Wall clock time and date at job start Tue Mar 31 2020 22:43:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46639 * 2 1 4 4 N 1.46497 * 109.47269 * 119.99678 * 2 1 3 5 5 C 1.36933 * 120.00052 * 281.78946 * 4 2 1 6 6 H 1.08004 * 120.00276 * 359.97438 * 5 4 2 7 7 C 1.38814 * 120.00119 * 180.02562 * 5 4 2 8 8 N 1.31619 * 119.99820 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00214 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47143 * 89.99976 * 9 7 5 11 11 H 1.48504 * 109.47221 * 209.99785 * 9 7 5 12 12 H 1.48491 * 109.47066 * 329.99862 * 9 7 5 13 13 C 1.52992 * 109.47152 * 240.00059 * 2 1 3 14 14 H 1.09000 * 109.58698 * 293.06549 * 13 2 1 15 15 C 1.53193 * 109.70785 * 53.41980 * 13 2 1 16 16 C 1.53038 * 109.31625 * 174.49104 * 15 13 2 17 17 C 1.53038 * 109.53903 * 298.63837 * 16 15 13 18 18 C 1.52760 * 109.38461 * 61.23672 * 17 16 15 19 19 N 1.46925 * 109.00905 * 305.58872 * 18 17 16 20 20 C 1.34770 * 120.62868 * 233.58226 * 19 18 17 21 21 O 1.21287 * 119.99929 * 173.91812 * 20 19 18 22 22 C 1.50694 * 120.00406 * 353.92567 * 20 19 18 23 23 N 1.46897 * 109.47298 * 179.97438 * 22 20 19 24 24 C 1.47195 * 111.00045 * 188.93329 * 23 22 20 25 25 C 1.52983 * 108.72983 * 167.63061 * 24 23 22 26 26 N 1.46003 * 110.03925 * 50.29755 * 25 24 23 27 27 C 1.33578 * 122.88849 * 341.73672 * 26 25 24 28 28 O 1.21281 * 118.52041 * 181.76665 * 27 26 25 29 29 C 1.46895 * 111.00233 * 66.04426 * 23 22 20 30 30 H 1.08997 * 109.47015 * 173.76860 * 1 2 3 31 31 H 1.08997 * 109.47228 * 293.77142 * 1 2 3 32 32 H 1.09002 * 109.47221 * 53.77106 * 1 2 3 33 33 H 0.96997 * 119.99789 * 101.78429 * 4 2 1 34 34 H 0.97001 * 119.99983 * 179.97438 * 8 7 5 35 35 H 1.09005 * 109.49982 * 294.44462 * 15 13 2 36 36 H 1.08997 * 109.49628 * 54.54046 * 15 13 2 37 37 H 1.09002 * 109.45782 * 58.65682 * 16 15 13 38 38 H 1.09003 * 109.46020 * 178.61471 * 16 15 13 39 39 H 1.08998 * 109.49497 * 181.31817 * 17 16 15 40 40 H 1.09004 * 109.49462 * 301.40803 * 17 16 15 41 41 H 1.09001 * 109.50718 * 185.70277 * 18 17 16 42 42 H 1.09000 * 109.43050 * 65.42424 * 18 17 16 43 43 H 1.09000 * 109.47315 * 59.99520 * 22 20 19 44 44 H 1.09002 * 109.46871 * 299.99985 * 22 20 19 45 45 H 1.08997 * 109.59565 * 287.40753 * 24 23 22 46 46 H 1.09001 * 109.59147 * 47.86239 * 24 23 22 47 47 H 1.08998 * 109.37204 * 170.46715 * 25 24 23 48 48 H 1.08994 * 109.38075 * 290.11895 * 25 24 23 49 49 H 0.97001 * 118.53872 * 161.83952 * 26 25 24 50 50 H 1.08999 * 109.38779 * 293.82160 * 29 23 22 51 51 H 1.09000 * 109.38985 * 53.61326 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 2.0182 -0.0483 2.4055 6 1 1.6584 0.9675 2.4775 7 6 2.4814 -0.7024 3.5389 8 7 2.9204 -1.9401 3.4511 9 14 2.4818 0.1740 5.1886 10 1 1.1900 -0.0699 5.8790 11 1 3.5950 -0.3439 6.0240 12 1 2.6609 1.6324 4.9742 13 6 2.0400 -0.7212 -1.2492 14 1 1.7825 -1.7788 -1.1913 15 6 1.4019 -0.1050 -2.4981 16 6 2.0195 -0.7382 -3.7470 17 6 3.5217 -0.4476 -3.7787 18 6 4.1832 -1.0627 -2.5467 19 7 3.4989 -0.5739 -1.3419 20 6 4.1956 0.0037 -0.3432 21 8 3.6106 0.5018 0.5952 22 6 5.7015 0.0307 -0.3925 23 7 6.2184 0.7110 0.8025 24 6 7.6673 0.9455 0.6907 25 6 8.0947 1.9143 1.7949 26 7 7.5885 1.4566 3.0856 27 6 6.5914 0.5755 3.2026 28 8 6.2117 0.2749 4.3145 29 6 5.9223 -0.0604 2.0170 30 1 -0.3633 -1.0216 -0.1115 31 1 -0.3633 0.4142 0.9404 32 1 -0.3634 0.6074 -0.8290 33 1 2.3418 -1.6027 1.1315 34 1 3.2444 -2.3971 4.2430 35 1 0.3281 -0.2924 -2.4883 36 1 1.5840 0.9696 -2.5072 37 1 1.8585 -1.8161 -3.7250 38 1 1.5497 -0.3191 -4.6368 39 1 3.9567 -0.8789 -4.6802 40 1 3.6838 0.6303 -3.7757 41 1 5.2332 -0.7719 -2.5140 42 1 4.1040 -2.1486 -2.5967 43 1 6.0263 0.5666 -1.2843 44 1 6.0824 -0.9901 -0.4232 45 1 8.2003 0.0017 0.8060 46 1 7.8933 1.3789 -0.2835 47 1 9.1830 1.9645 1.8304 48 1 7.6955 2.9056 1.5807 49 1 7.9933 1.8091 3.8935 50 1 4.8445 -0.0818 2.1782 51 1 6.2905 -1.0793 1.8972 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731297427.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:43 Heat of formation + Delta-G solvation = -24.664605 kcal Electronic energy + Delta-G solvation = -33068.589893 eV Core-core repulsion = 29004.162326 eV Total energy + Delta-G solvation = -4064.427567 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.62201 -40.97608 -38.63220 -37.63725 -36.82944 -35.37434 -34.09636 -33.53787 -31.42166 -30.69436 -29.83748 -29.25962 -26.55380 -25.81959 -25.15905 -24.13395 -23.70898 -21.64932 -21.32263 -20.21345 -20.03494 -18.68707 -18.34338 -17.88831 -17.28963 -16.89585 -16.69337 -16.49044 -15.99724 -15.67657 -15.58993 -15.33747 -15.31867 -15.09175 -14.74507 -14.48224 -14.37573 -14.11087 -13.82925 -13.66770 -13.53981 -13.39688 -13.24230 -12.95020 -12.88655 -12.78899 -12.50639 -12.42748 -12.37883 -12.22982 -12.12513 -11.82254 -11.62500 -11.55035 -11.29436 -11.09851 -10.98183 -10.68017 -10.09947 -9.72427 -9.30313 -9.16544 -8.39364 -7.73746 -4.86131 1.34270 1.44539 1.53160 1.57897 2.18153 2.26780 2.35268 2.68919 2.87605 3.64228 3.68802 3.78392 3.89772 3.94346 4.02750 4.11494 4.18222 4.23971 4.34129 4.37537 4.40424 4.46294 4.48703 4.51948 4.63072 4.74135 4.75200 4.81999 4.87389 4.96366 4.98414 5.01852 5.10162 5.14848 5.16044 5.23015 5.27806 5.34772 5.50131 5.55751 5.65832 5.70098 5.74176 5.82885 6.03415 6.11055 6.28179 6.48214 6.91298 7.21183 7.58039 7.89399 8.34653 8.57910 9.49835 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.009955 B = 0.006130 C = 0.004071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2812.044200 B = 4566.611522 C = 6876.317279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.181 3.819 3 H 0.041 0.959 4 N -0.692 5.692 5 C -0.148 4.148 6 H 0.045 0.955 7 C -0.060 4.060 8 N -0.960 5.960 9 Si 0.927 3.073 10 H -0.295 1.295 11 H -0.314 1.314 12 H -0.296 1.296 13 C 0.154 3.846 14 H 0.052 0.948 15 C -0.119 4.119 16 C -0.115 4.115 17 C -0.127 4.127 18 C 0.106 3.894 19 N -0.618 5.618 20 C 0.461 3.539 21 O -0.473 6.473 22 C 0.048 3.952 23 N -0.523 5.523 24 C 0.030 3.970 25 C 0.112 3.888 26 N -0.713 5.713 27 C 0.517 3.483 28 O -0.605 6.605 29 C 0.045 3.955 30 H 0.044 0.956 31 H 0.026 0.974 32 H 0.070 0.930 33 H 0.363 0.637 34 H 0.235 0.765 35 H 0.078 0.922 36 H 0.059 0.941 37 H 0.063 0.937 38 H 0.079 0.921 39 H 0.097 0.903 40 H 0.063 0.937 41 H 0.100 0.900 42 H 0.064 0.936 43 H 0.139 0.861 44 H 0.065 0.935 45 H 0.049 0.951 46 H 0.136 0.864 47 H 0.122 0.878 48 H 0.078 0.922 49 H 0.402 0.598 50 H 0.116 0.884 51 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.173 4.932 -22.950 25.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.073 3.927 3 H 0.059 0.941 4 N -0.330 5.330 5 C -0.281 4.281 6 H 0.063 0.937 7 C -0.251 4.251 8 N -0.615 5.615 9 Si 0.764 3.236 10 H -0.224 1.224 11 H -0.242 1.242 12 H -0.223 1.223 13 C 0.050 3.950 14 H 0.070 0.930 15 C -0.158 4.158 16 C -0.153 4.153 17 C -0.165 4.165 18 C -0.016 4.016 19 N -0.356 5.356 20 C 0.246 3.754 21 O -0.342 6.342 22 C -0.083 4.083 23 N -0.249 5.249 24 C -0.097 4.097 25 C -0.011 4.011 26 N -0.365 5.365 27 C 0.305 3.695 28 O -0.486 6.486 29 C -0.086 4.086 30 H 0.063 0.937 31 H 0.045 0.955 32 H 0.089 0.911 33 H 0.194 0.806 34 H 0.044 0.956 35 H 0.097 0.903 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.098 0.902 39 H 0.116 0.884 40 H 0.082 0.918 41 H 0.118 0.882 42 H 0.082 0.918 43 H 0.157 0.843 44 H 0.083 0.917 45 H 0.067 0.933 46 H 0.154 0.846 47 H 0.140 0.860 48 H 0.096 0.904 49 H 0.238 0.762 50 H 0.134 0.866 51 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 10.331 5.627 -21.892 24.852 hybrid contribution 0.435 -0.757 2.213 2.379 sum 10.765 4.870 -19.679 22.954 Atomic orbital electron populations 1.22432 0.98733 1.00629 1.00194 1.20503 0.90869 0.96019 0.85279 0.94090 1.42302 1.74247 1.13088 1.03362 1.18872 1.28510 0.94712 0.86037 0.93678 1.24632 1.05171 0.97029 0.98272 1.69665 1.52968 1.11784 1.27059 0.85779 0.75359 0.77698 0.84807 1.22386 1.24244 1.22289 1.21302 0.80242 0.98291 0.95187 0.93033 1.21915 1.00276 1.00073 0.93555 1.21504 0.95937 1.00850 0.96964 1.21812 0.95528 1.01420 0.97712 1.21794 0.97380 0.98803 0.83671 1.47963 1.06539 1.61817 1.19257 1.20999 0.90346 0.81503 0.82558 1.91145 1.69170 1.41387 1.32523 1.22096 0.92455 0.99312 0.94402 1.62145 1.15053 1.47060 1.00645 1.22769 0.85833 0.99437 1.01698 1.21836 1.00699 0.98181 0.80354 1.45545 1.35379 1.43973 1.11613 1.20513 0.79306 0.79246 0.90457 1.90762 1.64805 1.64130 1.28867 1.22252 1.04333 0.94136 0.87867 0.93725 0.95497 0.91141 0.80559 0.95607 0.90324 0.92233 0.91781 0.90232 0.88440 0.91782 0.88216 0.91793 0.84309 0.91708 0.93292 0.84569 0.86011 0.90352 0.76213 0.86606 0.93296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.91 8.69 71.98 0.63 -5.28 16 2 C 0.18 7.41 1.78 44.99 0.08 7.49 16 3 H 0.04 1.90 6.46 -2.38 -0.02 1.88 16 4 N -0.69 -35.76 3.15 -322.95 -1.02 -36.78 16 5 C -0.15 -8.89 7.69 84.03 0.65 -8.24 16 6 H 0.05 2.82 7.83 -2.91 -0.02 2.80 16 7 C -0.06 -3.81 5.06 84.86 0.43 -3.38 16 8 N -0.96 -63.10 13.06 21.65 0.28 -62.82 16 9 Si 0.93 55.97 29.55 68.60 2.03 58.00 16 10 H -0.30 -17.09 7.11 99.48 0.71 -16.39 16 11 H -0.31 -20.25 7.11 99.48 0.71 -19.54 16 12 H -0.30 -17.87 7.11 99.48 0.71 -17.16 16 13 C 0.15 4.74 2.57 44.97 0.12 4.86 16 14 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 15 C -0.12 -2.66 4.65 30.67 0.14 -2.52 16 16 C -0.11 -1.79 5.89 30.62 0.18 -1.61 16 17 C -0.13 -1.66 6.06 30.53 0.19 -1.48 16 18 C 0.11 1.82 6.30 86.22 0.54 2.36 16 19 N -0.62 -17.31 2.98 -795.87 -2.37 -19.68 16 20 C 0.46 15.89 7.12 87.66 0.62 16.52 16 21 O -0.47 -21.81 6.91 -3.05 -0.02 -21.83 16 22 C 0.05 1.20 3.86 85.56 0.33 1.53 16 23 N -0.52 -15.66 4.47 -905.49 -4.05 -19.71 16 24 C 0.03 0.54 5.60 86.24 0.48 1.03 16 25 C 0.11 2.01 7.39 86.47 0.64 2.65 16 26 N -0.71 -21.09 5.51 -466.30 -2.57 -23.66 16 27 C 0.52 22.39 7.80 87.70 0.68 23.07 16 28 O -0.60 -33.54 17.82 -3.03 -0.05 -33.60 16 29 C 0.04 1.89 5.15 85.42 0.44 2.33 16 30 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.03 1.12 7.99 -2.39 -0.02 1.10 16 32 H 0.07 2.08 6.86 -2.39 -0.02 2.06 16 33 H 0.36 20.35 7.74 -92.71 -0.72 19.64 16 34 H 0.23 15.72 8.31 -92.71 -0.77 14.95 16 35 H 0.08 1.66 6.85 -2.38 -0.02 1.65 16 36 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.10 1.23 5.97 -2.39 -0.01 1.21 16 42 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.14 2.19 7.23 -2.39 -0.02 2.17 16 44 H 0.07 1.52 8.04 -2.39 -0.02 1.50 16 45 H 0.05 0.87 8.08 -2.39 -0.02 0.85 16 46 H 0.14 1.32 7.91 -2.39 -0.02 1.30 16 47 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 48 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 49 H 0.40 10.70 8.84 -92.71 -0.82 9.88 16 50 H 0.12 6.43 5.29 -2.39 -0.01 6.42 16 51 H 0.05 2.08 8.05 -2.39 -0.02 2.07 16 Total: -1.00 -90.37 383.24 -2.21 -92.59 By element: Atomic # 1 Polarization: 28.74 SS G_CDS: -0.59 Total: 28.15 kcal Atomic # 6 Polarization: 33.18 SS G_CDS: 6.15 Total: 39.33 kcal Atomic # 7 Polarization: -152.92 SS G_CDS: -9.72 Total: -162.64 kcal Atomic # 8 Polarization: -55.35 SS G_CDS: -0.08 Total: -55.42 kcal Atomic # 14 Polarization: 55.97 SS G_CDS: 2.03 Total: 58.00 kcal Total: -90.37 -2.21 -92.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731297427.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.921 kcal (2) G-P(sol) polarization free energy of solvation -90.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds