Wall clock time and date at job start Tue Mar 31 2020 21:57:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.09001 * 110.64135 * 2 1
4 4 C 1.54319 * 110.72286 * 123.14332 * 2 1 3
5 5 N 1.47015 * 107.27428 * 140.55826 * 4 2 1
6 6 C 1.34782 * 125.64999 * 181.02585 * 5 4 2
7 7 O 1.21286 * 119.99696 * 180.02562 * 6 5 4
8 8 C 1.50696 * 119.99729 * 0.02562 * 6 5 4
9 9 N 1.46907 * 109.46926 * 180.02562 * 8 6 5
10 10 C 1.47189 * 110.99988 * 188.93963 * 9 8 6
11 11 C 1.52992 * 108.71408 * 167.62109 * 10 9 8
12 12 N 1.46003 * 110.04486 * 50.30578 * 11 10 9
13 13 C 1.46492 * 118.54043 * 161.86176 * 12 11 10
14 14 C 1.33718 * 122.92436 * 341.83433 * 12 11 10
15 15 O 1.21287 * 118.62436 * 181.68565 * 14 12 11
16 16 C 1.46906 * 110.99918 * 66.04647 * 9 8 6
17 17 C 1.47423 * 108.70463 * 1.28432 * 5 4 2
18 18 C 1.55133 * 104.72016 * 335.55815 * 17 5 4
19 19 H 1.09003 * 111.22556 * 279.17731 * 18 17 5
20 20 C 1.53004 * 110.90838 * 155.27434 * 18 17 5
21 21 N 1.46497 * 109.47079 * 72.97608 * 20 18 17
22 22 C 1.36937 * 119.99987 * 180.02562 * 21 20 18
23 23 H 1.07998 * 120.00057 * 359.97438 * 22 21 20
24 24 C 1.38810 * 120.00112 * 179.97438 * 22 21 20
25 25 N 1.31620 * 120.00218 * 179.97438 * 24 22 21
26 26 Si 1.86805 * 119.99921 * 359.97438 * 24 22 21
27 27 H 1.48501 * 109.46969 * 90.00342 * 26 24 22
28 28 H 1.48497 * 109.47006 * 209.99749 * 26 24 22
29 29 H 1.48496 * 109.46998 * 330.00097 * 26 24 22
30 30 H 1.09010 * 109.46786 * 298.31255 * 1 2 3
31 31 H 1.08996 * 109.47341 * 58.31068 * 1 2 3
32 32 H 1.08993 * 109.47122 * 178.31320 * 1 2 3
33 33 H 1.08996 * 109.88438 * 21.13362 * 4 2 1
34 34 H 1.09004 * 110.00862 * 260.04451 * 4 2 1
35 35 H 1.08991 * 109.47219 * 60.00375 * 8 6 5
36 36 H 1.09001 * 109.47058 * 300.00219 * 8 6 5
37 37 H 1.09003 * 109.58895 * 287.40516 * 10 9 8
38 38 H 1.09000 * 109.59611 * 47.85995 * 10 9 8
39 39 H 1.08996 * 109.37844 * 290.12692 * 11 10 9
40 40 H 1.09006 * 109.37876 * 170.47829 * 11 10 9
41 41 H 1.09006 * 109.47652 * 179.97438 * 13 12 11
42 42 H 1.09005 * 109.47429 * 299.97412 * 13 12 11
43 43 H 1.09003 * 109.47240 * 59.97675 * 13 12 11
44 44 H 1.09001 * 109.38737 * 293.82263 * 16 9 8
45 45 H 1.08999 * 109.38434 * 53.61058 * 16 9 8
46 46 H 1.08999 * 110.36719 * 94.48376 * 17 5 4
47 47 H 1.08993 * 110.37012 * 216.81275 * 17 5 4
48 48 H 1.08998 * 109.46760 * 192.97589 * 20 18 17
49 49 H 1.08997 * 109.46988 * 312.97744 * 20 18 17
50 50 H 0.97004 * 120.00016 * 359.97438 * 21 20 18
51 51 H 0.96996 * 120.00276 * 180.02562 * 25 24 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9142 1.0200 0.0000
4 6 2.0760 -0.7891 1.2085
5 7 3.2445 -1.5494 0.7416
6 6 3.9924 -2.3810 1.4937
7 8 4.9385 -2.9584 1.0013
8 6 3.6529 -2.5934 2.9465
9 7 4.6105 -3.5360 3.5404
10 6 4.1900 -3.9324 4.8941
11 6 5.0330 -5.1290 5.3393
12 7 6.4507 -4.8461 5.1349
13 6 7.4370 -5.6617 5.8477
14 6 6.8889 -3.8759 4.3257
15 8 8.0852 -3.7289 4.1898
16 6 5.9616 -2.9605 3.5777
17 6 3.4666 -1.2467 -0.6840
18 6 2.0790 -0.7974 -1.2124
19 1 1.4447 -1.6556 -1.4351
20 6 2.2277 0.1039 -2.4398
21 7 2.6327 -0.7040 -3.5928
22 6 2.8288 -0.1093 -4.8106
23 1 2.6846 0.9553 -4.9211
24 6 3.2131 -0.8747 -5.9030
25 7 3.4011 -0.3032 -7.0736
26 14 3.4633 -2.7160 -5.7116
27 1 2.1842 -3.4202 -5.9827
28 1 4.4960 -3.1778 -6.6736
29 1 3.9084 -3.0137 -4.3266
30 1 -0.3633 0.4875 0.9048
31 1 -0.3634 0.5398 -0.8744
32 1 -0.3633 -1.0271 -0.0302
33 1 1.3130 -1.4731 1.5801
34 1 2.3736 -0.1009 1.9997
35 1 2.6447 -2.9992 3.0285
36 1 3.7055 -1.6414 3.4748
37 1 4.3426 -3.1010 5.5823
38 1 3.1364 -4.2117 4.8825
39 1 4.7517 -6.0063 4.7568
40 1 4.8522 -5.3256 6.3961
41 1 8.4413 -5.3265 5.5885
42 1 7.2856 -5.5585 6.9222
43 1 7.3181 -6.7071 5.5627
44 1 6.3270 -2.8288 2.5592
45 1 5.9289 -1.9928 4.0783
46 1 4.1947 -0.4428 -0.7922
47 1 3.8031 -2.1381 -1.2132
48 1 1.2747 0.5884 -2.6524
49 1 2.9853 0.8626 -2.2437
50 1 2.7626 -1.6602 -3.4934
51 1 3.6693 -0.8381 -7.8370
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001716985849.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:57:38
Heat of formation + Delta-G solvation = -30.376032 kcal
Electronic energy + Delta-G solvation = -30010.225076 eV
Core-core repulsion = 25945.549844 eV
Total energy + Delta-G solvation = -4064.675233 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.211 amu
Computer time = 1.05 seconds
Orbital eigenvalues (eV)
-40.96978 -40.13773 -38.36862 -37.19809 -35.52468 -34.87994 -33.03012 -31.57615
-30.78751 -30.07866 -29.31059 -27.18912 -26.43149 -25.57513 -24.80975 -23.14816
-22.57408 -21.13886 -20.21404 -19.43542 -19.05731 -17.81008 -17.56353 -17.08904
-16.78971 -16.47869 -16.22336 -15.63619 -15.22232 -14.92285 -14.65506 -14.52658
-14.20934 -14.06327 -13.86801 -13.59730 -13.38612 -13.28101 -12.98474 -12.87438
-12.73949 -12.59360 -12.41459 -12.35207 -12.26998 -12.16491 -11.96408 -11.76197
-11.52220 -11.43903 -10.95498 -10.70058 -10.57159 -10.38011 -10.18798 -10.11519
-9.84050 -9.58039 -9.11355 -8.94122 -8.89390 -8.68564 -7.23834 -5.76162
-3.12260 2.31259 2.50931 2.57244 2.70693 3.35450 3.40571 3.44965
3.49042 4.09488 4.19225 4.22055 4.37935 4.53339 4.58420 4.61094
4.66961 4.75067 4.81293 4.88770 4.94726 4.98361 5.01671 5.11357
5.12412 5.26179 5.32249 5.35083 5.36039 5.44866 5.53536 5.54273
5.60098 5.63198 5.74013 5.86763 5.94956 5.97614 6.06441 6.10041
6.12663 6.20765 6.29744 6.38064 6.58589 6.68770 7.02960 7.43630
7.83049 7.98674 8.09237 8.42549 9.21131 9.93704 10.12498 11.42046
Molecular weight = 338.21amu
Principal moments of inertia in cm(-1)
A = 0.013995 B = 0.002484 C = 0.002215
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2000.267804 B =11269.234490 C =12639.058094
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.141 4.141
2 C -0.097 4.097
3 H 0.089 0.911
4 C 0.104 3.896
5 N -0.619 5.619
6 C 0.524 3.476
7 O -0.520 6.520
8 C 0.041 3.959
9 N -0.516 5.516
10 C 0.034 3.966
11 C 0.121 3.879
12 N -0.610 5.610
13 C 0.072 3.928
14 C 0.527 3.473
15 O -0.548 6.548
16 C 0.034 3.966
17 C 0.114 3.886
18 C -0.105 4.105
19 H 0.086 0.914
20 C 0.170 3.830
21 N -0.756 5.756
22 C -0.245 4.245
23 H 0.090 0.910
24 C 0.006 3.994
25 N -0.933 5.933
26 Si 0.883 3.117
27 H -0.284 1.284
28 H -0.290 1.290
29 H -0.276 1.276
30 H 0.055 0.945
31 H 0.066 0.934
32 H 0.056 0.944
33 H 0.068 0.932
34 H 0.066 0.934
35 H 0.110 0.890
36 H 0.068 0.932
37 H 0.048 0.952
38 H 0.100 0.900
39 H 0.076 0.924
40 H 0.081 0.919
41 H 0.090 0.910
42 H 0.059 0.941
43 H 0.060 0.940
44 H 0.136 0.864
45 H 0.069 0.931
46 H 0.074 0.926
47 H 0.080 0.920
48 H 0.033 0.967
49 H 0.029 0.971
50 H 0.361 0.639
51 H 0.260 0.740
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.892 -5.878 32.420 33.309
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.198 4.198
2 C -0.116 4.116
3 H 0.108 0.892
4 C -0.019 4.019
5 N -0.355 5.355
6 C 0.311 3.689
7 O -0.395 6.395
8 C -0.090 4.090
9 N -0.242 5.242
10 C -0.094 4.094
11 C -0.002 4.002
12 N -0.344 5.344
13 C -0.070 4.070
14 C 0.315 3.685
15 O -0.425 6.425
16 C -0.096 4.096
17 C -0.008 4.008
18 C -0.125 4.125
19 H 0.104 0.896
20 C 0.042 3.958
21 N -0.402 5.402
22 C -0.375 4.375
23 H 0.108 0.892
24 C -0.190 4.190
25 N -0.581 5.581
26 Si 0.713 3.287
27 H -0.211 1.211
28 H -0.217 1.217
29 H -0.202 1.202
30 H 0.074 0.926
31 H 0.085 0.915
32 H 0.075 0.925
33 H 0.087 0.913
34 H 0.084 0.916
35 H 0.128 0.872
36 H 0.086 0.914
37 H 0.066 0.934
38 H 0.118 0.882
39 H 0.094 0.906
40 H 0.100 0.900
41 H 0.109 0.891
42 H 0.078 0.922
43 H 0.079 0.921
44 H 0.153 0.847
45 H 0.086 0.914
46 H 0.092 0.908
47 H 0.098 0.902
48 H 0.051 0.949
49 H 0.047 0.953
50 H 0.194 0.806
51 H 0.070 0.930
Dipole moment (debyes) X Y Z Total
from point charges -3.657 -6.417 31.656 32.506
hybrid contribution -0.028 -0.633 0.510 0.813
sum -3.685 -7.050 32.166 33.135
Atomic orbital electron populations
1.21753 0.93608 1.02228 1.02228 1.22202 0.96466 0.99622 0.93342
0.89247 1.22169 0.87650 0.94643 0.97477 1.48564 1.30245 1.44496
1.12154 1.20029 0.82535 0.78536 0.87778 1.90731 1.28250 1.47183
1.73320 1.22020 0.97777 0.96211 0.92970 1.62152 1.01360 1.40699
1.19944 1.22563 1.00563 0.97363 0.88891 1.21486 0.79268 0.98280
1.01187 1.47302 1.07340 1.34261 1.45524 1.21743 0.94568 0.94907
0.95791 1.20099 0.89258 0.80743 0.78406 1.90725 1.16387 1.71039
1.64303 1.22542 0.87725 0.95219 1.04088 1.22414 0.97579 1.01596
0.79198 1.22771 0.95325 0.99341 0.95051 0.89596 1.20559 0.97945
0.92552 0.84717 1.42721 1.84271 1.06272 1.06914 1.19024 1.39159
0.94690 0.84644 0.89198 1.24669 1.01426 0.97476 0.95459 1.69698
1.53545 1.34833 1.00048 0.86573 0.77774 0.87050 0.77317 1.21098
1.21658 1.20178 0.92595 0.91453 0.92455 0.91346 0.91581 0.87215
0.91412 0.93361 0.88178 0.90578 0.90037 0.89124 0.92245 0.92092
0.84676 0.91354 0.90783 0.90195 0.94890 0.95277 0.80621 0.93034
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.16 9.13 37.16 0.34 -0.82 16
2 C -0.10 -0.94 3.01 -88.79 -0.27 -1.21 16
3 H 0.09 0.85 8.04 -51.93 -0.42 0.43 16
4 C 0.10 0.86 6.08 -3.07 -0.02 0.85 16
5 N -0.62 -7.45 3.32 -170.39 -0.57 -8.02 16
6 C 0.52 6.69 7.61 -10.99 -0.08 6.61 16
7 O -0.52 -9.05 14.56 5.55 0.08 -8.97 16
8 C 0.04 0.33 4.63 -4.97 -0.02 0.31 16
9 N -0.52 -4.76 4.47 -237.54 -1.06 -5.82 16
10 C 0.03 0.19 5.60 -3.67 -0.02 0.16 16
11 C 0.12 0.69 6.64 -4.31 -0.03 0.66 16
12 N -0.61 -5.64 3.23 -182.47 -0.59 -6.23 16
13 C 0.07 0.54 10.55 59.84 0.63 1.18 16
14 C 0.53 6.62 7.57 -11.67 -0.09 6.53 16
15 O -0.55 -8.92 16.07 5.55 0.09 -8.83 16
16 C 0.03 0.39 5.14 -5.19 -0.03 0.36 16
17 C 0.11 1.70 6.33 -2.41 -0.02 1.68 16
18 C -0.11 -1.45 2.51 -88.35 -0.22 -1.67 16
19 H 0.09 1.23 8.04 -51.93 -0.42 0.81 16
20 C 0.17 3.04 5.72 -4.04 -0.02 3.02 16
21 N -0.76 -17.63 5.35 -59.91 -0.32 -17.95 16
22 C -0.25 -6.92 10.47 -15.06 -0.16 -7.08 16
23 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16
24 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16
25 N -0.93 -29.54 13.97 55.49 0.78 -28.76 16
26 Si 0.88 22.57 27.74 -169.99 -4.71 17.86 16
27 H -0.28 -7.17 7.11 56.52 0.40 -6.76 16
28 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16
29 H -0.28 -6.74 6.52 56.52 0.37 -6.37 16
30 H 0.05 0.35 8.14 -51.92 -0.42 -0.07 16
31 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16
32 H 0.06 0.47 8.13 -51.93 -0.42 0.05 16
33 H 0.07 0.45 7.82 -51.93 -0.41 0.05 16
34 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16
35 H 0.11 0.62 7.93 -51.93 -0.41 0.21 16
36 H 0.07 0.41 8.05 -51.93 -0.42 -0.01 16
37 H 0.05 0.22 8.08 -51.93 -0.42 -0.20 16
38 H 0.10 0.31 7.91 -51.93 -0.41 -0.10 16
39 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16
40 H 0.08 0.25 8.13 -51.93 -0.42 -0.17 16
41 H 0.09 0.87 6.67 -51.93 -0.35 0.53 16
42 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16
43 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16
44 H 0.14 1.97 6.01 -51.93 -0.31 1.66 16
45 H 0.07 0.64 8.05 -51.93 -0.42 0.23 16
46 H 0.07 1.16 7.91 -51.93 -0.41 0.75 16
47 H 0.08 1.41 8.03 -51.93 -0.42 0.99 16
48 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16
49 H 0.03 0.54 7.96 -51.93 -0.41 0.12 16
50 H 0.36 8.36 5.53 -40.82 -0.23 8.14 16
51 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16
LS Contribution 401.59 15.07 6.05 6.05
Total: -1.00 -37.69 401.59 -9.19 -46.89
By element:
Atomic # 1 Polarization: 11.98 SS G_CDS: -8.84 Total: 3.14 kcal
Atomic # 6 Polarization: 10.75 SS G_CDS: -0.10 Total: 10.65 kcal
Atomic # 7 Polarization: -65.02 SS G_CDS: -1.76 Total: -66.78 kcal
Atomic # 8 Polarization: -17.98 SS G_CDS: 0.17 Total: -17.80 kcal
Atomic # 14 Polarization: 22.57 SS G_CDS: -4.71 Total: 17.86 kcal
Total LS contribution 6.05 Total: 6.05 kcal
Total: -37.69 -9.19 -46.89 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001716985849.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 16.513 kcal
(2) G-P(sol) polarization free energy of solvation -37.694 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.181 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.195 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.889 kcal
(6) G-S(sol) free energy of system = (1) + (5) -30.376 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.05 seconds