Wall clock time and date at job start Tue Mar 31 2020 22:43:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46639 * 2 1 4 4 N 1.46497 * 109.47269 * 119.99678 * 2 1 3 5 5 C 1.36933 * 120.00052 * 281.78946 * 4 2 1 6 6 H 1.08004 * 120.00276 * 359.97438 * 5 4 2 7 7 C 1.38814 * 120.00119 * 180.02562 * 5 4 2 8 8 N 1.31619 * 119.99820 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00214 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47143 * 89.99976 * 9 7 5 11 11 H 1.48504 * 109.47221 * 209.99785 * 9 7 5 12 12 H 1.48491 * 109.47066 * 329.99862 * 9 7 5 13 13 C 1.52992 * 109.47152 * 240.00059 * 2 1 3 14 14 H 1.09000 * 109.58698 * 293.06549 * 13 2 1 15 15 C 1.53193 * 109.70785 * 53.41980 * 13 2 1 16 16 C 1.53038 * 109.31625 * 174.49104 * 15 13 2 17 17 C 1.53038 * 109.53903 * 298.63837 * 16 15 13 18 18 C 1.52760 * 109.38461 * 61.23672 * 17 16 15 19 19 N 1.46925 * 109.00905 * 305.58872 * 18 17 16 20 20 C 1.34770 * 120.62868 * 233.58226 * 19 18 17 21 21 O 1.21287 * 119.99929 * 173.91812 * 20 19 18 22 22 C 1.50694 * 120.00406 * 353.92567 * 20 19 18 23 23 N 1.46897 * 109.47298 * 179.97438 * 22 20 19 24 24 C 1.47195 * 111.00045 * 188.93329 * 23 22 20 25 25 C 1.52983 * 108.72983 * 167.63061 * 24 23 22 26 26 N 1.46003 * 110.03925 * 50.29755 * 25 24 23 27 27 C 1.33578 * 122.88849 * 341.73672 * 26 25 24 28 28 O 1.21281 * 118.52041 * 181.76665 * 27 26 25 29 29 C 1.46895 * 111.00233 * 66.04426 * 23 22 20 30 30 H 1.08997 * 109.47015 * 173.76860 * 1 2 3 31 31 H 1.08997 * 109.47228 * 293.77142 * 1 2 3 32 32 H 1.09002 * 109.47221 * 53.77106 * 1 2 3 33 33 H 0.96997 * 119.99789 * 101.78429 * 4 2 1 34 34 H 0.97001 * 119.99983 * 179.97438 * 8 7 5 35 35 H 1.09005 * 109.49982 * 294.44462 * 15 13 2 36 36 H 1.08997 * 109.49628 * 54.54046 * 15 13 2 37 37 H 1.09002 * 109.45782 * 58.65682 * 16 15 13 38 38 H 1.09003 * 109.46020 * 178.61471 * 16 15 13 39 39 H 1.08998 * 109.49497 * 181.31817 * 17 16 15 40 40 H 1.09004 * 109.49462 * 301.40803 * 17 16 15 41 41 H 1.09001 * 109.50718 * 185.70277 * 18 17 16 42 42 H 1.09000 * 109.43050 * 65.42424 * 18 17 16 43 43 H 1.09000 * 109.47315 * 59.99520 * 22 20 19 44 44 H 1.09002 * 109.46871 * 299.99985 * 22 20 19 45 45 H 1.08997 * 109.59565 * 287.40753 * 24 23 22 46 46 H 1.09001 * 109.59147 * 47.86239 * 24 23 22 47 47 H 1.08998 * 109.37204 * 170.46715 * 25 24 23 48 48 H 1.08994 * 109.38075 * 290.11895 * 25 24 23 49 49 H 0.97001 * 118.53872 * 161.83952 * 26 25 24 50 50 H 1.08999 * 109.38779 * 293.82160 * 29 23 22 51 51 H 1.09000 * 109.38985 * 53.61326 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 2.0182 -0.0483 2.4055 6 1 1.6584 0.9675 2.4775 7 6 2.4814 -0.7024 3.5389 8 7 2.9204 -1.9401 3.4511 9 14 2.4818 0.1740 5.1886 10 1 1.1900 -0.0699 5.8790 11 1 3.5950 -0.3439 6.0240 12 1 2.6609 1.6324 4.9742 13 6 2.0400 -0.7212 -1.2492 14 1 1.7825 -1.7788 -1.1913 15 6 1.4019 -0.1050 -2.4981 16 6 2.0195 -0.7382 -3.7470 17 6 3.5217 -0.4476 -3.7787 18 6 4.1832 -1.0627 -2.5467 19 7 3.4989 -0.5739 -1.3419 20 6 4.1956 0.0037 -0.3432 21 8 3.6106 0.5018 0.5952 22 6 5.7015 0.0307 -0.3925 23 7 6.2184 0.7110 0.8025 24 6 7.6673 0.9455 0.6907 25 6 8.0947 1.9143 1.7949 26 7 7.5885 1.4566 3.0856 27 6 6.5914 0.5755 3.2026 28 8 6.2117 0.2749 4.3145 29 6 5.9223 -0.0604 2.0170 30 1 -0.3633 -1.0216 -0.1115 31 1 -0.3633 0.4142 0.9404 32 1 -0.3634 0.6074 -0.8290 33 1 2.3418 -1.6027 1.1315 34 1 3.2444 -2.3971 4.2430 35 1 0.3281 -0.2924 -2.4883 36 1 1.5840 0.9696 -2.5072 37 1 1.8585 -1.8161 -3.7250 38 1 1.5497 -0.3191 -4.6368 39 1 3.9567 -0.8789 -4.6802 40 1 3.6838 0.6303 -3.7757 41 1 5.2332 -0.7719 -2.5140 42 1 4.1040 -2.1486 -2.5967 43 1 6.0263 0.5666 -1.2843 44 1 6.0824 -0.9901 -0.4232 45 1 8.2003 0.0017 0.8060 46 1 7.8933 1.3789 -0.2835 47 1 9.1830 1.9645 1.8304 48 1 7.6955 2.9056 1.5807 49 1 7.9933 1.8091 3.8935 50 1 4.8445 -0.0818 2.1782 51 1 6.2905 -1.0793 1.8972 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731297427.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:44 Heat of formation + Delta-G solvation = 5.292896 kcal Electronic energy + Delta-G solvation = -33067.290838 eV Core-core repulsion = 29004.162326 eV Total energy + Delta-G solvation = -4063.128512 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.32029 -39.59912 -37.31916 -36.35127 -35.19912 -34.02402 -32.52175 -32.13648 -29.81822 -29.48852 -28.49642 -27.71288 -25.24408 -24.18574 -23.97485 -22.82204 -22.35822 -20.53997 -19.91832 -18.95676 -18.68712 -17.03145 -16.80031 -16.46378 -16.04333 -15.63957 -15.20228 -14.88787 -14.56812 -14.46285 -14.30765 -14.19870 -13.90017 -13.51624 -13.34556 -13.14987 -12.96599 -12.86664 -12.47731 -12.35676 -12.09474 -12.02651 -11.91559 -11.69639 -11.48086 -11.29514 -11.05042 -10.97419 -10.81821 -10.71576 -10.53066 -10.44388 -10.30301 -9.98650 -9.59236 -9.35130 -9.29294 -8.80732 -8.56262 -8.41352 -7.90999 -7.84962 -6.36109 -5.38319 -2.59306 3.16107 3.34000 3.52871 3.60431 3.74418 3.83189 3.92539 4.04707 4.79609 4.81659 4.84312 4.90230 4.93227 5.00854 5.09228 5.20835 5.25185 5.30207 5.40948 5.47092 5.53389 5.54512 5.61909 5.65980 5.74588 5.82230 5.86414 5.92292 5.96112 5.99250 6.04286 6.12898 6.16606 6.20850 6.41583 6.50186 6.52648 6.56986 6.85876 6.94351 7.04804 7.12943 7.17811 7.25204 7.46340 7.67744 8.09444 8.11587 8.70002 8.78521 9.17031 9.92407 10.44610 10.81218 11.84847 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.009955 B = 0.006130 C = 0.004071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2812.044200 B = 4566.611522 C = 6876.317279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.182 3.818 3 H 0.065 0.935 4 N -0.693 5.693 5 C -0.186 4.186 6 H 0.061 0.939 7 C -0.014 4.014 8 N -0.941 5.941 9 Si 0.893 3.107 10 H -0.303 1.303 11 H -0.288 1.288 12 H -0.289 1.289 13 C 0.150 3.850 14 H 0.062 0.938 15 C -0.128 4.128 16 C -0.118 4.118 17 C -0.134 4.134 18 C 0.113 3.887 19 N -0.618 5.618 20 C 0.470 3.530 21 O -0.409 6.409 22 C 0.042 3.958 23 N -0.512 5.512 24 C 0.032 3.968 25 C 0.122 3.878 26 N -0.731 5.731 27 C 0.526 3.474 28 O -0.536 6.536 29 C 0.031 3.969 30 H 0.040 0.960 31 H 0.056 0.944 32 H 0.034 0.966 33 H 0.375 0.625 34 H 0.248 0.752 35 H 0.073 0.927 36 H 0.064 0.936 37 H 0.061 0.939 38 H 0.059 0.941 39 H 0.067 0.933 40 H 0.064 0.936 41 H 0.075 0.925 42 H 0.059 0.941 43 H 0.093 0.907 44 H 0.053 0.947 45 H 0.041 0.959 46 H 0.091 0.909 47 H 0.074 0.926 48 H 0.069 0.931 49 H 0.394 0.606 50 H 0.172 0.828 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.276 3.974 -18.091 20.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.072 3.928 3 H 0.082 0.918 4 N -0.334 5.334 5 C -0.318 4.318 6 H 0.079 0.921 7 C -0.208 4.208 8 N -0.592 5.592 9 Si 0.727 3.273 10 H -0.232 1.232 11 H -0.214 1.214 12 H -0.216 1.216 13 C 0.046 3.954 14 H 0.079 0.921 15 C -0.167 4.167 16 C -0.156 4.156 17 C -0.172 4.172 18 C -0.011 4.011 19 N -0.358 5.358 20 C 0.253 3.747 21 O -0.274 6.274 22 C -0.089 4.089 23 N -0.238 5.238 24 C -0.096 4.096 25 C -0.003 4.003 26 N -0.385 5.385 27 C 0.313 3.687 28 O -0.411 6.411 29 C -0.098 4.098 30 H 0.059 0.941 31 H 0.075 0.925 32 H 0.053 0.947 33 H 0.208 0.792 34 H 0.058 0.942 35 H 0.091 0.909 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.093 0.907 42 H 0.077 0.923 43 H 0.111 0.889 44 H 0.071 0.929 45 H 0.059 0.941 46 H 0.109 0.891 47 H 0.092 0.908 48 H 0.088 0.912 49 H 0.229 0.771 50 H 0.189 0.811 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 8.413 4.613 -16.903 19.436 hybrid contribution 0.952 -0.585 0.906 1.438 sum 9.364 4.028 -15.997 18.969 Atomic orbital electron populations 1.22578 1.00101 0.99936 1.00346 1.20427 0.90199 0.97118 0.85050 0.91752 1.42306 1.74353 1.13776 1.02947 1.18914 1.32165 0.95963 0.84731 0.92115 1.24410 1.02995 0.96388 0.96992 1.69598 1.50513 1.11095 1.27961 0.86366 0.76188 0.78840 0.85910 1.23187 1.21413 1.21561 1.21488 0.78878 0.99351 0.95689 0.92054 1.21991 1.00020 1.00554 0.94105 1.21502 0.95221 1.00839 0.97995 1.21836 0.96359 1.01417 0.97590 1.21444 0.96210 0.98385 0.85014 1.47821 1.06924 1.62768 1.18263 1.20185 0.88512 0.82902 0.83076 1.91174 1.67696 1.38182 1.30341 1.22026 0.95288 0.97945 0.93647 1.62223 1.11630 1.47958 1.01948 1.22503 0.89083 0.98681 0.99350 1.21349 0.97951 0.98147 0.82892 1.45590 1.37590 1.46348 1.09017 1.20327 0.78492 0.78526 0.91394 1.90807 1.62293 1.61357 1.26621 1.22777 1.07729 0.93849 0.85434 0.94107 0.92506 0.94698 0.79197 0.94192 0.90871 0.91701 0.92055 0.92261 0.91463 0.91703 0.90693 0.92268 0.88925 0.92897 0.94064 0.89114 0.90817 0.91232 0.77132 0.81109 0.92239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.13 8.69 37.16 0.32 -2.81 16 2 C 0.18 3.65 1.78 -67.94 -0.12 3.53 16 3 H 0.06 1.44 6.46 -51.93 -0.34 1.11 16 4 N -0.69 -17.19 3.15 -53.43 -0.17 -17.36 16 5 C -0.19 -5.31 7.69 -15.06 -0.12 -5.43 16 6 H 0.06 1.80 7.83 -52.48 -0.41 1.39 16 7 C -0.01 -0.41 5.06 -17.43 -0.09 -0.50 16 8 N -0.94 -29.22 13.06 55.49 0.72 -28.49 16 9 Si 0.89 25.68 29.55 -169.99 -5.02 20.66 16 10 H -0.30 -8.58 7.11 56.52 0.40 -8.17 16 11 H -0.29 -8.70 7.11 56.52 0.40 -8.30 16 12 H -0.29 -8.35 7.11 56.52 0.40 -7.95 16 13 C 0.15 2.38 2.57 -67.60 -0.17 2.21 16 14 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 15 C -0.13 -1.59 4.65 -26.61 -0.12 -1.72 16 16 C -0.12 -1.16 5.89 -26.69 -0.16 -1.32 16 17 C -0.13 -1.20 6.06 -26.83 -0.16 -1.37 16 18 C 0.11 1.20 6.30 -3.93 -0.02 1.18 16 19 N -0.62 -9.20 2.98 -165.49 -0.49 -9.69 16 20 C 0.47 8.27 7.12 -10.99 -0.08 8.19 16 21 O -0.41 -9.14 6.91 5.55 0.04 -9.10 16 22 C 0.04 0.59 3.86 -4.98 -0.02 0.57 16 23 N -0.51 -8.08 4.47 -237.56 -1.06 -9.14 16 24 C 0.03 0.36 5.60 -3.67 -0.02 0.34 16 25 C 0.12 1.32 7.39 -4.32 -0.03 1.29 16 26 N -0.73 -11.11 5.51 -61.10 -0.34 -11.45 16 27 C 0.53 10.93 7.80 -11.73 -0.09 10.84 16 28 O -0.54 -13.87 17.82 5.56 0.10 -13.77 16 29 C 0.03 0.64 5.15 -5.19 -0.03 0.61 16 30 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.06 1.18 7.99 -51.93 -0.42 0.76 16 32 H 0.03 0.54 6.86 -51.93 -0.36 0.18 16 33 H 0.37 10.06 7.74 -40.82 -0.32 9.75 16 34 H 0.25 7.81 8.31 -40.82 -0.34 7.47 16 35 H 0.07 0.88 6.85 -51.93 -0.36 0.52 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.07 0.66 5.97 -51.93 -0.31 0.35 16 42 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.09 0.99 7.23 -51.93 -0.38 0.61 16 44 H 0.05 0.70 8.04 -51.93 -0.42 0.28 16 45 H 0.04 0.45 8.08 -51.93 -0.42 0.03 16 46 H 0.09 0.74 7.91 -51.93 -0.41 0.33 16 47 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 48 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 49 H 0.39 5.37 8.84 -40.82 -0.36 5.01 16 50 H 0.17 4.44 5.29 -51.93 -0.27 4.17 16 51 H 0.06 1.20 8.05 -51.93 -0.42 0.78 16 LS Contribution 383.24 15.07 5.78 5.78 Total: -1.00 -36.25 383.24 -9.90 -46.15 By element: Atomic # 1 Polarization: 19.35 SS G_CDS: -8.54 Total: 10.81 kcal Atomic # 6 Polarization: 16.52 SS G_CDS: -0.91 Total: 15.61 kcal Atomic # 7 Polarization: -74.80 SS G_CDS: -1.34 Total: -76.13 kcal Atomic # 8 Polarization: -23.01 SS G_CDS: 0.14 Total: -22.87 kcal Atomic # 14 Polarization: 25.68 SS G_CDS: -5.02 Total: 20.66 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -36.25 -9.90 -46.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731297427.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.445 kcal (2) G-P(sol) polarization free energy of solvation -36.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds