Wall clock time and date at job start Tue Mar 31 2020 22:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47190 * 2 1 4 4 N 1.46496 * 109.47092 * 120.00837 * 2 1 3 5 5 C 1.36935 * 120.00141 * 274.99374 * 4 2 1 6 6 H 1.08005 * 119.99896 * 0.02562 * 5 4 2 7 7 C 1.38811 * 120.00299 * 179.97438 * 5 4 2 8 8 N 1.31619 * 119.99840 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99837 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47105 * 90.00426 * 9 7 5 11 11 H 1.48507 * 109.46669 * 210.00502 * 9 7 5 12 12 H 1.48498 * 109.47076 * 329.99914 * 9 7 5 13 13 C 1.53005 * 109.46567 * 240.00858 * 2 1 3 14 14 C 1.53039 * 109.46464 * 60.00029 * 13 2 1 15 15 C 1.53185 * 109.31343 * 181.38531 * 14 13 2 16 16 N 1.46924 * 108.77553 * 305.36439 * 15 14 13 17 17 C 1.34783 * 120.63219 * 233.58721 * 16 15 14 18 18 O 1.21283 * 119.99942 * 359.97438 * 17 16 15 19 19 C 1.50701 * 120.00084 * 179.97438 * 17 16 15 20 20 N 1.46504 * 109.46849 * 179.97438 * 19 17 16 21 21 C 1.46382 * 119.32630 * 90.00690 * 20 19 17 22 22 C 1.53234 * 109.15308 * 150.91555 * 21 20 19 23 23 C 1.53241 * 108.56338 * 55.48274 * 22 21 20 24 24 N 1.46386 * 109.15100 * 304.51407 * 23 22 21 25 25 C 1.34131 * 119.33136 * 269.98031 * 20 19 17 26 26 O 1.21588 * 118.70257 * 0.62187 * 25 20 19 27 27 C 1.46928 * 118.74134 * 53.86099 * 16 15 14 28 28 C 1.53046 * 109.45427 * 180.02562 * 13 2 1 29 29 H 1.09001 * 109.47000 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47060 * 299.99211 * 1 2 3 31 31 H 1.08999 * 109.47238 * 59.99493 * 1 2 3 32 32 H 0.97005 * 119.99924 * 95.00093 * 4 2 1 33 33 H 0.96999 * 119.99736 * 180.02562 * 8 7 5 34 34 H 1.09003 * 109.45732 * 300.02124 * 13 2 1 35 35 H 1.09001 * 109.49396 * 61.42963 * 14 13 2 36 36 H 1.09002 * 109.52127 * 301.35158 * 14 13 2 37 37 H 1.09002 * 109.58678 * 185.57956 * 15 14 13 38 38 H 1.08997 * 109.70749 * 65.22074 * 15 14 13 39 39 H 1.09004 * 109.46743 * 60.00656 * 19 17 16 40 40 H 1.08992 * 109.47307 * 299.99917 * 19 17 16 41 41 H 1.09001 * 109.52715 * 31.01228 * 21 20 19 42 42 H 1.08999 * 109.57415 * 270.84933 * 21 20 19 43 43 H 1.08997 * 109.62696 * 295.75503 * 22 21 20 44 44 H 1.09002 * 109.77305 * 175.28743 * 22 21 20 45 45 H 1.09004 * 109.52724 * 184.61977 * 23 22 21 46 46 H 1.09000 * 109.58485 * 64.45116 * 23 22 21 47 47 H 0.96998 * 119.33215 * 208.78279 * 24 23 22 48 48 H 1.08995 * 109.58359 * 65.92896 * 27 16 15 49 49 H 1.09001 * 109.59095 * 186.35336 * 27 16 15 50 50 H 1.08994 * 109.49888 * 298.56109 * 28 13 2 51 51 H 1.08997 * 109.49767 * 58.63386 * 28 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6908 1.1960 5 6 2.1493 -0.0078 2.3757 6 1 1.8921 1.0400 2.4244 7 6 2.6114 -0.6624 3.5091 8 7 2.9243 -1.9395 3.4499 9 14 2.7893 0.2692 5.1185 10 1 1.5213 0.1779 5.8860 11 1 3.8937 -0.3243 5.9144 12 1 3.0945 1.6944 4.8343 13 6 2.0399 -0.7211 -1.2494 14 6 1.5296 0.0007 -2.4987 15 6 2.0133 -0.7439 -3.7470 16 7 3.4750 -0.8768 -3.6817 17 6 4.2490 -0.4581 -4.7027 18 8 3.7399 0.0335 -5.6876 19 6 5.7470 -0.6008 -4.6204 20 7 6.3554 -0.0766 -5.8457 21 6 6.7341 1.3359 -5.9106 22 6 7.9214 1.4947 -6.8661 23 6 7.5390 0.8949 -8.2234 24 7 7.1167 -0.4938 -8.0329 25 6 6.5547 -0.9008 -6.8849 26 8 6.2119 -2.0629 -6.7827 27 6 4.0768 -1.4804 -2.4849 28 6 3.5704 -0.7215 -1.2488 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 2.2491 -1.6320 1.1523 33 1 3.2470 -2.3970 4.2420 34 1 1.6761 -1.7486 -1.2495 35 1 1.9136 1.0207 -2.5118 36 1 0.4399 0.0222 -2.4874 37 1 1.7371 -0.1806 -4.6384 38 1 1.5578 -1.7334 -3.7844 39 1 6.0060 -1.6537 -4.5082 40 1 6.1186 -0.0416 -3.7618 41 1 7.0172 1.6833 -4.9170 42 1 5.8916 1.9234 -6.2756 43 1 8.7875 0.9688 -6.4645 44 1 8.1587 2.5517 -6.9870 45 1 8.4002 0.9253 -8.8909 46 1 6.7204 1.4681 -8.6586 47 1 7.2422 -1.1316 -8.7529 48 1 3.7860 -2.5288 -2.4189 49 1 5.1625 -1.4032 -2.5432 50 1 3.9345 0.3055 -1.2742 51 1 3.9337 -1.2143 -0.3470 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753273815.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:05 Heat of formation + Delta-G solvation = -49.309249 kcal Electronic energy + Delta-G solvation = -30493.845445 eV Core-core repulsion = 26428.349207 eV Total energy + Delta-G solvation = -4065.496238 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.05696 -39.87324 -37.85512 -36.66590 -35.42028 -35.06410 -32.93897 -31.53085 -31.05206 -30.70563 -28.74858 -27.88036 -25.87629 -25.17147 -23.82600 -23.25999 -22.66298 -21.22446 -19.86404 -19.44652 -18.67022 -17.85242 -17.61532 -17.35866 -16.94052 -16.02704 -15.78413 -15.32091 -14.91405 -14.88196 -14.41523 -14.24770 -14.07236 -13.94427 -13.83163 -13.74887 -13.61869 -13.19030 -12.86692 -12.54584 -12.43878 -12.30855 -12.03969 -12.00417 -11.77945 -11.67565 -11.54670 -11.14608 -10.98265 -10.87461 -10.71336 -10.31667 -10.26128 -10.25063 -10.16885 -9.99701 -9.77096 -9.57442 -9.38132 -8.90794 -8.79488 -8.51991 -6.94712 -5.77038 -3.04770 2.31890 2.64964 2.93511 3.17311 3.42230 3.47879 3.49020 3.52042 4.23805 4.34672 4.52361 4.58001 4.61382 4.79259 4.89880 4.97714 5.08677 5.10574 5.12799 5.16089 5.24158 5.25679 5.27684 5.42131 5.53086 5.56583 5.63853 5.71651 5.82365 5.92525 5.96514 5.97717 6.05273 6.13597 6.22020 6.28298 6.32993 6.46116 6.50565 6.59127 6.67480 6.80632 6.80908 6.95565 7.13997 7.44663 7.55736 7.70206 8.19442 8.38672 8.42087 9.53251 10.11749 10.46613 11.45654 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.018051 B = 0.002350 C = 0.002226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.800412 B =11914.533322 C =12576.313969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.178 3.822 3 H 0.044 0.956 4 N -0.723 5.723 5 C -0.234 4.234 6 H 0.068 0.932 7 C -0.014 4.014 8 N -0.934 5.934 9 Si 0.904 3.096 10 H -0.291 1.291 11 H -0.292 1.292 12 H -0.283 1.283 13 C -0.090 4.090 14 C -0.126 4.126 15 C 0.113 3.887 16 N -0.607 5.607 17 C 0.501 3.499 18 O -0.542 6.542 19 C 0.113 3.887 20 N -0.605 5.605 21 C 0.112 3.888 22 C -0.151 4.151 23 C 0.110 3.890 24 N -0.738 5.738 25 C 0.717 3.283 26 O -0.596 6.596 27 C 0.104 3.896 28 C -0.122 4.122 29 H 0.045 0.955 30 H 0.050 0.950 31 H 0.038 0.962 32 H 0.383 0.617 33 H 0.254 0.746 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.077 0.923 37 H 0.086 0.914 38 H 0.065 0.935 39 H 0.116 0.884 40 H 0.109 0.891 41 H 0.084 0.916 42 H 0.070 0.930 43 H 0.078 0.922 44 H 0.098 0.902 45 H 0.082 0.918 46 H 0.065 0.935 47 H 0.414 0.586 48 H 0.072 0.928 49 H 0.079 0.921 50 H 0.062 0.938 51 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.557 6.522 -22.209 25.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.068 3.932 3 H 0.062 0.938 4 N -0.364 5.364 5 C -0.365 4.365 6 H 0.086 0.914 7 C -0.210 4.210 8 N -0.582 5.582 9 Si 0.735 3.265 10 H -0.219 1.219 11 H -0.218 1.218 12 H -0.209 1.209 13 C -0.109 4.109 14 C -0.165 4.165 15 C -0.009 4.009 16 N -0.341 5.341 17 C 0.287 3.713 18 O -0.419 6.419 19 C -0.014 4.014 20 N -0.341 5.341 21 C -0.011 4.011 22 C -0.190 4.190 23 C -0.015 4.015 24 N -0.396 5.396 25 C 0.418 3.582 26 O -0.475 6.475 27 C -0.019 4.019 28 C -0.160 4.160 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.057 0.943 32 H 0.217 0.783 33 H 0.064 0.936 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.095 0.905 37 H 0.104 0.896 38 H 0.083 0.917 39 H 0.134 0.866 40 H 0.127 0.873 41 H 0.102 0.898 42 H 0.088 0.912 43 H 0.097 0.903 44 H 0.116 0.884 45 H 0.101 0.899 46 H 0.083 0.917 47 H 0.251 0.749 48 H 0.091 0.909 49 H 0.098 0.902 50 H 0.081 0.919 51 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 9.124 6.442 -22.392 25.023 hybrid contribution 0.105 0.053 0.819 0.827 sum 9.229 6.495 -21.573 24.346 Atomic orbital electron populations 1.22498 0.99574 1.00765 0.99820 1.20213 0.91571 0.95282 0.86099 0.93775 1.42418 1.78079 1.10635 1.05281 1.19216 1.36103 0.93782 0.87404 0.91384 1.24704 1.02432 0.95957 0.97922 1.69650 1.51200 1.08604 1.28774 0.86240 0.77269 0.78788 0.84200 1.21855 1.21848 1.20872 1.21379 0.94977 0.99971 0.94599 1.22003 1.01104 0.99524 0.93858 1.21601 0.79182 1.00733 0.99373 1.48180 1.07221 1.60853 1.17853 1.21120 0.89858 0.77736 0.82571 1.90652 1.75151 1.44816 1.31284 1.21272 0.90228 1.03180 0.86741 1.46309 1.64098 1.09732 1.13965 1.21621 0.96997 0.81631 1.00873 1.22196 0.98500 1.02949 0.95332 1.21519 1.00075 0.82456 0.97449 1.44878 1.66550 1.12065 1.16079 1.15323 0.78063 0.84429 0.80379 1.90958 1.57560 1.17114 1.81864 1.22019 0.97735 0.97633 0.84479 1.21970 0.96093 1.00805 0.97133 0.93591 0.93064 0.94312 0.78326 0.93589 0.91355 0.91782 0.90477 0.89562 0.91705 0.86607 0.87315 0.89796 0.91187 0.90350 0.88402 0.89937 0.91674 0.74887 0.90946 0.90236 0.91937 0.88894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.92 9.14 37.16 0.34 -2.58 16 2 C 0.18 3.32 2.47 -67.93 -0.17 3.15 16 3 H 0.04 0.86 8.08 -51.93 -0.42 0.44 16 4 N -0.72 -17.02 4.41 -53.42 -0.24 -17.25 16 5 C -0.23 -6.24 9.93 -15.06 -0.15 -6.39 16 6 H 0.07 1.79 7.83 -52.48 -0.41 1.38 16 7 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 8 N -0.93 -27.34 13.06 55.49 0.72 -26.62 16 9 Si 0.90 21.97 29.55 -169.99 -5.02 16.94 16 10 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 11 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 C -0.09 -1.36 1.79 -90.57 -0.16 -1.52 16 14 C -0.13 -1.65 5.04 -26.62 -0.13 -1.78 16 15 C 0.11 1.48 6.43 -3.72 -0.02 1.46 16 16 N -0.61 -7.98 2.97 -172.50 -0.51 -8.49 16 17 C 0.50 7.09 7.76 -10.98 -0.09 7.01 16 18 O -0.54 -9.47 15.84 5.56 0.09 -9.38 16 19 C 0.11 1.27 4.18 -5.19 -0.02 1.25 16 20 N -0.60 -6.78 2.30 -181.16 -0.42 -7.20 16 21 C 0.11 0.85 6.55 -3.98 -0.03 0.83 16 22 C -0.15 -0.75 6.20 -26.49 -0.16 -0.91 16 23 C 0.11 0.60 7.21 -3.98 -0.03 0.57 16 24 N -0.74 -6.72 5.59 -65.52 -0.37 -7.09 16 25 C 0.72 9.40 8.18 -88.06 -0.72 8.68 16 26 O -0.60 -10.25 16.50 5.29 0.09 -10.16 16 27 C 0.10 1.24 6.37 -3.48 -0.02 1.22 16 28 C -0.12 -1.75 5.24 -26.38 -0.14 -1.89 16 29 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.04 0.56 6.40 -51.93 -0.33 0.23 16 32 H 0.38 9.59 7.58 -40.82 -0.31 9.28 16 33 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 34 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.08 0.95 6.36 -51.93 -0.33 0.62 16 37 H 0.09 1.20 7.01 -51.93 -0.36 0.84 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.12 1.35 7.10 -51.93 -0.37 0.98 16 40 H 0.11 0.89 7.42 -51.93 -0.39 0.51 16 41 H 0.08 0.50 7.87 -51.93 -0.41 0.09 16 42 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 44 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 45 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 46 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 47 H 0.41 3.25 8.88 -40.82 -0.36 2.89 16 48 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 49 H 0.08 0.77 5.93 -51.93 -0.31 0.46 16 50 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 51 H 0.09 1.57 7.40 -51.93 -0.38 1.19 16 LS Contribution 397.39 15.07 5.99 5.99 Total: -1.00 -35.64 397.39 -9.86 -45.50 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: -8.59 Total: 9.15 kcal Atomic # 6 Polarization: 10.20 SS G_CDS: -1.60 Total: 8.60 kcal Atomic # 7 Polarization: -65.84 SS G_CDS: -0.81 Total: -66.64 kcal Atomic # 8 Polarization: -19.71 SS G_CDS: 0.18 Total: -19.54 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -35.64 -9.86 -45.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753273815.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.809 kcal (2) G-P(sol) polarization free energy of solvation -35.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds