Wall clock time and date at job start Tue Mar 31 2020 21:50:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 109.86958 * 2 1 4 4 C 1.54320 * 109.88409 * 238.98538 * 2 1 3 5 5 H 1.09002 * 110.72273 * 144.07646 * 4 2 1 6 6 N 1.46904 * 110.71798 * 20.98627 * 4 2 1 7 7 C 1.46899 * 111.00029 * 155.00152 * 6 4 2 8 8 C 1.50703 * 109.47107 * 179.97438 * 7 6 4 9 9 O 1.21286 * 120.00016 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00161 * 180.02562 * 8 7 6 11 11 C 1.37091 * 120.00108 * 180.02562 * 10 8 7 12 12 H 1.07995 * 120.00333 * 359.97438 * 11 10 8 13 13 C 1.38953 * 119.99712 * 179.97438 * 11 10 8 14 14 N 1.31413 * 119.99793 * 179.97438 * 13 11 10 15 15 Si 1.86790 * 120.00276 * 359.97438 * 13 11 10 16 16 H 1.48506 * 109.47428 * 90.00011 * 15 13 11 17 17 H 1.48508 * 109.47300 * 209.99991 * 15 13 11 18 18 H 1.48504 * 109.47120 * 329.99721 * 15 13 11 19 19 C 1.55152 * 102.94371 * 262.62453 * 4 2 1 20 20 C 1.54914 * 101.58048 * 324.49447 * 19 4 2 21 21 N 1.47021 * 110.01061 * 121.09669 * 2 1 3 22 22 C 1.34770 * 125.65143 * 300.51574 * 21 2 1 23 23 O 1.21284 * 120.00319 * 359.97438 * 22 21 2 24 24 C 1.50701 * 119.99939 * 180.02562 * 22 21 2 25 25 N 1.46905 * 109.46899 * 180.02562 * 24 22 21 26 26 C 1.48531 * 111.00354 * 52.60341 * 25 24 22 27 27 C 1.54933 * 103.22975 * 159.72049 * 26 25 24 28 28 C 1.54597 * 102.92050 * 322.58538 * 27 26 25 29 29 C 1.47901 * 110.99866 * 169.99875 * 25 24 22 30 30 H 1.09002 * 109.46955 * 181.01418 * 1 2 3 31 31 H 1.09000 * 109.47040 * 301.01607 * 1 2 3 32 32 H 1.09004 * 109.46801 * 61.01387 * 1 2 3 33 33 H 1.00908 * 110.99583 * 278.95064 * 6 4 2 34 34 H 1.09002 * 109.47043 * 299.99792 * 7 6 4 35 35 H 1.09001 * 109.47354 * 59.99854 * 7 6 4 36 36 H 0.97005 * 119.99463 * 359.97438 * 10 8 7 37 37 H 0.96996 * 120.00229 * 180.02562 * 14 13 11 38 38 H 1.08992 * 111.00972 * 82.57068 * 19 4 2 39 39 H 1.09001 * 111.00462 * 206.42517 * 19 4 2 40 40 H 1.09004 * 110.36844 * 278.17490 * 20 19 4 41 41 H 1.08991 * 110.46194 * 155.89464 * 20 19 4 42 42 H 1.09005 * 109.46940 * 299.99406 * 24 22 21 43 43 H 1.08991 * 109.47717 * 59.99937 * 24 22 21 44 44 H 1.09003 * 110.66692 * 278.15507 * 26 25 24 45 45 H 1.09000 * 110.66645 * 41.28435 * 26 25 24 46 46 H 1.08996 * 110.72780 * 204.22405 * 27 26 25 47 47 H 1.09004 * 110.72433 * 80.93754 * 27 26 25 48 48 H 1.09002 * 110.31003 * 263.04024 * 28 27 26 49 49 H 1.09005 * 110.30713 * 140.87416 * 28 27 26 50 50 H 1.08998 * 109.91825 * 333.50875 * 29 25 24 51 51 H 1.09005 * 109.91692 * 94.60530 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0252 0.0000 4 6 2.0549 -0.7477 -1.2437 5 1 2.9625 -0.2773 -1.6221 6 7 1.0253 -0.8026 -2.2901 7 6 1.6329 -0.9485 -3.6195 8 6 0.5484 -1.0017 -4.6645 9 8 -0.6162 -0.9261 -4.3342 10 7 0.8724 -1.1344 -5.9660 11 6 -0.1141 -1.1823 -6.9166 12 1 -1.1511 -1.1141 -6.6227 13 6 0.2201 -1.3185 -8.2585 14 7 -0.7257 -1.3649 -9.1697 15 14 2.0136 -1.4357 -8.7671 16 1 2.4342 -2.8600 -8.7741 17 1 2.1809 -0.8636 -10.1272 18 1 2.8517 -0.6768 -7.8043 19 6 2.3557 -2.1673 -0.6946 20 6 2.8618 -1.8473 0.7341 21 7 2.0331 -0.7135 1.1829 22 6 1.7794 -0.3851 2.4652 23 8 1.0815 0.5738 2.7190 24 6 2.3639 -1.2088 3.5837 25 7 1.9421 -0.6500 4.8752 26 6 0.4661 -0.4935 4.9310 27 6 0.1745 -0.4202 6.4509 28 6 1.1827 -1.4302 7.0454 29 6 2.2933 -1.5605 5.9866 30 1 -0.3633 -1.0275 0.0182 31 1 -0.3633 0.5295 0.8807 32 1 -0.3633 0.4980 -0.8990 33 1 0.3663 -1.5453 -2.1103 34 1 2.2858 -0.0980 -3.8159 35 1 2.2155 -1.8692 -3.6538 36 1 1.8039 -1.1953 -6.2301 37 1 -0.4924 -1.4604 -10.1064 38 1 1.4504 -2.7735 -0.6617 39 1 3.1311 -2.6577 -1.2830 40 1 3.9135 -1.5619 0.7090 41 1 2.7180 -2.7054 1.3905 42 1 2.0112 -2.2368 3.5005 43 1 3.4517 -1.1913 3.5178 44 1 0.1578 0.4270 4.4353 45 1 -0.0293 -1.3562 4.4854 46 1 -0.8496 -0.7275 6.6625 47 1 0.3638 0.5834 6.8320 48 1 0.7008 -2.3942 7.2088 49 1 1.5939 -1.0486 7.9801 50 1 2.3422 -2.5873 5.6242 51 1 3.2536 -1.2715 6.4140 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725605602.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:50:18 Heat of formation + Delta-G solvation = -68.070959 kcal Electronic energy + Delta-G solvation = -29645.981521 eV Core-core repulsion = 25579.671713 eV Total energy + Delta-G solvation = -4066.309807 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.54204 -40.37204 -39.77414 -38.45392 -36.20421 -35.57458 -33.74429 -33.47838 -32.11151 -31.64560 -29.74160 -28.50300 -27.39662 -26.43510 -25.14521 -23.85279 -22.40396 -21.74193 -21.32121 -21.18365 -20.30698 -19.91004 -18.28250 -17.65824 -17.33117 -17.28406 -16.89960 -16.55167 -16.38735 -16.15773 -15.86401 -15.50157 -15.00298 -14.92569 -14.63777 -14.54794 -14.43047 -14.20793 -13.91726 -13.83728 -13.64140 -13.44386 -13.35803 -13.08651 -13.03429 -12.99747 -12.74088 -12.51754 -12.48697 -12.39661 -12.21020 -11.97834 -11.87882 -11.79861 -11.68599 -11.49179 -11.46746 -10.58895 -10.40607 -10.23358 -9.66513 -9.41107 -9.26029 -8.39895 -6.01003 1.31707 1.37255 1.46508 1.61831 1.82955 1.98818 2.24797 2.74796 3.04004 3.16946 3.30681 3.42669 3.63094 3.74479 3.78761 3.96190 4.05855 4.08785 4.14803 4.21770 4.25611 4.31682 4.36618 4.39041 4.45032 4.51506 4.60541 4.62548 4.67093 4.73177 4.74283 4.78712 4.93082 4.98484 5.01456 5.08949 5.11375 5.12699 5.22524 5.29575 5.39208 5.43824 5.54302 5.85421 5.92559 5.96074 6.07320 6.35485 6.55877 6.61479 6.90186 7.20538 7.41989 7.99475 8.77884 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.034586 B = 0.001846 C = 0.001794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.385095 B =15163.235928 C =15601.989718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.146 3.854 3 H 0.063 0.937 4 C 0.088 3.912 5 H 0.115 0.885 6 N -0.675 5.675 7 C 0.064 3.936 8 C 0.447 3.553 9 O -0.616 6.616 10 N -0.590 5.590 11 C -0.329 4.329 12 H 0.053 0.947 13 C -0.017 4.017 14 N -0.936 5.936 15 Si 0.967 3.033 16 H -0.255 1.255 17 H -0.278 1.278 18 H -0.229 1.229 19 C -0.158 4.158 20 C 0.100 3.900 21 N -0.615 5.615 22 C 0.520 3.480 23 O -0.565 6.565 24 C 0.039 3.961 25 N -0.523 5.523 26 C 0.033 3.967 27 C -0.126 4.126 28 C -0.128 4.128 29 C 0.034 3.966 30 H 0.045 0.955 31 H 0.038 0.962 32 H 0.065 0.935 33 H 0.347 0.653 34 H 0.116 0.884 35 H 0.087 0.913 36 H 0.391 0.609 37 H 0.278 0.722 38 H 0.070 0.930 39 H 0.112 0.888 40 H 0.097 0.903 41 H 0.096 0.904 42 H 0.082 0.918 43 H 0.127 0.873 44 H 0.079 0.921 45 H 0.031 0.969 46 H 0.078 0.922 47 H 0.067 0.933 48 H 0.077 0.923 49 H 0.082 0.918 50 H 0.058 0.942 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.583 -5.663 29.141 34.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.041 3.959 3 H 0.081 0.919 4 C -0.023 4.023 5 H 0.133 0.867 6 N -0.307 5.307 7 C -0.067 4.067 8 C 0.235 3.765 9 O -0.501 6.501 10 N -0.232 5.232 11 C -0.458 4.458 12 H 0.071 0.929 13 C -0.216 4.216 14 N -0.577 5.577 15 Si 0.787 3.213 16 H -0.180 1.180 17 H -0.203 1.203 18 H -0.152 1.152 19 C -0.198 4.198 20 C -0.022 4.022 21 N -0.350 5.350 22 C 0.309 3.691 23 O -0.444 6.444 24 C -0.092 4.092 25 N -0.248 5.248 26 C -0.094 4.094 27 C -0.164 4.164 28 C -0.166 4.166 29 C -0.093 4.093 30 H 0.064 0.936 31 H 0.058 0.942 32 H 0.084 0.916 33 H 0.168 0.832 34 H 0.134 0.866 35 H 0.105 0.895 36 H 0.226 0.774 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.130 0.870 40 H 0.115 0.885 41 H 0.114 0.886 42 H 0.099 0.901 43 H 0.144 0.856 44 H 0.097 0.903 45 H 0.049 0.951 46 H 0.096 0.904 47 H 0.086 0.914 48 H 0.096 0.904 49 H 0.101 0.899 50 H 0.077 0.923 51 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 16.563 -3.923 29.357 33.935 hybrid contribution -0.246 -1.449 -1.190 1.891 sum 16.317 -5.372 28.167 32.993 Atomic orbital electron populations 1.21749 0.95611 1.01086 1.01220 1.21373 0.94242 0.95659 0.84595 0.91863 1.22629 0.94245 0.95776 0.89674 0.86677 1.59948 1.16595 1.54021 1.00122 1.21668 0.93806 1.04068 0.87206 1.21086 0.90866 0.80932 0.83617 1.90558 1.22970 1.55069 1.81490 1.42015 1.08110 1.67247 1.05869 1.18997 0.89499 1.49730 0.87608 0.92923 1.26159 1.04703 0.96107 0.94601 1.69815 1.35722 1.50043 1.02125 0.85336 0.76725 0.80098 0.79157 1.17975 1.20349 1.15169 1.23538 1.03103 0.96828 0.96286 1.22541 0.95582 0.88590 0.95438 1.48677 1.50700 1.31259 1.04371 1.20716 0.80315 0.85097 0.82938 1.90650 1.39942 1.30610 1.83178 1.22244 1.03057 0.96367 0.87559 1.64651 1.13412 1.44772 1.01998 1.23344 0.87661 1.01124 0.97276 1.22520 0.99761 1.00222 0.93898 1.22411 0.95711 0.99711 0.98734 1.23010 1.00044 0.94948 0.91344 0.93582 0.94241 0.91617 0.83241 0.86636 0.89541 0.77372 0.91214 0.91171 0.86966 0.88478 0.88603 0.90070 0.85550 0.90286 0.95072 0.90366 0.91393 0.90417 0.89925 0.92347 0.89270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.90 8.27 71.98 0.60 -3.30 16 2 C 0.15 3.26 3.47 45.34 0.16 3.42 16 3 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 4 C 0.09 1.56 3.15 46.10 0.15 1.70 16 5 H 0.12 1.62 7.82 -2.39 -0.02 1.60 16 6 N -0.67 -17.74 4.39 -489.44 -2.15 -19.89 16 7 C 0.06 1.73 6.03 85.56 0.52 2.24 16 8 C 0.45 19.29 7.82 87.66 0.69 19.97 16 9 O -0.62 -33.55 15.78 -3.05 -0.05 -33.60 16 10 N -0.59 -26.88 5.09 -306.99 -1.56 -28.44 16 11 C -0.33 -19.07 10.16 84.04 0.85 -18.22 16 12 H 0.05 3.67 7.39 -2.91 -0.02 3.65 16 13 C -0.02 -0.95 5.50 84.93 0.47 -0.49 16 14 N -0.94 -56.29 13.96 21.66 0.30 -55.99 16 15 Si 0.97 37.80 27.73 68.60 1.90 39.70 16 16 H -0.26 -9.35 7.11 99.48 0.71 -8.64 16 17 H -0.28 -10.95 7.11 99.48 0.71 -10.24 16 18 H -0.23 -7.37 6.52 99.48 0.65 -6.72 16 19 C -0.16 -1.84 6.67 31.99 0.21 -1.63 16 20 C 0.10 0.95 6.69 86.86 0.58 1.54 16 21 N -0.62 -11.23 3.08 -788.04 -2.43 -13.66 16 22 C 0.52 11.41 7.34 87.66 0.64 12.05 16 23 O -0.57 -17.45 12.44 -3.04 -0.04 -17.49 16 24 C 0.04 0.56 4.52 85.56 0.39 0.95 16 25 N -0.52 -9.36 5.26 -887.57 -4.67 -14.03 16 26 C 0.03 0.69 5.30 86.65 0.46 1.15 16 27 C -0.13 -1.92 7.06 31.80 0.22 -1.70 16 28 C -0.13 -1.38 6.93 31.47 0.22 -1.16 16 29 C 0.03 0.39 6.69 86.45 0.58 0.97 16 30 H 0.05 1.26 7.98 -2.39 -0.02 1.25 16 31 H 0.04 1.25 6.77 -2.39 -0.02 1.23 16 32 H 0.06 2.12 7.41 -2.38 -0.02 2.10 16 33 H 0.35 10.09 7.45 -89.69 -0.67 9.43 16 34 H 0.12 2.57 8.08 -2.39 -0.02 2.55 16 35 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.39 14.40 5.76 -92.70 -0.53 13.87 16 37 H 0.28 15.29 8.31 -92.71 -0.77 14.52 16 38 H 0.07 1.01 7.77 -2.39 -0.02 0.99 16 39 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.10 0.53 8.14 -2.38 -0.02 0.51 16 41 H 0.10 0.55 7.47 -2.39 -0.02 0.53 16 42 H 0.08 0.88 7.52 -2.38 -0.02 0.86 16 43 H 0.13 1.23 8.14 -2.39 -0.02 1.22 16 44 H 0.08 2.18 5.97 -2.39 -0.01 2.16 16 45 H 0.03 0.64 8.02 -2.39 -0.02 0.62 16 46 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 47 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 48 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 49 H 0.08 0.73 8.14 -2.38 -0.02 0.71 16 50 H 0.06 0.51 7.57 -2.39 -0.02 0.49 16 51 H 0.09 0.88 8.14 -2.38 -0.02 0.86 16 Total: -1.00 -83.28 396.78 -2.29 -85.57 By element: Atomic # 1 Polarization: 40.66 SS G_CDS: -0.32 Total: 40.33 kcal Atomic # 6 Polarization: 10.76 SS G_CDS: 6.73 Total: 17.49 kcal Atomic # 7 Polarization: -121.50 SS G_CDS: -10.51 Total: -132.01 kcal Atomic # 8 Polarization: -51.00 SS G_CDS: -0.09 Total: -51.09 kcal Atomic # 14 Polarization: 37.80 SS G_CDS: 1.90 Total: 39.70 kcal Total: -83.28 -2.29 -85.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725605602.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.498 kcal (2) G-P(sol) polarization free energy of solvation -83.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds