Wall clock time and date at job start Tue Mar 31 2020 21:50:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 109.86958 * 2 1 4 4 C 1.54320 * 109.88409 * 238.98538 * 2 1 3 5 5 H 1.09002 * 110.72273 * 144.07646 * 4 2 1 6 6 N 1.46904 * 110.71798 * 20.98627 * 4 2 1 7 7 C 1.46899 * 111.00029 * 155.00152 * 6 4 2 8 8 C 1.50703 * 109.47107 * 179.97438 * 7 6 4 9 9 O 1.21286 * 120.00016 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00161 * 180.02562 * 8 7 6 11 11 C 1.37091 * 120.00108 * 180.02562 * 10 8 7 12 12 H 1.07995 * 120.00333 * 359.97438 * 11 10 8 13 13 C 1.38953 * 119.99712 * 179.97438 * 11 10 8 14 14 N 1.31413 * 119.99793 * 179.97438 * 13 11 10 15 15 Si 1.86790 * 120.00276 * 359.97438 * 13 11 10 16 16 H 1.48506 * 109.47428 * 90.00011 * 15 13 11 17 17 H 1.48508 * 109.47300 * 209.99991 * 15 13 11 18 18 H 1.48504 * 109.47120 * 329.99721 * 15 13 11 19 19 C 1.55152 * 102.94371 * 262.62453 * 4 2 1 20 20 C 1.54914 * 101.58048 * 324.49447 * 19 4 2 21 21 N 1.47021 * 110.01061 * 121.09669 * 2 1 3 22 22 C 1.34770 * 125.65143 * 300.51574 * 21 2 1 23 23 O 1.21284 * 120.00319 * 359.97438 * 22 21 2 24 24 C 1.50701 * 119.99939 * 180.02562 * 22 21 2 25 25 N 1.46905 * 109.46899 * 180.02562 * 24 22 21 26 26 C 1.48531 * 111.00354 * 52.60341 * 25 24 22 27 27 C 1.54933 * 103.22975 * 159.72049 * 26 25 24 28 28 C 1.54597 * 102.92050 * 322.58538 * 27 26 25 29 29 C 1.47901 * 110.99866 * 169.99875 * 25 24 22 30 30 H 1.09002 * 109.46955 * 181.01418 * 1 2 3 31 31 H 1.09000 * 109.47040 * 301.01607 * 1 2 3 32 32 H 1.09004 * 109.46801 * 61.01387 * 1 2 3 33 33 H 1.00908 * 110.99583 * 278.95064 * 6 4 2 34 34 H 1.09002 * 109.47043 * 299.99792 * 7 6 4 35 35 H 1.09001 * 109.47354 * 59.99854 * 7 6 4 36 36 H 0.97005 * 119.99463 * 359.97438 * 10 8 7 37 37 H 0.96996 * 120.00229 * 180.02562 * 14 13 11 38 38 H 1.08992 * 111.00972 * 82.57068 * 19 4 2 39 39 H 1.09001 * 111.00462 * 206.42517 * 19 4 2 40 40 H 1.09004 * 110.36844 * 278.17490 * 20 19 4 41 41 H 1.08991 * 110.46194 * 155.89464 * 20 19 4 42 42 H 1.09005 * 109.46940 * 299.99406 * 24 22 21 43 43 H 1.08991 * 109.47717 * 59.99937 * 24 22 21 44 44 H 1.09003 * 110.66692 * 278.15507 * 26 25 24 45 45 H 1.09000 * 110.66645 * 41.28435 * 26 25 24 46 46 H 1.08996 * 110.72780 * 204.22405 * 27 26 25 47 47 H 1.09004 * 110.72433 * 80.93754 * 27 26 25 48 48 H 1.09002 * 110.31003 * 263.04024 * 28 27 26 49 49 H 1.09005 * 110.30713 * 140.87416 * 28 27 26 50 50 H 1.08998 * 109.91825 * 333.50875 * 29 25 24 51 51 H 1.09005 * 109.91692 * 94.60530 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0252 0.0000 4 6 2.0549 -0.7477 -1.2437 5 1 2.9625 -0.2773 -1.6221 6 7 1.0253 -0.8026 -2.2901 7 6 1.6329 -0.9485 -3.6195 8 6 0.5484 -1.0017 -4.6645 9 8 -0.6162 -0.9261 -4.3342 10 7 0.8724 -1.1344 -5.9660 11 6 -0.1141 -1.1823 -6.9166 12 1 -1.1511 -1.1141 -6.6227 13 6 0.2201 -1.3185 -8.2585 14 7 -0.7257 -1.3649 -9.1697 15 14 2.0136 -1.4357 -8.7671 16 1 2.4342 -2.8600 -8.7741 17 1 2.1809 -0.8636 -10.1272 18 1 2.8517 -0.6768 -7.8043 19 6 2.3557 -2.1673 -0.6946 20 6 2.8618 -1.8473 0.7341 21 7 2.0331 -0.7135 1.1829 22 6 1.7794 -0.3851 2.4652 23 8 1.0815 0.5738 2.7190 24 6 2.3639 -1.2088 3.5837 25 7 1.9421 -0.6500 4.8752 26 6 0.4661 -0.4935 4.9310 27 6 0.1745 -0.4202 6.4509 28 6 1.1827 -1.4302 7.0454 29 6 2.2933 -1.5605 5.9866 30 1 -0.3633 -1.0275 0.0182 31 1 -0.3633 0.5295 0.8807 32 1 -0.3633 0.4980 -0.8990 33 1 0.3663 -1.5453 -2.1103 34 1 2.2858 -0.0980 -3.8159 35 1 2.2155 -1.8692 -3.6538 36 1 1.8039 -1.1953 -6.2301 37 1 -0.4924 -1.4604 -10.1064 38 1 1.4504 -2.7735 -0.6617 39 1 3.1311 -2.6577 -1.2830 40 1 3.9135 -1.5619 0.7090 41 1 2.7180 -2.7054 1.3905 42 1 2.0112 -2.2368 3.5005 43 1 3.4517 -1.1913 3.5178 44 1 0.1578 0.4270 4.4353 45 1 -0.0293 -1.3562 4.4854 46 1 -0.8496 -0.7275 6.6625 47 1 0.3638 0.5834 6.8320 48 1 0.7008 -2.3942 7.2088 49 1 1.5939 -1.0486 7.9801 50 1 2.3422 -2.5873 5.6242 51 1 3.2536 -1.2715 6.4140 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725605602.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:50:19 Heat of formation + Delta-G solvation = -40.945794 kcal Electronic energy + Delta-G solvation = -29644.805285 eV Core-core repulsion = 25579.671713 eV Total energy + Delta-G solvation = -4065.133572 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.73223 -39.30171 -38.42385 -37.55115 -34.87222 -33.89391 -32.78705 -31.70641 -31.25528 -30.73547 -29.12996 -27.26263 -26.48400 -25.21941 -23.67844 -23.13739 -21.70417 -21.19407 -20.42166 -19.45332 -19.07561 -18.45722 -17.42095 -16.58247 -16.52318 -16.16231 -15.70920 -15.59858 -15.24115 -15.01182 -14.82673 -14.21556 -14.08469 -13.85579 -13.70561 -13.32757 -13.14868 -13.02958 -12.84472 -12.76850 -12.59479 -12.46951 -12.38501 -12.28482 -12.02062 -11.90269 -11.70560 -11.64400 -11.55361 -11.19616 -11.17443 -10.96398 -10.91333 -10.83309 -10.62166 -10.00170 -9.70565 -9.60209 -8.86276 -8.74634 -8.63590 -8.23555 -8.18012 -6.33507 -3.85143 2.43716 2.59874 3.00005 3.03671 3.12789 3.66530 3.70306 3.93641 4.07478 4.09515 4.25844 4.31714 4.44140 4.58788 4.61555 4.71753 4.83339 4.86921 4.95312 4.96913 4.98100 5.05497 5.17345 5.19081 5.21542 5.32035 5.43640 5.45828 5.48030 5.52070 5.57450 5.61454 5.68281 5.72346 5.73774 5.81885 5.84981 5.90316 6.03433 6.10848 6.36135 6.52204 6.54686 6.59349 7.00525 7.32660 7.45875 7.55296 8.02176 8.11799 8.56727 8.92385 9.39563 9.79326 10.79571 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.034586 B = 0.001846 C = 0.001794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.385095 B =15163.235928 C =15601.989718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.146 3.854 3 H 0.078 0.922 4 C 0.082 3.918 5 H 0.094 0.906 6 N -0.653 5.653 7 C 0.048 3.952 8 C 0.449 3.551 9 O -0.564 6.564 10 N -0.590 5.590 11 C -0.306 4.306 12 H 0.120 0.880 13 C 0.041 3.959 14 N -0.880 5.880 15 Si 0.880 3.120 16 H -0.271 1.271 17 H -0.276 1.276 18 H -0.269 1.269 19 C -0.166 4.166 20 C 0.101 3.899 21 N -0.617 5.617 22 C 0.530 3.470 23 O -0.520 6.520 24 C 0.032 3.968 25 N -0.502 5.502 26 C 0.031 3.969 27 C -0.126 4.126 28 C -0.131 4.131 29 C 0.034 3.966 30 H 0.047 0.953 31 H 0.059 0.941 32 H 0.088 0.912 33 H 0.356 0.644 34 H 0.088 0.912 35 H 0.046 0.954 36 H 0.370 0.630 37 H 0.273 0.727 38 H 0.080 0.920 39 H 0.085 0.915 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.062 0.938 43 H 0.103 0.897 44 H 0.113 0.887 45 H 0.037 0.963 46 H 0.070 0.930 47 H 0.075 0.925 48 H 0.066 0.934 49 H 0.072 0.928 50 H 0.044 0.956 51 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.427 -3.793 27.771 30.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.042 3.958 3 H 0.096 0.904 4 C -0.030 4.030 5 H 0.112 0.888 6 N -0.285 5.285 7 C -0.085 4.085 8 C 0.234 3.766 9 O -0.446 6.446 10 N -0.229 5.229 11 C -0.434 4.434 12 H 0.137 0.863 13 C -0.162 4.162 14 N -0.520 5.520 15 Si 0.707 3.293 16 H -0.197 1.197 17 H -0.202 1.202 18 H -0.195 1.195 19 C -0.206 4.206 20 C -0.022 4.022 21 N -0.353 5.353 22 C 0.318 3.682 23 O -0.395 6.395 24 C -0.099 4.099 25 N -0.227 5.227 26 C -0.096 4.096 27 C -0.165 4.165 28 C -0.170 4.170 29 C -0.094 4.094 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.106 0.894 33 H 0.177 0.823 34 H 0.107 0.893 35 H 0.064 0.936 36 H 0.203 0.797 37 H 0.084 0.916 38 H 0.099 0.901 39 H 0.104 0.896 40 H 0.090 0.910 41 H 0.092 0.908 42 H 0.080 0.920 43 H 0.121 0.879 44 H 0.131 0.869 45 H 0.055 0.945 46 H 0.089 0.911 47 H 0.093 0.907 48 H 0.084 0.916 49 H 0.091 0.909 50 H 0.062 0.938 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 11.359 -2.032 27.957 30.245 hybrid contribution 1.532 -2.076 -0.833 2.711 sum 12.892 -4.108 27.124 30.311 Atomic orbital electron populations 1.21932 0.93535 1.01982 1.03454 1.21499 0.95968 0.95538 0.82748 0.90433 1.22624 0.94923 0.93932 0.91503 0.88818 1.60036 1.15159 1.53769 0.99550 1.21755 0.96404 1.00951 0.89387 1.19683 0.89833 0.84062 0.82977 1.90575 1.19803 1.53657 1.80533 1.42201 1.08205 1.66429 1.06090 1.19431 0.90835 1.47550 0.85615 0.86272 1.25046 0.97975 0.97639 0.95511 1.69621 1.32106 1.48889 1.01424 0.86667 0.84627 0.78836 0.79209 1.19694 1.20159 1.19474 1.23572 1.02648 0.98841 0.95536 1.22267 0.95030 0.89101 0.95821 1.48630 1.50788 1.30670 1.05191 1.20038 0.80875 0.85312 0.82003 1.90649 1.37954 1.28495 1.82414 1.22202 1.02027 0.96414 0.89288 1.64689 1.14156 1.43144 1.00734 1.23536 0.86801 1.03088 0.96188 1.22531 0.98675 0.99904 0.95340 1.22398 0.96300 0.99705 0.98557 1.22933 0.99623 0.94686 0.92119 0.93413 0.92186 0.89351 0.82319 0.89336 0.93621 0.79708 0.91594 0.90119 0.89628 0.91011 0.90821 0.91987 0.87901 0.86862 0.94500 0.91110 0.90658 0.91565 0.90947 0.93814 0.90148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 8.27 37.16 0.31 -1.70 16 2 C 0.15 1.68 3.47 -66.95 -0.23 1.45 16 3 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 4 C 0.08 0.85 3.15 -65.88 -0.21 0.64 16 5 H 0.09 0.88 7.82 -51.93 -0.41 0.48 16 6 N -0.65 -9.09 4.39 -106.05 -0.47 -9.55 16 7 C 0.05 0.72 6.03 -4.98 -0.03 0.69 16 8 C 0.45 9.76 7.82 -10.98 -0.09 9.68 16 9 O -0.56 -14.70 15.78 5.55 0.09 -14.62 16 10 N -0.59 -13.63 5.09 -10.97 -0.06 -13.69 16 11 C -0.31 -8.52 10.16 -14.94 -0.15 -8.67 16 12 H 0.12 3.82 7.39 -52.49 -0.39 3.43 16 13 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 14 N -0.88 -25.49 13.96 55.50 0.77 -24.71 16 15 Si 0.88 18.99 27.73 -169.99 -4.71 14.28 16 16 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 17 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 18 H -0.27 -5.27 6.52 56.52 0.37 -4.90 16 19 C -0.17 -1.31 6.67 -24.58 -0.16 -1.48 16 20 C 0.10 0.70 6.69 -2.52 -0.02 0.68 16 21 N -0.62 -6.18 3.08 -163.01 -0.50 -6.68 16 22 C 0.53 6.00 7.34 -10.99 -0.08 5.92 16 23 O -0.52 -7.65 12.44 5.55 0.07 -7.58 16 24 C 0.03 0.27 4.52 -4.97 -0.02 0.25 16 25 N -0.50 -4.81 5.26 -231.89 -1.22 -6.03 16 26 C 0.03 0.31 5.30 -1.90 -0.01 0.30 16 27 C -0.13 -0.99 7.06 -24.87 -0.18 -1.16 16 28 C -0.13 -0.84 6.93 -25.37 -0.18 -1.02 16 29 C 0.03 0.24 6.69 -2.76 -0.02 0.22 16 30 H 0.05 0.62 7.98 -51.93 -0.41 0.21 16 31 H 0.06 0.87 6.77 -51.93 -0.35 0.52 16 32 H 0.09 1.33 7.41 -51.93 -0.38 0.94 16 33 H 0.36 5.24 7.45 -39.29 -0.29 4.95 16 34 H 0.09 1.20 8.08 -51.93 -0.42 0.78 16 35 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.37 7.45 5.76 -40.82 -0.24 7.22 16 37 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 38 H 0.08 0.70 7.77 -51.93 -0.40 0.30 16 39 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.07 0.40 7.47 -51.93 -0.39 0.01 16 42 H 0.06 0.44 7.52 -51.93 -0.39 0.05 16 43 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 44 H 0.11 1.43 5.97 -51.93 -0.31 1.12 16 45 H 0.04 0.37 8.02 -51.93 -0.42 -0.04 16 46 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 48 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 49 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 50 H 0.04 0.27 7.57 -51.93 -0.39 -0.13 16 51 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 396.78 15.07 5.98 5.98 Total: -1.00 -33.67 396.78 -9.80 -43.47 By element: Atomic # 1 Polarization: 20.91 SS G_CDS: -8.59 Total: 12.32 kcal Atomic # 6 Polarization: 7.98 SS G_CDS: -1.16 Total: 6.82 kcal Atomic # 7 Polarization: -59.19 SS G_CDS: -1.47 Total: -60.66 kcal Atomic # 8 Polarization: -22.36 SS G_CDS: 0.16 Total: -22.20 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -4.71 Total: 14.28 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -33.67 -9.80 -43.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725605602.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.522 kcal (2) G-P(sol) polarization free energy of solvation -33.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds