 4.22055 4.37935 4.53339 4.58420 4.61094 4.66961 4.75067 4.81293 4.88770 4.94726 4.98361 5.01671 5.11357 5.12412 5.26179 5.32249 5.35083 5.36039 5.44866 5.53536 5.54273 5.60098 5.63198 5.74013 5.86763 5.94956 5.97614 6.06441 6.10041 6.12663 6.20765 6.29744 6.38064 6.58589 6.68770 7.02960 7.43630 7.83049 7.98674 8.09237 8.42549 9.21131 9.93704 10.12498 11.42046 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.013995 B = 0.002484 C = 0.002215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2000.267804 B =11269.234490 C =12639.058094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.097 4.097 3 H 0.089 0.911 4 C 0.104 3.896 5 N -0.619 5.619 6 C 0.524 3.476 7 O -0.520 6.520 8 C 0.041 3.959 9 N -0.516 5.516 10 C 0.034 3.966 11 C 0.121 3.879 12 N -0.610 5.610 13 C 0.072 3.928 14 C 0.527 3.473 15 O -0.548 6.548 16 C 0.034 3.966 17 C 0.114 3.886 18 C -0.105 4.105 19 H 0.086 0.914 20 C 0.170 3.830 21 N -0.756 5.756 22 C -0.245 4.245 23 H 0.090 0.910 24 C 0.006 3.994 25 N -0.933 5.933 26 Si 0.883 3.117 27 H -0.284 1.284 28 H -0.290 1.290 29 H -0.276 1.276 30 H 0.055 0.945 31 H 0.066 0.934 32 H 0.056 0.944 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.110 0.890 36 H 0.068 0.932 37 H 0.048 0.952 38 H 0.100 0.900 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.090 0.910 42 H 0.059 0.941 43 H 0.060 0.940 44 H 0.136 0.864 45 H 0.069 0.931 46 H 0.074 0.926 47 H 0.080 0.920 48 H 0.033 0.967 49 H 0.029 0.971 50 H 0.361 0.639 51 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.892 -5.878 32.420 33.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.116 4.116 3 H 0.108 0.892 4 C -0.019 4.019 5 N -0.355 5.355 6 C 0.311 3.689 7 O -0.395 6.395 8 C -0.090 4.090 9 N -0.242 5.242 10 C -0.094 4.094 11 C -0.002 4.002 12 N -0.344 5.344 13 C -0.070 4.070 14 C 0.315 3.685 15 O -0.425 6.425 16 C -0.096 4.096 17 C -0.008 4.008 18 C -0.125 4.125 19 H 0.104 0.896 20 C 0.042 3.958 21 N -0.402 5.402 22 C -0.375 4.375 23 H 0.108 0.892 24 C -0.190 4.190 25 N -0.581 5.581 26 Si 0.713 3.287 27 H -0.211 1.211 28 H -0.217 1.217 29 H -0.202 1.202 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.128 0.872 36 H 0.086 0.914 37 H 0.066 0.934 38 H 0.118 0.882 39 H 0.094 0.906 40 H 0.100 0.900 41 H 0.109 0.891 42 H 0.078 0.922 43 H 0.079 0.921 44 H 0.153 0.847 45 H 0.086 0.914 46 H 0.092 0.908 47 H 0.098 0.902 48 H 0.051 0.949 49 H 0.047 0.953 50 H 0.194 0.806 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.657 -6.417 31.656 32.506 hybrid contribution -0.028 -0.633 0.510 0.813 sum -3.685 -7.050 32.166 33.135 Atomic orbital electron populations 1.21753 0.93608 1.02228 1.02228 1.22202 0.96466 0.99622 0.93342 0.89247 1.22169 0.87650 0.94643 0.97477 1.48564 1.30245 1.44496 1.12154 1.20029 0.82535 0.78536 0.87778 1.90731 1.28250 1.47183 1.73320 1.22020 0.97777 0.96211 0.92970 1.62152 1.01360 1.40699 1.19944 1.22563 1.00563 0.97363 0.88891 1.21486 0.79268 0.98280 1.01187 1.47302 1.07340 1.34261 1.45524 1.21743 0.94568 0.94907 0.95791 1.20099 0.89258 0.80743 0.78406 1.90725 1.16387 1.71039 1.64303 1.22542 0.87725 0.95219 1.04088 1.22414 0.97579 1.01596 0.79198 1.22771 0.95325 0.99341 0.95051 0.89596 1.20559 0.97945 0.92552 0.84717 1.42721 1.84271 1.06272 1.06914 1.19024 1.39159 0.94690 0.84644 0.89198 1.24669 1.01426 0.97476 0.95459 1.69698 1.53545 1.34833 1.00048 0.86573 0.77774 0.87050 0.77317 1.21098 1.21658 1.20178 0.92595 0.91453 0.92455 0.91346 0.91581 0.87215 0.91412 0.93361 0.88178 0.90578 0.90037 0.89124 0.92245 0.92092 0.84676 0.91354 0.90783 0.90195 0.94890 0.95277 0.80621 0.93034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 9.13 37.16 0.34 -0.82 16 2 C -0.10 -0.94 3.01 -88.79 -0.27 -1.21 16 3 H 0.09 0.85 8.04 -51.93 -0.42 0.43 16 4 C 0.10 0.86 6.08 -3.07 -0.02 0.85 16 5 N -0.62 -7.45 3.32 -170.39 -0.57 -8.02 16 6 C 0.52 6.69 7.61 -10.99 -0.08 6.61 16 7 O -0.52 -9.05 14.56 5.55 0.08 -8.97 16 8 C 0.04 0.33 4.63 -4.97 -0.02 0.31 16 9 N -0.52 -4.76 4.47 -237.54 -1.06 -5.82 16 10 C 0.03 0.19 5.60 -3.67 -0.02 0.16 16 11 C 0.12 0.69 6.64 -4.31 -0.03 0.66 16 12 N -0.61 -5.64 3.23 -182.47 -0.59 -6.23 16 13 C 0.07 0.54 10.55 59.84 0.63 1.18 16 14 C 0.53 6.62 7.57 -11.67 -0.09 6.53 16 15 O -0.55 -8.92 16.07 5.55 0.09 -8.83 16 16 C 0.03 0.39 5.14 -5.19 -0.03 0.36 16 17 C 0.11 1.70 6.33 -2.41 -0.02 1.68 16 18 C -0.11 -1.45 2.51 -88.35 -0.22 -1.67 16 19 H 0.09 1.23 8.04 -51.93 -0.42 0.81 16 20 C 0.17 3.04 5.72 -4.04 -0.02 3.02 16 21 N -0.76 -17.63 5.35 -59.91 -0.32 -17.95 16 22 C -0.25 -6.92 10.47 -15.06 -0.16 -7.08 16 23 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 24 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 25 N -0.93 -29.54 13.97 55.49 0.78 -28.76 16 26 Si 0.88 22.57 27.74 -169.99 -4.71 17.86 16 27 H -0.28 -7.17 7.11 56.52 0.40 -6.76 16 28 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 29 H -0.28 -6.74 6.52 56.52 0.37 -6.37 16 30 H 0.05 0.35 8.14 -51.92 -0.42 -0.07 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.47 8.13 -51.93 -0.42 0.05 16 33 H 0.07 0.45 7.82 -51.93 -0.41 0.05 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.11 0.62 7.93 -51.93 -0.41 0.21 16 36 H 0.07 0.41 8.05 -51.93 -0.42 -0.01 16 37 H 0.05 0.22 8.08 -51.93 -0.42 -0.20 16 38 H 0.10 0.31 7.91 -51.93 -0.41 -0.10 16 39 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.08 0.25 8.13 -51.93 -0.42 -0.17 16 41 H 0.09 0.87 6.67 -51.93 -0.35 0.53 16 42 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 43 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.14 1.97 6.01 -51.93 -0.31 1.66 16 45 H 0.07 0.64 8.05 -51.93 -0.42 0.23 16 46 H 0.07 1.16 7.91 -51.93 -0.41 0.75 16 47 H 0.08 1.41 8.03 -51.93 -0.42 0.99 16 48 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 49 H 0.03 0.54 7.96 -51.93 -0.41 0.12 16 50 H 0.36 8.36 5.53 -40.82 -0.23 8.14 16 51 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 LS Contribution 401.59 15.07 6.05 6.05 Total: -1.00 -37.69 401.59 -9.19 -46.89 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -8.84 Total: 3.14 kcal Atomic # 6 Polarization: 10.75 SS G_CDS: -0.10 Total: 10.65 kcal Atomic # 7 Polarization: -65.02 SS G_CDS: -1.76 Total: -66.78 kcal Atomic # 8 Polarization: -17.98 SS G_CDS: 0.17 Total: -17.80 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -4.71 Total: 17.86 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -37.69 -9.19 -46.89 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716985849.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.513 kcal (2) G-P(sol) polarization free energy of solvation -37.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds