Wall clock time and date at job start Tue Mar 31 2020 22:49:10
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42898 * 1
3 3 C 1.42904 * 113.99728 * 2 1
4 4 C 1.52998 * 109.46966 * 179.97438 * 3 2 1
5 5 C 1.53001 * 109.46935 * 179.97438 * 4 3 2
6 6 N 1.46501 * 109.47070 * 176.83053 * 5 4 3
7 7 C 1.36736 * 127.13756 * 90.12243 * 6 5 4
8 8 C 1.50697 * 126.34626 * 0.02562 * 7 6 5
9 9 H 1.09003 * 109.87415 * 343.99696 * 8 7 6
10 10 C 1.54097 * 109.87811 * 105.00257 * 8 7 6
11 11 C 1.54811 * 104.18757 * 121.45461 * 10 8 7
12 12 C 1.54995 * 102.09499 * 20.88306 * 11 10 8
13 13 O 1.43749 * 109.88147 * 222.83275 * 8 7 6
14 14 N 1.30292 * 107.30894 * 180.02562 * 7 6 5
15 15 N 1.28531 * 110.05341 * 359.97438 * 14 7 6
16 16 C 1.31221 * 109.86087 * 359.97438 * 15 14 7
17 17 N 1.38580 * 126.47801 * 180.02562 * 16 15 14
18 18 C 1.46908 * 110.99488 * 306.61242 * 17 16 15
19 19 C 1.46901 * 111.00105 * 70.56012 * 17 16 15
20 20 H 1.08997 * 109.46502 * 55.00586 * 19 17 16
21 21 C 1.52995 * 109.47424 * 295.00622 * 19 17 16
22 22 C 1.50693 * 109.47066 * 175.00170 * 19 17 16
23 23 H 1.08010 * 120.00257 * 0.02562 * 22 19 17
24 24 C 1.37876 * 120.00106 * 180.02562 * 22 19 17
25 25 N 1.31511 * 120.00036 * 0.02562 * 24 22 19
26 26 Si 1.86804 * 120.00080 * 180.02562 * 24 22 19
27 27 H 1.48493 * 109.47137 * 0.02562 * 26 24 22
28 28 H 1.48499 * 109.46976 * 120.00261 * 26 24 22
29 29 H 1.48499 * 109.47108 * 239.99919 * 26 24 22
30 30 H 1.09000 * 109.46823 * 180.02562 * 1 2 3
31 31 H 1.09003 * 109.47043 * 299.99643 * 1 2 3
32 32 H 1.08995 * 109.47600 * 60.00119 * 1 2 3
33 33 H 1.09007 * 109.46997 * 60.00095 * 3 2 1
34 34 H 1.08991 * 109.47201 * 300.00207 * 3 2 1
35 35 H 1.09007 * 109.47053 * 60.00291 * 4 3 2
36 36 H 1.08991 * 109.47462 * 300.00209 * 4 3 2
37 37 H 1.08997 * 109.46912 * 56.83762 * 5 4 3
38 38 H 1.08996 * 109.47746 * 296.83436 * 5 4 3
39 39 H 1.08999 * 110.48991 * 240.13027 * 10 8 7
40 40 H 1.08992 * 110.49010 * 2.77713 * 10 8 7
41 41 H 1.09002 * 110.90736 * 139.07851 * 11 10 8
42 42 H 1.08998 * 110.90964 * 262.64337 * 11 10 8
43 43 H 1.09001 * 110.62091 * 81.47104 * 12 11 10
44 44 H 1.08997 * 110.61985 * 204.48154 * 12 11 10
45 45 H 1.08997 * 109.47118 * 54.78631 * 18 17 16
46 46 H 1.09000 * 109.46690 * 174.78835 * 18 17 16
47 47 H 1.09000 * 109.46680 * 294.78314 * 18 17 16
48 48 H 1.09000 * 109.47511 * 59.99641 * 21 19 17
49 49 H 1.08999 * 109.47298 * 179.97438 * 21 19 17
50 50 H 1.09003 * 109.47159 * 300.00223 * 21 19 17
51 51 H 0.97002 * 120.00352 * 180.02562 * 25 24 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0102 1.3055 0.0000
4 6 3.5354 1.1847 0.0006
5 6 4.1576 2.5825 0.0000
6 7 5.6161 2.4678 0.0770
7 6 6.4936 2.3803 -0.9680
8 6 6.1409 2.3841 -2.4331
9 1 5.0768 2.1834 -2.5587
10 6 6.4932 3.7500 -3.0534
11 6 7.4922 3.4065 -4.1850
12 6 7.1880 1.9088 -4.4432
13 8 6.9139 1.3887 -3.1246
14 7 7.6912 2.2930 -0.4623
15 7 7.6306 2.3198 0.8213
16 6 6.3808 2.4270 1.2065
17 7 5.9236 2.4866 2.5133
18 6 6.4312 1.3549 3.3006
19 6 6.2829 3.7663 3.1389
20 1 5.9110 4.5873 2.5260
21 6 7.8050 3.8668 3.2570
22 6 5.6663 3.8449 4.5117
23 1 5.0677 3.0260 4.8826
24 6 5.8662 4.9623 5.2942
25 7 6.5946 5.9597 4.8425
26 14 5.1024 5.0595 6.9962
27 1 4.3356 3.8169 7.2663
28 1 6.1749 5.2095 8.0123
29 1 4.1900 6.2292 7.0633
30 1 -0.3633 -1.0277 0.0005
31 1 -0.3633 0.5138 0.8900
32 1 -0.3634 0.5138 -0.8899
33 1 1.6885 1.8464 0.8901
34 1 1.6885 1.8464 -0.8899
35 1 3.8574 0.6437 -0.8892
36 1 3.8567 0.6440 0.8907
37 1 3.7915 3.1435 0.8598
38 1 3.8820 3.1026 -0.9174
39 1 5.6014 4.2245 -3.4628
40 1 6.9638 4.3957 -2.3120
41 1 7.2919 4.0031 -5.0750
42 1 8.5206 3.5432 -3.8508
43 1 6.3158 1.7998 -5.0878
44 1 8.0539 1.4110 -4.8797
45 1 7.5187 1.3246 3.2338
46 1 6.1344 1.4750 4.3425
47 1 6.0170 0.4256 2.9096
48 1 8.2510 3.8099 2.2641
49 1 8.0715 4.8165 3.7207
50 1 8.1769 3.0456 3.8698
51 1 6.7356 6.7457 5.3932
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001730706205.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:49:10
Heat of formation + Delta-G solvation = 5.485184 kcal
Electronic energy + Delta-G solvation = -31147.665602 eV
Core-core repulsion = 27084.545428 eV
Total energy + Delta-G solvation = -4063.120174 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.211 amu
Computer time = 6.41 seconds
Orbital eigenvalues (eV)
-42.56667 -39.40080 -38.19541 -37.17212 -35.59641 -32.90750 -32.32430 -31.83780
-30.88248 -28.85402 -27.74246 -27.34066 -25.54249 -25.19256 -25.07596 -23.54692
-22.28149 -21.72955 -21.33181 -20.25751 -19.45099 -17.27984 -16.57916 -16.42963
-16.37603 -16.31674 -16.07167 -15.61097 -15.32974 -15.14392 -14.69957 -14.52166
-14.38043 -13.77608 -13.65519 -13.51123 -13.06142 -12.70109 -12.48755 -12.32792
-12.10911 -11.92376 -11.81886 -11.50869 -11.42569 -11.35511 -11.24105 -11.16796
-11.08845 -10.94251 -10.92720 -10.78633 -10.54194 -10.20891 -10.14697 -10.02733
-9.86952 -9.80708 -9.72083 -8.90921 -8.50603 -8.44380 -7.69678 -6.09442
-4.15604 2.06849 2.54060 3.24967 3.27141 3.33486 3.37077 3.54258
3.89272 4.22704 4.32130 4.46821 4.56845 4.66069 4.66372 4.80938
4.90386 4.91792 4.95433 5.00917 5.12969 5.15255 5.16471 5.22787
5.27126 5.37481 5.42788 5.45361 5.51201 5.59798 5.75015 5.79683
5.84917 5.93843 5.96983 6.06597 6.20165 6.40374 6.47455 6.63441
6.69054 6.84573 6.92925 7.01818 7.06902 7.16313 7.51855 7.63968
7.74448 7.90760 8.24407 8.45194 8.88125 9.26895 9.49361 10.97319
Molecular weight = 338.21amu
Principal moments of inertia in cm(-1)
A = 0.008637 B = 0.003991 C = 0.002989
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3240.981580 B = 7014.932773 C = 9366.865954
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.032 3.968
2 O -0.391 6.391
3 C 0.067 3.933
4 C -0.132 4.132
5 C 0.117 3.883
6 N -0.465 5.465
7 C 0.150 3.850
8 C 0.178 3.822
9 H 0.081 0.919
10 C -0.146 4.146
11 C -0.151 4.151
12 C 0.046 3.954
13 O -0.353 6.353
14 N -0.266 5.266
15 N -0.314 5.314
16 C 0.384 3.616
17 N -0.470 5.470
18 C 0.045 3.955
19 C 0.224 3.776
20 H 0.035 0.965
21 C -0.173 4.173
22 C -0.507 4.507
23 H 0.067 0.933
24 C 0.062 3.938
25 N -0.888 5.888
26 Si 0.899 3.101
27 H -0.272 1.272
28 H -0.284 1.284
29 H -0.284 1.284
30 H 0.085 0.915
31 H 0.043 0.957
32 H 0.040 0.960
33 H 0.059 0.941
34 H 0.050 0.950
35 H 0.073 0.927
36 H 0.085 0.915
37 H 0.110 0.890
38 H 0.087 0.913
39 H 0.081 0.919
40 H 0.085 0.915
41 H 0.081 0.919
42 H 0.083 0.917
43 H 0.061 0.939
44 H 0.096 0.904
45 H 0.041 0.959
46 H 0.091 0.909
47 H 0.044 0.956
48 H 0.033 0.967
49 H 0.086 0.914
50 H 0.032 0.968
51 H 0.261 0.739
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.948 -6.046 -17.039 20.173
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.064 4.064
2 O -0.310 6.310
3 C -0.010 4.010
4 C -0.170 4.170
5 C -0.007 4.007
6 N -0.159 5.159
7 C -0.117 4.117
8 C 0.117 3.883
9 H 0.099 0.901
10 C -0.185 4.185
11 C -0.189 4.189
12 C -0.030 4.030
13 O -0.271 6.271
14 N -0.107 5.107
15 N -0.158 5.158
16 C 0.029 3.971
17 N -0.196 5.196
18 C -0.102 4.102
19 C 0.120 3.880
20 H 0.053 0.947
21 C -0.232 4.232
22 C -0.545 4.545
23 H 0.085 0.915
24 C -0.140 4.140
25 N -0.527 5.527
26 Si 0.727 3.273
27 H -0.196 1.196
28 H -0.210 1.210
29 H -0.211 1.211
30 H 0.103 0.897
31 H 0.062 0.938
32 H 0.058 0.942
33 H 0.077 0.923
34 H 0.068 0.932
35 H 0.092 0.908
36 H 0.104 0.896
37 H 0.128 0.872
38 H 0.105 0.895
39 H 0.100 0.900
40 H 0.104 0.896
41 H 0.099 0.901
42 H 0.102 0.898
43 H 0.079 0.921
44 H 0.114 0.886
45 H 0.059 0.941
46 H 0.109 0.891
47 H 0.063 0.937
48 H 0.052 0.948
49 H 0.104 0.896
50 H 0.051 0.949
51 H 0.071 0.929
Dipole moment (debyes) X Y Z Total
from point charges -7.727 -6.387 -16.816 19.578
hybrid contribution -1.336 0.817 0.888 1.801
sum -9.063 -5.570 -15.928 19.154
Atomic orbital electron populations
1.22740 0.80912 1.02743 1.00054 1.87879 1.19772 1.27856 1.95452
1.22370 0.93056 0.84896 1.00692 1.21799 0.93667 0.96811 1.04716
1.21637 0.76261 0.97903 1.04897 1.46189 1.08061 1.55515 1.06152
1.24121 0.87128 1.08988 0.91482 1.20587 0.95107 0.89104 0.83502
0.90098 1.22988 1.00242 0.96532 0.98689 1.23116 1.00875 0.96504
0.98364 1.23597 1.00754 0.93541 0.85152 1.89001 1.73434 1.39088
1.25571 1.73958 1.18527 1.15995 1.02245 1.74817 1.15820 1.21254
1.03910 1.22950 0.85535 0.99653 0.88974 1.59435 1.57756 1.07648
0.94786 1.22247 0.98709 0.90294 0.98952 1.19405 0.92471 0.82089
0.94084 0.94681 1.22432 0.98310 1.03107 0.99354 1.21045 1.31447
1.03231 0.98824 0.91509 1.24908 0.95161 0.95485 0.98417 1.69919
1.38645 1.06855 1.37262 0.86417 0.78965 0.78039 0.83850 1.19635
1.20993 1.21059 0.89669 0.93830 0.94151 0.92310 0.93186 0.90805
0.89593 0.87173 0.89455 0.90031 0.89616 0.90070 0.89827 0.92053
0.88587 0.94064 0.89063 0.93693 0.94830 0.89576 0.94904 0.92854
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.26 11.01 101.05 1.11 1.38 16
2 O -0.39 -4.62 10.70 -35.23 -0.38 -5.00 16
3 C 0.07 0.69 5.94 37.16 0.22 0.92 16
4 C -0.13 -1.61 5.91 -26.73 -0.16 -1.76 16
5 C 0.12 1.52 5.83 -4.04 -0.02 1.49 16
6 N -0.46 -8.05 2.81 -114.09 -0.32 -8.37 16
7 C 0.15 2.61 6.75 -154.02 -1.04 1.57 16
8 C 0.18 2.30 3.75 -27.31 -0.10 2.20 16
9 H 0.08 0.86 7.35 -51.93 -0.38 0.48 16
10 C -0.15 -1.55 6.63 -25.20 -0.17 -1.72 16
11 C -0.15 -1.36 7.15 -24.72 -0.18 -1.54 16
12 C 0.05 0.43 7.72 38.21 0.29 0.73 16
13 O -0.35 -4.94 11.17 -35.23 -0.39 -5.34 16
14 N -0.27 -5.61 12.18 32.99 0.40 -5.21 16
15 N -0.31 -7.14 9.73 30.32 0.29 -6.84 16
16 C 0.38 8.07 6.21 -318.86 -1.98 6.09 16
17 N -0.47 -10.19 4.77 -176.08 -0.84 -11.03 16
18 C 0.05 0.92 8.66 60.07 0.52 1.44 16
19 C 0.22 5.60 2.31 -68.87 -0.16 5.45 16
20 H 0.04 0.97 8.11 -51.93 -0.42 0.55 16
21 C -0.17 -4.41 8.20 37.15 0.30 -4.11 16
22 C -0.51 -13.27 7.81 -34.44 -0.27 -13.53 16
23 H 0.07 1.72 6.81 -52.48 -0.36 1.36 16
24 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16
25 N -0.89 -24.82 11.32 55.43 0.63 -24.19 16
26 Si 0.90 20.61 29.54 -169.99 -5.02 15.59 16
27 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16
28 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16
29 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16
30 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16
31 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16
32 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16
33 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16
34 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16
35 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16
36 H 0.09 1.26 8.14 -51.93 -0.42 0.83 16
37 H 0.11 1.54 8.14 -51.93 -0.42 1.12 16
38 H 0.09 0.85 7.54 -51.93 -0.39 0.46 16
39 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16
40 H 0.09 1.11 7.69 -51.93 -0.40 0.71 16
41 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16
42 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16
43 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16
44 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16
45 H 0.04 0.87 6.54 -51.93 -0.34 0.53 16
46 H 0.09 1.87 6.29 -51.93 -0.33 1.54 16
47 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16
48 H 0.03 0.85 5.95 -51.93 -0.31 0.54 16
49 H 0.09 2.39 6.07 -51.93 -0.32 2.07 16
50 H 0.03 0.81 6.60 -51.93 -0.34 0.47 16
51 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16
LS Contribution 403.96 15.07 6.09 6.09
Total: -1.00 -32.78 403.96 -9.90 -42.67
By element:
Atomic # 1 Polarization: 10.10 SS G_CDS: -8.64 Total: 1.46 kcal
Atomic # 6 Polarization: 1.89 SS G_CDS: -1.72 Total: 0.17 kcal
Atomic # 7 Polarization: -55.81 SS G_CDS: 0.16 Total: -55.64 kcal
Atomic # 8 Polarization: -9.56 SS G_CDS: -0.77 Total: -10.33 kcal
Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal
Total LS contribution 6.09 Total: 6.09 kcal
Total: -32.78 -9.90 -42.67 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001730706205.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 48.157 kcal
(2) G-P(sol) polarization free energy of solvation -32.777 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.381 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.895 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.672 kcal
(6) G-S(sol) free energy of system = (1) + (5) 5.485 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 6.42 seconds